[MOBY-guts] biomoby commit

[Paul Gordon]

gordonp
Fri Dec 14 16:27:01 EST 2007
Update of /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services
In directory dev.open-bio.org:/tmp/cvs-serv24454/src/main/ca/ucalgary/services

Modified Files:
	ACDService.java 
Log Message:
Added definition of EMBOSS_DATA env var for program execution
moby-live/Java/src/main/ca/ucalgary/services ACDService.java,1.5,1.6
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/ACDService.java,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/ACDService.java	2007/12/06 23:36:21	1.5
+++ /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/services/ACDService.java	2007/12/14 21:27:01	1.6
@@ -313,9 +313,11 @@
 	// programs like emma call other programs such as clustalw
 	String libDir = embossRootDirName+File.separator+"lib";
 	String binDir = programBinaryFile.getParent();
+	String dataDir = embossRootDirName+File.separator+"share"+File.separator+"EMBOSS"+File.separator+"data";
 	final Process process = runtime.exec(command, 
 					     new String[]{"EMBOSS="+embossRootDirName,
 							  "EMBOSS_ACDROOT="+acdRootDirName,
+							  "EMBOSS_DATA="+dataDir,
 					                  "LD_LIBRARY_PATH="+libDir,
 					                  "PATH="+libDir+File.pathSeparator+binDir},
 					     workingDir);