[MOBY-guts] biomoby commit

[Paul Gordon]

gordonp
Mon Jan  7 17:01:09 EST 2008
Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared
In directory dev.open-bio.org:/tmp/cvs-serv14590/src/main/org/biomoby/shared

Modified Files:
	MobyService.java 
Log Message:
Made cloneable, and less verbose on metadata fetch failure
moby-live/Java/src/main/org/biomoby/shared MobyService.java,1.22,1.23
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyService.java,v
retrieving revision 1.22
retrieving revision 1.23
diff -u -r1.22 -r1.23
--- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyService.java	2007/12/09 03:43:22	1.22
+++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyService.java	2008/01/07 22:01:09	1.23
@@ -9,7 +9,6 @@
 
 import java.util.*;
 import java.net.URL;
-import java.util.regex.Pattern;
 import org.biomoby.shared.extended.ServiceInstanceParser;
 
 /**
@@ -25,7 +24,7 @@
  */
 
 public class MobyService
-    implements Comparable<MobyService>, LSIDAccessible {
+    implements Comparable<MobyService>, Cloneable, LSIDAccessible {
 
     /**
      * A dummy name used for MobyService instances that do not have
@@ -120,6 +119,38 @@
 	setAuthority (authority);
     }
 
+    /**
+     * Generally, you don't need to clone a service, unless you plan on modifying
+     * fields of the object, but do not want it to affect the service definition 
+     * used by other threads within the JVM (i.e. getService(serviceName) always 
+     * returns the same object within a single JVM instance).
+     */
+    public MobyService clone(){
+	MobyService clone = new MobyService(getName(), getAuthority());
+	clone.setId(getId());
+	clone.setAuthoritative(isAuthoritative());
+	clone.setEmailContact(getEmailContact());
+	clone.setCategory(getCategory());
+	clone.setDescription(getDescription());
+	clone.setType(getType());
+	clone.setURL(getURL());
+	clone.setSignatureURL(getSignatureURL());
+	clone.setPathToRDF(getPathToRDF());
+	clone.setRDF(getRDF());
+	clone.serviceStatus = serviceStatus;
+	clone.statusChecks = statusChecks;
+	for(MobyPrimaryData primary: getPrimaryInputs()){
+	    clone.primaryInputs.add(primary.clone());
+	}
+	for(MobySecondaryData secondary: getSecondaryInputs()){
+	    clone.secondaryInputs.add(secondary.clone());
+	}
+	for(MobyPrimaryData primary: getPrimaryOutputs()){
+	    clone.primaryOutputs.add(primary.clone());
+	}
+	return clone;
+    }
+
     public String getUniqueName() {
 	return name + "/" + authority;
     }
@@ -553,7 +584,7 @@
 		    }
 		}
 	    } catch(Exception e){
-		e.printStackTrace();
+		System.err.println("Error while fetching service metadata: " + e);
 	    }
 	}