From kawas at dev.open-bio.org Tue Sep 5 15:04:08 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 5 Sep 2006 15:04:08 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609051904.k85J48Be010168@dev.open-bio.org> kawas Tue Sep 5 15:04:08 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/rdfagent/util In directory dev.open-bio.org:/tmp/cvs-serv10116/Java/src/main/org/biomoby/registry/rdfagent/util Modified Files: Log.java SignatureURLConnection.java Report.java Constants.java Added Files: ServiceProvider.java Log Message: agent updates. moby-live/Java/src/main/org/biomoby/registry/rdfagent/util ServiceProvider.java,NONE,1.1 Log.java,1.9,1.10 SignatureURLConnection.java,1.11,1.12 Report.java,1.12,1.13 Constants.java,1.13,1.14 From kawas at dev.open-bio.org Tue Sep 5 15:04:08 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 5 Sep 2006 15:04:08 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609051904.k85J48n5010183@dev.open-bio.org> kawas Tue Sep 5 15:04:08 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/config In directory dev.open-bio.org:/tmp/cvs-serv10116/config Modified Files: RDFagent_config.txt Log Message: agent updates. moby-live/Java/src/config RDFagent_config.txt,1.5,1.6 From kawas at dev.open-bio.org Tue Sep 5 15:04:08 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 5 Sep 2006 15:04:08 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609051904.k85J48Cl010150@dev.open-bio.org> kawas Tue Sep 5 15:04:08 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/rdfagent/verifier In directory dev.open-bio.org:/tmp/cvs-serv10116/Java/src/main/org/biomoby/registry/rdfagent/verifier Modified Files: Processor.java MobyServiceComparator.java Main.java Log Message: agent updates. moby-live/Java/src/main/org/biomoby/registry/rdfagent/verifier Processor.java,1.26,1.27 MobyServiceComparator.java,1.5,1.6 Main.java,1.17,1.18 From kawas at dev.open-bio.org Tue Sep 5 15:24:06 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 5 Sep 2006 15:24:06 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609051924.k85JO6c8010302@dev.open-bio.org> kawas Tue Sep 5 15:24:06 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/rdfagent/util In directory dev.open-bio.org:/tmp/cvs-serv10254/Java/src/main/org/biomoby/registry/rdfagent/util Modified Files: SignatureURLConnection.java Constants.java Log Message: moby-live/Java/src/main/org/biomoby/registry/rdfagent/util SignatureURLConnection.java,1.12,1.13 Constants.java,1.14,1.15 From kawas at dev.open-bio.org Tue Sep 5 15:24:06 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 5 Sep 2006 15:24:06 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609051924.k85JO6GY010286@dev.open-bio.org> kawas Tue Sep 5 15:24:06 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/config In directory dev.open-bio.org:/tmp/cvs-serv10254/config Modified Files: RDFagent_config.txt Log Message: moby-live/Java/src/config RDFagent_config.txt,1.6,1.7 From kawas at dev.open-bio.org Tue Sep 5 15:29:28 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 5 Sep 2006 15:29:28 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609051929.k85JTSaK010346@dev.open-bio.org> kawas Tue Sep 5 15:29:27 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/support/rdfagent In directory dev.open-bio.org:/tmp/cvs-serv10314/Java/src/support/rdfagent Modified Files: README.txt Log Message: moby-live/Java/src/support/rdfagent README.txt,1.6,1.7 From d.haase at dev.open-bio.org Thu Sep 7 05:22:08 2006 From: d.haase at dev.open-bio.org (Dirk Haase) Date: Thu, 7 Sep 2006 05:22:08 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609070922.k879M8Bh016178@dev.open-bio.org> d.haase Thu Sep 7 05:22:08 EDT 2006 Update of /home/repository/moby/moby-live/Java/docs In directory dev.open-bio.org:/tmp/cvs-serv16130 Modified Files: index.html Log Message: added links to documentation by the AraWS project moby-live/Java/docs index.html,1.27,1.28 From kawas at dev.open-bio.org Thu Sep 7 15:35:21 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Thu, 7 Sep 2006 15:35:21 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609071935.k87JZLRo017428@dev.open-bio.org> kawas Thu Sep 7 15:35:21 EDT 2006 Update of /home/repository/moby/moby-live/Perl/MOBY In directory dev.open-bio.org:/tmp/cvs-serv17396 Modified Files: Central.pm Log Message: added a check for articlenames that contain 'special' characters like: :;'{[}]<,>."