[MOBY-guts] biomoby commit
Andreas Groscurth
groscurt at dev.open-bio.org
Wed Dec 17 10:21:57 UTC 2008
groscurt
Wed Dec 17 05:21:57 EST 2008
Update of /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test
In directory dev.open-bio.org:/tmp/cvs-serv5054/src/main/de/mpg/mpiz_koeln/featureClient/test
Modified Files:
SimpleSingleCall.java SingleCallWithParameters.java
MultiCallWithParameters.java MultiCallByDefinition.java
ComplexSingleCall.java SimpleMultiCall.java
SingleMultiServiceCall.java
Log Message:
moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test SimpleSingleCall.java,1.1,1.2 SingleCallWithParameters.java,1.1,1.2 MultiCallWithParameters.java,1.1,1.2 MultiCallByDefinition.java,1.1,1.2 ComplexSingleCall.java,1.1,1.2 SimpleMultiCall.java,1.1,1.2 SingleMultiServiceCall.java,1.1,1.2
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/SimpleSingleCall.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/SimpleSingleCall.java 2008/11/26 08:52:20 1.1
+++ /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/SimpleSingleCall.java 2008/12/17 10:21:56 1.2
@@ -1,7 +1,6 @@
package de.mpg.mpiz_koeln.featureClient.test;
import java.util.Collection;
-import java.util.List;
import org.biomoby.shared.MobyException;
import org.biomoby.shared.datatypes.MobyObject;
@@ -19,7 +18,7 @@
client.setTimeout( 45 );
client.addService( "mpiz-koeln.mpg.de", "ID2IDs" );
client.setServiceInputSingleCall( "", "NP_176539.1" );
- List< FeatureClientResult > result = client.call();
+ Collection< FeatureClientResult > result = client.call();
for ( FeatureClientResult mobyServiceResult : result ) {
Collection< MobyObject > collection = mobyServiceResult.getSingleCallResult();
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/SingleCallWithParameters.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/SingleCallWithParameters.java 2008/11/26 08:52:20 1.1
+++ /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/SingleCallWithParameters.java 2008/12/17 10:21:56 1.2
@@ -1,7 +1,6 @@
package de.mpg.mpiz_koeln.featureClient.test;
import java.util.Collection;
-import java.util.List;
import org.biomoby.shared.MobyException;
import org.biomoby.shared.datatypes.AminoAcidSequence;
@@ -38,7 +37,7 @@
client.setServiceInputSingleCall( organism, sequence, geneName );
- List< FeatureClientResult > result = client.call();
+ Collection < FeatureClientResult > result = client.call();
for ( FeatureClientResult mobyServiceResult : result ) {
Collection< FASTA_AA > fastas = mobyServiceResult.getSingleCallResult();
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/MultiCallWithParameters.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/MultiCallWithParameters.java 2008/11/26 08:52:20 1.1
+++ /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/MultiCallWithParameters.java 2008/12/17 10:21:56 1.2
@@ -1,7 +1,6 @@
package de.mpg.mpiz_koeln.featureClient.test;
import java.util.Collection;
-import java.util.List;
import java.util.Map;
import org.biomoby.shared.MobyException;
@@ -79,7 +78,7 @@
client.addServiceInputMultiCall( "gene2", organism, sequence, geneName );
// the service is called
- List< FeatureClientResult > result = client.call();
+ Collection< FeatureClientResult > result = client.call();
for ( FeatureClientResult mobyServiceResult : result ) {
// the map stores for each identifier given the list of results
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/MultiCallByDefinition.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/MultiCallByDefinition.java 2008/11/26 08:52:20 1.1
+++ /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/MultiCallByDefinition.java 2008/12/17 10:21:56 1.2
@@ -1,7 +1,6 @@
package de.mpg.mpiz_koeln.featureClient.test;
import java.util.Collection;
-import java.util.List;
import java.util.Map;
import org.biomoby.shared.MobyException;
@@ -34,7 +33,7 @@
client.addServiceInputMultiCall( "AGI_LocusCode", "AT1G12000" );
// call the service, which will be found
- List< FeatureClientResult > result = client.call();
+ Collection< FeatureClientResult > result = client.call();
for ( FeatureClientResult mobyServiceResult : result ) {
// as we have called the service multiple times we get back for each identifier the returned results
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/ComplexSingleCall.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/ComplexSingleCall.java 2008/11/26 08:52:20 1.1
+++ /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/ComplexSingleCall.java 2008/12/17 10:21:56 1.2
@@ -34,7 +34,7 @@
client.setServiceInputSingleCall( sequence );
// start the call and retrieve the results
- List< FeatureClientResult > result = client.call();
+ Collection< FeatureClientResult > result = client.call();
for ( FeatureClientResult featureClientResult : result ) {
// as the service was called once we get back the result for this service call
Collection< AminoAcidSequence > sequences = featureClientResult.getSingleCallResult();
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/SimpleMultiCall.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/SimpleMultiCall.java 2008/11/26 08:52:20 1.1
+++ /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/SimpleMultiCall.java 2008/12/17 10:21:56 1.2
@@ -1,7 +1,6 @@
package de.mpg.mpiz_koeln.featureClient.test;
import java.util.Collection;
-import java.util.List;
import java.util.Map;
import org.biomoby.shared.MobyException;
@@ -29,7 +28,7 @@
client.addServiceInputMultiCall( "GO", "0004396" );
// call the service
- List< FeatureClientResult > result = client.call();
+ Collection< FeatureClientResult > result = client.call();
for ( FeatureClientResult mobyServiceResult : result ) {
// the map stores for each id of the input object a list of results
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/SingleMultiServiceCall.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/SingleMultiServiceCall.java 2008/11/26 08:52:20 1.1
+++ /home/repository/moby/moby-live/Java/src/main/de/mpg/mpiz_koeln/featureClient/test/SingleMultiServiceCall.java 2008/12/17 10:21:56 1.2
@@ -1,7 +1,6 @@
package de.mpg.mpiz_koeln.featureClient.test;
import java.util.Collection;
-import java.util.List;
import org.biomoby.shared.MobyException;
import org.biomoby.shared.MobyService;
@@ -27,7 +26,7 @@
client.setServiceInputSingleCall( "AGI_LocusCode", "AT1G12000" );
// call the service
- List< FeatureClientResult > result = client.call();
+ Collection< FeatureClientResult > result = client.call();
for ( FeatureClientResult mobyServiceResult : result ) {
// you can get which service returned the current result
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