[MOBY-guts] biomoby commit

[Eddie Kawas]

kawas
Thu Feb 21 12:15:40 EST 2008
Update of /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl
In directory dev.open-bio.org:/tmp/cvs-serv26411/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl

Modified Files:
	ServiceTypeDataAdapter.pm FetaQueryAdaptor.pm 
	ServiceInstanceDataAdapter.pm ObjectDataAdapter.pm 
	NamespaceDataAdapter.pm 
Log Message:
update of pod - found warnings when i ran podchecker so i am correcting them
moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl ServiceTypeDataAdapter.pm,1.1,1.2 FetaQueryAdaptor.pm,1.1,1.2 ServiceInstanceDataAdapter.pm,1.1,1.2 ObjectDataAdapter.pm,1.1,1.2 NamespaceDataAdapter.pm,1.1,1.2
===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/ServiceTypeDataAdapter.pm,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/ServiceTypeDataAdapter.pm	2008/02/21 00:21:27	1.1
+++ /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/ServiceTypeDataAdapter.pm	2008/02/21 17:15:40	1.2
@@ -38,7 +38,7 @@
  Title     :	new
  Usage     :	
  Function  :	
-                
+
  Returns   :	
  Args      :    
  Notes     :   

===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/FetaQueryAdaptor.pm,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/FetaQueryAdaptor.pm	2008/02/21 00:21:27	1.1
+++ /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/FetaQueryAdaptor.pm	2008/02/21 17:15:40	1.2
@@ -141,7 +141,7 @@
 	my $parser  = XML::LibXML->new();
 	my $fetaDom = $parser->parse_string($inputString);
 	my $nodes = $fetaDom->getElementsByTagName('operationInputs/parameter');
-	
+
 #					<parameter >
 #						<parameterName>articleName1</parameterName>
 #						<isConfigurationParameter>false</isConfigurationParameter>
@@ -149,10 +149,11 @@
 #						<transportDataType>String</transportDataType>
 #						<collectionSemanticType>Simple</collectionSemanticType>
 #					</parameter>
-	
+
 }
 
 =head2 _querySimpleOutputHash
+
  Title     :	_querySimpleOutputHash
  Usage     :	my $un = $API->_querySimpleOutputHash($xml)
  Function  :	Parses the FETA response xml and creates a hashref describing the output simples
@@ -163,6 +164,7 @@
       			article_name		 => String,
       			service_instance_id	 => Integer}, ...]
  Notes     : 	Only allows querying by lsid or type term, so service_instance_id is retrieved from lsid or term
+
 =cut
 
 sub _querySimpleOutputHash {

===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/ServiceInstanceDataAdapter.pm,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/ServiceInstanceDataAdapter.pm	2008/02/21 00:21:27	1.1
+++ /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/ServiceInstanceDataAdapter.pm	2008/02/21 17:15:40	1.2
@@ -38,7 +38,7 @@
  Title     :	new
  Usage     :	
  Function  :	
-                
+
  Returns   :	
  Args      :    
  Notes     :    

===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/ObjectDataAdapter.pm,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/ObjectDataAdapter.pm	2008/02/21 00:21:27	1.1
+++ /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/ObjectDataAdapter.pm	2008/02/21 17:15:40	1.2
@@ -38,7 +38,7 @@
  Title     :	new
  Usage     :	
  Function  :	
-                
+
  Returns   :	
  Args      :    
  Notes     :    

===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/NamespaceDataAdapter.pm,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/NamespaceDataAdapter.pm	2008/02/21 00:21:27	1.1
+++ /home/repository/moby/moby-live/Perl/MOBY-Server/lib/MOBY/Adaptor/moby/Impl/NamespaceDataAdapter.pm	2008/02/21 17:15:40	1.2
@@ -37,7 +37,7 @@
  Title     :	new
  Usage     :	
  Function  :	
-                
+
  Returns   :	
  Args      :    
  Notes     :