?/|\!@#$%^&*()+= when registering datatypes. moby-live/Perl/MOBY Central.pm,1.253,1.254 From kawas at dev.open-bio.org Thu Sep 7 16:33:10 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Thu, 7 Sep 2006 16:33:10 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609072033.k87KXAR2017636@dev.open-bio.org> kawas Thu Sep 7 16:33:10 EDT 2006 Update of /home/repository/moby/moby-live/Perl/MOBY In directory dev.open-bio.org:/tmp/cvs-serv17604 Modified Files: Central.pm Log Message: added a check for articlenames that contain 'special' characters like: :;'{[}]<,>."?/|\!@#$%^&*()+= when registering service instances moby-live/Perl/MOBY Central.pm,1.254,1.255 From kawas at dev.open-bio.org Thu Sep 7 16:52:15 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Thu, 7 Sep 2006 16:52:15 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609072052.k87KqFUw018024@dev.open-bio.org> kawas Thu Sep 7 16:52:15 EDT 2006 Update of /home/repository/moby/moby-live/Docs/MOBY-S_API In directory dev.open-bio.org:/tmp/cvs-serv17990/MOBY-S_API Modified Files: SecondaryArticle.html XMLPayloads.html PrimaryArticle.html Log Message: updated doc to say that articlenames that contain 'special' characters like: :;'{[}]<,>."?/|\!@#$%^&*()+= when registering service instances or datatypes. moby-live/Docs/MOBY-S_API SecondaryArticle.html,1.6,1.7 XMLPayloads.html,1.14,1.15 PrimaryArticle.html,1.3,1.4 From kawas at dev.open-bio.org Fri Sep 15 14:28:24 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Fri, 15 Sep 2006 14:28:24 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609151828.k8FISO9A032297@dev.open-bio.org> kawas Fri Sep 15 14:28:23 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority In directory dev.open-bio.org:/tmp/cvs-serv32264/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority Modified Files: MobyAuthority.java Log Message: moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority MobyAuthority.java,1.6,1.7 From kawas at dev.open-bio.org Fri Sep 15 17:50:22 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Fri, 15 Sep 2006 17:50:22 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609152150.k8FLoMgu000335@dev.open-bio.org> kawas Fri Sep 15 17:50:21 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources In directory dev.open-bio.org:/tmp/cvs-serv303/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources Modified Files: RESOURCE.java Log Message: moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources RESOURCE.java,1.21,1.22 From kawas at dev.open-bio.org Tue Sep 19 11:33:42 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 19 Sep 2006 11:33:42 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609191533.k8JFXgi8002448@dev.open-bio.org> kawas Tue Sep 19 11:33:42 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/rdfagent/util In directory dev.open-bio.org:/tmp/cvs-serv2416/Java/src/main/org/biomoby/registry/rdfagent/util Modified Files: Mailer.java Log Message: moby-live/Java/src/main/org/biomoby/registry/rdfagent/util Mailer.java,1.2,1.3 From kawas at dev.open-bio.org Wed Sep 20 12:11:11 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Wed, 20 Sep 2006 12:11:11 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609201611.k8KGBBFR011241@dev.open-bio.org> kawas Wed Sep 20 12:11:11 EDT 2006 Update of /home/repository/moby/moby-live/Perl/t In directory dev.open-bio.org:/tmp/cvs-serv11209 Modified Files: Client-Central.t Log Message: Added tests for invalid characters in articlename for registerService. I dont test for &<>[]' because the registrys XML parser wont accept them anyway. moby-live/Perl/t Client-Central.t,1.53,1.54 From gordonp at dev.open-bio.org Fri Sep 22 18:25:55 2006 From: gordonp at dev.open-bio.org (Paul Gordon) Date: Fri, 22 Sep 2006 18:25:55 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609222225.k8MMPtlN018597@dev.open-bio.org> gordonp Fri Sep 22 18:25:55 EDT 2006 Update of /home/repository/moby/moby-live/Docs/MOBY-S_API In directory dev.open-bio.org:/tmp/cvs-serv18565 Modified Files: InputMessage.html Log Message: Added blank mobyContent "ping" functionality requirement to the docs. moby-live/Docs/MOBY-S_API InputMessage.html,1.5,1.6 From gordonp at dev.open-bio.org Fri Sep 22 18:55:38 2006 From: gordonp at dev.open-bio.org (Paul Gordon) Date: Fri, 22 Sep 2006 18:55:38 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609222255.k8MMtckK018724@dev.open-bio.org> gordonp Fri Sep 22 18:55:38 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared In directory dev.open-bio.org:/tmp/cvs-serv18692/src/main/org/biomoby/shared Modified Files: MobyNamespace.java Log Message: Avoid null pointer exception in comparison moby-live/Java/src/main/org/biomoby/shared MobyNamespace.java,1.5,1.6 From gordonp at dev.open-bio.org Fri Sep 22 18:56:44 2006 From: gordonp at dev.open-bio.org (Paul Gordon) Date: Fri, 22 Sep 2006 18:56:44 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609222256.k8MMuiJN018785@dev.open-bio.org> gordonp Fri Sep 22 18:56:44 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared In directory dev.open-bio.org:/tmp/cvs-serv18753/src/main/org/biomoby/shared Modified Files: MobyServiceType.java Log Message: c-tor parameter clarified moby-live/Java/src/main/org/biomoby/shared MobyServiceType.java,1.6,1.7 From gordonp at dev.open-bio.org Fri Sep 22 18:59:09 2006 From: gordonp at dev.open-bio.org (Paul Gordon) Date: Fri, 22 Sep 2006 18:59:09 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609222259.k8MMx9Hp018867@dev.open-bio.org> gordonp Fri Sep 22 18:59:09 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client In directory dev.open-bio.org:/tmp/cvs-serv18835/src/main/org/biomoby/client Modified Files: MobyRequest.java Log Message: 1) avoid double perserving space in xml strings, 2) reuse Service object. moby-live/Java/src/main/org/biomoby/client MobyRequest.java,1.18,1.19 From gordonp at dev.open-bio.org Fri Sep 22 19:01:04 2006 From: gordonp at dev.open-bio.org (Paul Gordon) Date: Fri, 22 Sep 2006 19:01:04 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609222301.k8MN14YK018930@dev.open-bio.org> gordonp Fri Sep 22 19:01:04 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data In directory dev.open-bio.org:/tmp/cvs-serv18898/src/main/org/biomoby/shared/data Modified Files: MobyContentInstance.java Log Message: Add notes only if non-blank. adopt groupID from incoming XML even if not in MOBY namespace moby-live/Java/src/main/org/biomoby/shared/data MobyContentInstance.java,1.3,1.4 From senger at dev.open-bio.org Wed Sep 27 05:12:31 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Wed, 27 Sep 2006 05:12:31 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609270912.k8R9CVbZ001065@dev.open-bio.org> senger Wed Sep 27 05:12:31 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/generator In directory dev.open-bio.org:/tmp/cvs-serv1013/src/main/org/biomoby/service/generator Modified Files: DataTypesGenerator.java Log Message: moses fixed to avoid java keywords in article names moby-live/Java/src/main/org/biomoby/service/generator DataTypesGenerator.java,1.3,1.4 From senger at dev.open-bio.org Wed Sep 27 05:12:31 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Wed, 27 Sep 2006 05:12:31 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609270912.k8R9CVf1001046@dev.open-bio.org> senger Wed Sep 27 05:12:31 EDT 2006 Update of /home/repository/moby/moby-live/Java/docs In directory dev.open-bio.org:/tmp/cvs-serv1013/docs Modified Files: ChangeLog Log Message: moses fixed to avoid java keywords in article names moby-live/Java/docs ChangeLog,1.69,1.70 From senger at dev.open-bio.org Wed Sep 27 05:12:31 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Wed, 27 Sep 2006 05:12:31 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609270912.k8R9CVrs001084@dev.open-bio.org> senger Wed Sep 27 05:12:31 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared In directory dev.open-bio.org:/tmp/cvs-serv1013/src/main/org/biomoby/shared Modified Files: Utils.java Log Message: moses fixed to avoid java keywords in article names moby-live/Java/src/main/org/biomoby/shared Utils.java,1.14,1.15 From senger at dev.open-bio.org Wed Sep 27 05:12:31 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Wed, 27 Sep 2006 05:12:31 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609270912.k8R9CVtW001029@dev.open-bio.org> senger