[MOBY-guts] biomoby commit

[Paul Gordon]

gordonp
Fri Jun  8 16:30:21 EDT 2007
Update of /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/util
In directory dev.open-bio.org:/tmp/cvs-serv29870/src/main/ca/ucalgary/seahawk/util

Modified Files:
	SeahawkOptions.java 
Log Message:
Code revamp to deal with new disk cache
moby-live/Java/src/main/ca/ucalgary/seahawk/util SeahawkOptions.java,1.1,1.2
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/util/SeahawkOptions.java,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/util/SeahawkOptions.java	2007/06/08 14:04:27	1.1
+++ /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/util/SeahawkOptions.java	2007/06/08 20:30:21	1.2
@@ -265,7 +265,7 @@
      * @return the file system location where preferences are stored (whether the file currently exists or not)
      */
     public static File getDefaultsFile(){
-	return new File(System.getProperty("java.io.tmpdir"), System.getProperty("user.name")+"."+PROPS_FILE_NAME);
+	return new File(System.getProperty("user.dir"), PROPS_FILE_NAME);
     }
 
     /**
@@ -320,12 +320,12 @@
 	    throw new IOException("The temporary data path given (" + dir.toString() + 
 				  ") is not writeable as required");
 	}
-	// Uncomment if we ever need to do a directory listing
-	//if(!dir.canRead()){
-	//    throw new IOException("The temporary data path given (" + dir.toString() + 
-	//			  ") is not readable as required");
-	//}
+	if(!dir.canRead()){
+	    throw new IOException("The temporary data path given (" + dir.toString() + 
+				  ") is not readable as required");
+	}
 	tmpDir = dir;		
+	RegistryCache.setTempDir(dir);
     }
 
     /**