[MOBY-guts] biomoby commit

[Martin Senger]

senger
Sun Mar  2 22:11:27 EST 2008
Update of /home/repository/moby/moby-live/Java/src/test/junit-resources
In directory dev.open-bio.org:/tmp/cvs-serv2132/src/test/junit-resources

Modified Files:
	parser-test-input-2.xml parser-test-input-3.xml 
	parser-test-input-4.xml 
Added Files:
	parser-test-input-set.xml parser-test-input-xrefs.xml 
Log Message:
More junit tests for XML parser

moby-live/Java/src/test/junit-resources parser-test-input-set.xml,NONE,1.1 parser-test-input-xrefs.xml,NONE,1.1 parser-test-input-2.xml,1.1,1.2 parser-test-input-3.xml,1.1,1.2 parser-test-input-4.xml,1.1,1.2
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/test/junit-resources/parser-test-input-2.xml,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/test/junit-resources/parser-test-input-2.xml	2008/02/28 05:21:48	1.1
+++ /home/repository/moby/moby-live/Java/src/test/junit-resources/parser-test-input-2.xml	2008/03/03 03:11:27	1.2
@@ -6,8 +6,8 @@
     <moby:mobyData moby:queryID="a1">
       <moby:Simple moby:articleName="myDNA">
         <moby:MyDNASequence xmlns:moby="http://www.biomoby.org/moby" moby:id="ir" moby:namespace="">
-          <moby:Integer moby:id="3" moby:namespace="a" moby:articleName="Length">12</moby:Integer>
-          <moby:String moby:id="3" moby:namespace="b" moby:articleName="SequenceString">abcd</moby:String>
+          <moby:Integer moby:id="1" moby:namespace="a" moby:articleName="Length">12</moby:Integer>
+          <moby:String moby:id="2" moby:namespace="b" moby:articleName="SequenceString">abcd</moby:String>
           <moby:Boolean moby:id="3" moby:namespace="c" moby:articleName="Flag">true</moby:Boolean>
         </moby:MyDNASequence>
       </moby:Simple>

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/test/junit-resources/parser-test-input-3.xml,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/test/junit-resources/parser-test-input-3.xml	2008/02/28 05:21:48	1.1
+++ /home/repository/moby/moby-live/Java/src/test/junit-resources/parser-test-input-3.xml	2008/03/03 03:11:27	1.2
@@ -10,9 +10,16 @@
             <Integer id="" namespace="" articleName="start">1</Integer>
             <String id="" namespace="" articleName="phase">b</String>
             <Float id="" namespace="" articleName="score">12.34</Float>
-            <MY_multi_key_value_pair id="" namespace="" articleName="column9_tag_value">
+            <MY_multi_key_value_pair id="1" namespace="" articleName="column9_tag_value">
               <String id="" namespace="" articleName="key">key1</String>
               <String id="" namespace="" articleName="value">value1</String>
+              <String id="" namespace="" articleName="value">value2</String>
+              <String id="" namespace="" articleName="value">value3</String>
+              <String id="" namespace="" articleName="mode">mode1</String>
+            </MY_multi_key_value_pair>
+            <MY_multi_key_value_pair id="2" namespace="" articleName="column9_tag_value">
+              <String id="" namespace="" articleName="key">key2</String>
+              <String id="" namespace="" articleName="value">valueA</String>
               <String id="" namespace="" articleName="mode">mode1</String>
             </MY_multi_key_value_pair>
           </BasicGFF3SequenceFeature>

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/test/junit-resources/parser-test-input-4.xml,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/test/junit-resources/parser-test-input-4.xml	2008/02/28 05:21:48	1.1
+++ /home/repository/moby/moby-live/Java/src/test/junit-resources/parser-test-input-4.xml	2008/03/03 03:11:27	1.2
@@ -1,10 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?>
 
-<!-- ========================================== -->
-<!-- A testing data for MobyParser.             -->
-<!-- Use: build/run/run-moby-parser "this-file" -->
-<!-- ========================================== -->
-
 <moby:MOBY xmlns:moby="http://www.biomoby.org/moby">
   <moby:mobyContent moby:authority="http://&quot;me&quot;.&lt;org&gt;&amp;">
     <moby:serviceNotes><Notes>freetext notes here the notes</Notes></moby:serviceNotes>
@@ -24,8 +19,8 @@
       </moby:Simple>
       <moby:Simple moby:articleName="mySeq">
         <moby:MyDNASequence xmlns:moby="http://www.biomoby.org/moby" moby:id="ir" moby:namespace="">
-          <moby:Integer moby:id="3" moby:namespace="a" moby:articleName="Length">12</moby:Integer>
-          <moby:String moby:id="3" moby:namespace="b" moby:articleName="SequenceString">abcd</moby:String>
+          <moby:Integer moby:id="3" moby:namespace="c" moby:articleName="Length">123</moby:Integer>
+          <moby:String moby:id="4" moby:namespace="d" moby:articleName="SequenceString">xyz</moby:String>
         </moby:MyDNASequence>
       </moby:Simple>
     </moby:mobyData>