Wed Sep 27 05:12:31 EDT 2006 Update of /home/repository/moby/moby-live/Java In directory dev.open-bio.org:/tmp/cvs-serv1013 Modified Files: build.xml Log Message: moses fixed to avoid java keywords in article names moby-live/Java build.xml,1.57,1.58 From senger at dev.open-bio.org Wed Sep 27 07:15:59 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Wed, 27 Sep 2006 07:15:59 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609271115.k8RBFx4x001667@dev.open-bio.org> senger Wed Sep 27 07:15:59 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared In directory dev.open-bio.org:/tmp/cvs-serv1636/src/main/org/biomoby/shared Modified Files: Utils.java Log Message: moses - better escaping article names moby-live/Java/src/main/org/biomoby/shared Utils.java,1.15,1.16 From senger at dev.open-bio.org Wed Sep 27 07:15:59 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Wed, 27 Sep 2006 07:15:59 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609271115.k8RBFxCb001652@dev.open-bio.org> senger Wed Sep 27 07:15:58 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/dashboard In directory dev.open-bio.org:/tmp/cvs-serv1636/src/main/org/biomoby/service/dashboard Modified Files: RegistrationServiceSubPanel.java Log Message: moses - better escaping article names moby-live/Java/src/main/org/biomoby/service/dashboard RegistrationServiceSubPanel.java,1.10,1.11 From kawas at dev.open-bio.org Wed Sep 27 10:25:31 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Wed, 27 Sep 2006 10:25:31 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609271425.k8REPVjJ002024@dev.open-bio.org> kawas Wed Sep 27 10:25:30 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources In directory dev.open-bio.org:/tmp/cvs-serv1992/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources Modified Files: ServiceInstanceCache.java Log Message: moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources ServiceInstanceCache.java,1.2,1.3 From senger at dev.open-bio.org Thu Sep 28 07:54:32 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Thu, 28 Sep 2006 07:54:32 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609281154.k8SBsWNg008570@dev.open-bio.org> senger Thu Sep 28 07:54:32 EDT 2006 Update of /home/repository/moby/moby-live/Java/docs In directory dev.open-bio.org:/tmp/cvs-serv8554/docs Modified Files: ChangeLog Log Message: better XML escaping moby-live/Java/docs ChangeLog,1.70,1.71 From senger at dev.open-bio.org Thu Sep 28 07:54:32 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Thu, 28 Sep 2006 07:54:32 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609281154.k8SBsWQ6008585@dev.open-bio.org> senger Thu Sep 28 07:54:32 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client In directory dev.open-bio.org:/tmp/cvs-serv8554/src/main/org/biomoby/client Modified Files: CentralImpl.java Log Message: better XML escaping moby-live/Java/src/main/org/biomoby/client CentralImpl.java,1.45,1.46 From senger at dev.open-bio.org Thu Sep 28 09:32:07 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Thu, 28 Sep 2006 09:32:07 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609281332.k8SDW7WZ008694@dev.open-bio.org> senger Thu Sep 28 09:32:06 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/dashboard/help In directory dev.open-bio.org:/tmp/cvs-serv8678/src/main/org/biomoby/service/dashboard/help Modified Files: RegistrationPanel.html Log Message: help improved moby-live/Java/src/main/org/biomoby/service/dashboard/help RegistrationPanel.html,1.2,1.3 From kawas at dev.open-bio.org Thu Sep 28 15:54:43 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Thu, 28 Sep 2006 15:54:43 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609281954.k8SJshLW011191@dev.open-bio.org> kawas Thu Sep 28 15:54:43 EDT 2006 Update of /home/repository/moby/moby-live/Perl/MOBY In directory dev.open-bio.org:/tmp/cvs-serv11159 Modified Files: Central.pm Log Message: updated the findService so that it outputs XML that was created by LibXML. This should fix the escaping of & and other illegal xml characters. moby-live/Perl/MOBY Central.pm,1.255,1.256 From kawas at dev.open-bio.org Tue Sep 5 19:04:08 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 5 Sep 2006 15:04:08 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609051904.k85J48Be010168@dev.open-bio.org> kawas Tue Sep 5 15:04:08 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/rdfagent/util In directory dev.open-bio.org:/tmp/cvs-serv10116/Java/src/main/org/biomoby/registry/rdfagent/util Modified Files: Log.java SignatureURLConnection.java Report.java Constants.java Added Files: ServiceProvider.java Log Message: agent updates. moby-live/Java/src/main/org/biomoby/registry/rdfagent/util ServiceProvider.java,NONE,1.1 Log.java,1.9,1.10 SignatureURLConnection.java,1.11,1.12 Report.java,1.12,1.13 Constants.java,1.13,1.14 From kawas at dev.open-bio.org Tue Sep 5 19:04:08 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 5 Sep 2006 15:04:08 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609051904.k85J48n5010183@dev.open-bio.org> kawas Tue Sep 5 15:04:08 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/config In directory dev.open-bio.org:/tmp/cvs-serv10116/config Modified Files: RDFagent_config.txt Log Message: agent updates. moby-live/Java/src/config RDFagent_config.txt,1.5,1.6 From kawas at dev.open-bio.org Tue Sep 5 19:04:08 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 5 Sep 2006 15:04:08 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609051904.k85J48Cl010150@dev.open-bio.org> kawas Tue Sep 5 15:04:08 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/rdfagent/verifier In directory dev.open-bio.org:/tmp/cvs-serv10116/Java/src/main/org/biomoby/registry/rdfagent/verifier Modified Files: Processor.java MobyServiceComparator.java Main.java Log Message: agent updates. moby-live/Java/src/main/org/biomoby/registry/rdfagent/verifier Processor.java,1.26,1.27 MobyServiceComparator.java,1.5,1.6 Main.java,1.17,1.18 From kawas at dev.open-bio.org Tue Sep 5 19:24:06 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 5 Sep 2006 15:24:06 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609051924.k85JO6c8010302@dev.open-bio.org> kawas Tue Sep 5 15:24:06 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/rdfagent/util In directory dev.open-bio.org:/tmp/cvs-serv10254/Java/src/main/org/biomoby/registry/rdfagent/util Modified Files: SignatureURLConnection.java Constants.java Log Message: moby-live/Java/src/main/org/biomoby/registry/rdfagent/util SignatureURLConnection.java,1.12,1.13 Constants.java,1.14,1.15 From kawas at dev.open-bio.org Tue Sep 5 19:24:06 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 5 Sep 2006 15:24:06 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609051924.k85JO6GY010286@dev.open-bio.org> kawas Tue Sep 5 15:24:06 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/config In directory dev.open-bio.org:/tmp/cvs-serv10254/config Modified Files: RDFagent_config.txt Log Message: moby-live/Java/src/config RDFagent_config.txt,1.6,1.7 From kawas at dev.open-bio.org Tue Sep 5 19:29:28 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 5 Sep 2006 15:29:28 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609051929.k85JTSaK010346@dev.open-bio.org> kawas Tue Sep 5 15:29:27 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/support/rdfagent In directory dev.open-bio.org:/tmp/cvs-serv10314/Java/src/support/rdfagent Modified Files: README.txt Log Message: moby-live/Java/src/support/rdfagent README.txt,1.6,1.7 From d.haase at dev.open-bio.org Thu Sep 7 09:22:08 2006 From: d.haase at dev.open-bio.org (Dirk Haase) Date: Thu, 7 Sep 2006 05:22:08 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609070922.k879M8Bh016178@dev.open-bio.org> d.haase Thu Sep 7 05:22:08 EDT 2006 Update of /home/repository/moby/moby-live/Java/docs In directory dev.open-bio.org:/tmp/cvs-serv16130 Modified Files: index.html Log Message: added links to documentation by the AraWS project moby-live/Java/docs index.html,1.27,1.28 From kawas at dev.open-bio.org Thu Sep 7 19:35:21 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Thu, 7 Sep 2006 15:35:21 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609071935.k87JZLRo017428@dev.open-bio.org> kawas Thu Sep 7 15:35:21 EDT 2006 Update of /home/repository/moby/moby-live/Perl/MOBY In directory dev.open-bio.org:/tmp/cvs-serv17396 Modified Files: Central.pm Log Message: added a check for articlenames that contain 'special' characters like: :;'{[}]<,>."?/|\!@#$%^&*()+= when registering datatypes. moby-live/Perl/MOBY Central.pm,1.253,1.254 From kawas at dev.open-bio.org Thu Sep 7 20:33:10 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Thu, 7 Sep 2006 16:33:10 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609072033.k87KXAR2017636@dev.open-bio.org> kawas Thu Sep 7 16:33:10 EDT 2006 Update of /home/repository/moby/moby-live/Perl/MOBY In directory dev.open-bio.org:/tmp/cvs-serv17604 Modified Files: Central.pm Log Message: added a check for articlenames that contain 'special' characters like: :;'{[}]<,>."?/|\!@#$%^&*()+= when registering service instances moby-live/Perl/MOBY Central.pm,1.254,1.255 From kawas at dev.open-bio.org Thu Sep 7 20:52:15 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Thu, 7 Sep 2006 16:52:15 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609072052.k87KqFUw018024@dev.open-bio.org> kawas Thu Sep 7 16:52:15 EDT 2006 Update of /home/repository/moby/moby-live/Docs/MOBY-S_API In directory dev.open-bio.org:/tmp/cvs-serv17990/MOBY-S_API Modified Files: SecondaryArticle.html XMLPayloads.html PrimaryArticle.html Log Message: updated doc to say that articlenames that contain 'special' characters like: :;'{[}]<,>."?/|\!@#$%^&*()+= when registering service instances or datatypes. moby-live/Docs/MOBY-S_API SecondaryArticle.html,1.6,1.7 XMLPayloads.html,1.14,1.15 PrimaryArticle.html,1.3,1.4 From kawas at dev.open-bio.org Fri Sep 15 18:28:24 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Fri, 15 Sep 2006 14:28:24 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609151828.k8FISO9A032297@dev.open-bio.org> kawas Fri Sep 15 14:28:23 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority In directory dev.open-bio.org:/tmp/cvs-serv32264/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority Modified Files: MobyAuthority.java Log Message: moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority MobyAuthority.java,1.6,1.7 From kawas at dev.open-bio.org Fri Sep 15 21:50:22 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Fri, 15 Sep 2006 17:50:22 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609152150.k8FLoMgu000335@dev.open-bio.org> kawas Fri Sep 15 17:50:21 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources In directory dev.open-bio.org:/tmp/cvs-serv303/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources Modified Files: RESOURCE.java Log Message: moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources RESOURCE.java,1.21,1.22 From kawas at dev.open-bio.org Tue Sep 19 15:33:42 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Tue, 19 Sep 2006 11:33:42 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609191533.k8JFXgi8002448@dev.open-bio.org> kawas Tue Sep 19 11:33:42 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/rdfagent/util In directory dev.open-bio.org:/tmp/cvs-serv2416/Java/src/main/org/biomoby/registry/rdfagent/util Modified Files: Mailer.java Log Message: moby-live/Java/src/main/org/biomoby/registry/rdfagent/util Mailer.java,1.2,1.3 From kawas at dev.open-bio.org Wed Sep 20 16:11:11 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Wed, 20 Sep 2006 12:11:11 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609201611.k8KGBBFR011241@dev.open-bio.org> kawas Wed Sep 20 12:11:11 EDT 2006 Update of /home/repository/moby/moby-live/Perl/t In directory dev.open-bio.org:/tmp/cvs-serv11209 Modified Files: Client-Central.t Log Message: Added tests for invalid characters in articlename for registerService. I dont test for &<>[]' because the registrys XML parser wont accept them anyway. moby-live/Perl/t Client-Central.t,1.53,1.54 From gordonp at dev.open-bio.org Fri Sep 22 22:25:55 2006 From: gordonp at dev.open-bio.org (Paul Gordon) Date: Fri, 22 Sep 2006 18:25:55 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609222225.k8MMPtlN018597@dev.open-bio.org> gordonp Fri Sep 22 18:25:55 EDT 2006 Update of /home/repository/moby/moby-live/Docs/MOBY-S_API In directory dev.open-bio.org:/tmp/cvs-serv18565 Modified Files: InputMessage.html Log Message: Added blank mobyContent "ping" functionality requirement to the docs. moby-live/Docs/MOBY-S_API InputMessage.html,1.5,1.6 From gordonp at dev.open-bio.org Fri Sep 22 22:55:38 2006 From: gordonp at dev.open-bio.org (Paul Gordon) Date: Fri, 22 Sep 2006 18:55:38 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609222255.k8MMtckK018724@dev.open-bio.org> gordonp Fri Sep 22 18:55:38 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared In directory dev.open-bio.org:/tmp/cvs-serv18692/src/main/org/biomoby/shared Modified Files: MobyNamespace.java Log Message: Avoid null pointer exception in comparison moby-live/Java/src/main/org/biomoby/shared MobyNamespace.java,1.5,1.6 From gordonp at dev.open-bio.org Fri Sep 22 22:56:44 2006 From: gordonp at dev.open-bio.org (Paul Gordon) Date: Fri, 22 Sep 2006 18:56:44 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609222256.k8MMuiJN018785@dev.open-bio.org> gordonp Fri Sep 22 18:56:44 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared In directory dev.open-bio.org:/tmp/cvs-serv18753/src/main/org/biomoby/shared Modified Files: MobyServiceType.java Log Message: c-tor parameter clarified moby-live/Java/src/main/org/biomoby/shared MobyServiceType.java,1.6,1.7 From gordonp at dev.open-bio.org Fri Sep 22 22:59:09 2006 From: gordonp at dev.open-bio.org (Paul Gordon) Date: Fri, 22 Sep 2006 18:59:09 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609222259.k8MMx9Hp018867@dev.open-bio.org> gordonp Fri Sep 22 18:59:09 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client In directory dev.open-bio.org:/tmp/cvs-serv18835/src/main/org/biomoby/client Modified Files: MobyRequest.java Log Message: 1) avoid double perserving space in xml strings, 2) reuse Service object. moby-live/Java/src/main/org/biomoby/client MobyRequest.java,1.18,1.19 From gordonp at dev.open-bio.org Fri Sep 22 23:01:04 2006 From: gordonp at dev.open-bio.org (Paul Gordon) Date: Fri, 22 Sep 2006 19:01:04 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609222301.k8MN14YK018930@dev.open-bio.org> gordonp Fri Sep 22 19:01:04 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/data In directory dev.open-bio.org:/tmp/cvs-serv18898/src/main/org/biomoby/shared/data Modified Files: MobyContentInstance.java Log Message: Add notes only if non-blank. adopt groupID from incoming XML even if not in MOBY namespace moby-live/Java/src/main/org/biomoby/shared/data MobyContentInstance.java,1.3,1.4 From senger at dev.open-bio.org Wed Sep 27 09:12:31 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Wed, 27 Sep 2006 05:12:31 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609270912.k8R9CVbZ001065@dev.open-bio.org> senger Wed Sep 27 05:12:31 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/generator In directory dev.open-bio.org:/tmp/cvs-serv1013/src/main/org/biomoby/service/generator Modified Files: DataTypesGenerator.java Log Message: moses fixed to avoid java keywords in article names moby-live/Java/src/main/org/biomoby/service/generator DataTypesGenerator.java,1.3,1.4 From senger at dev.open-bio.org Wed Sep 27 09:12:31 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Wed, 27 Sep 2006 05:12:31 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609270912.k8R9CVf1001046@dev.open-bio.org> senger Wed Sep 27 05:12:31 EDT 2006 Update of /home/repository/moby/moby-live/Java/docs In directory dev.open-bio.org:/tmp/cvs-serv1013/docs Modified Files: ChangeLog Log Message: moses fixed to avoid java keywords in article names moby-live/Java/docs ChangeLog,1.69,1.70 From senger at dev.open-bio.org Wed Sep 27 09:12:31 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Wed, 27 Sep 2006 05:12:31 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609270912.k8R9CVrs001084@dev.open-bio.org> senger Wed Sep 27 05:12:31 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared In directory dev.open-bio.org:/tmp/cvs-serv1013/src/main/org/biomoby/shared Modified Files: Utils.java Log Message: moses fixed to avoid java keywords in article names moby-live/Java/src/main/org/biomoby/shared Utils.java,1.14,1.15 From senger at dev.open-bio.org Wed Sep 27 09:12:31 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Wed, 27 Sep 2006 05:12:31 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609270912.k8R9CVtW001029@dev.open-bio.org> senger Wed Sep 27 05:12:31 EDT 2006 Update of /home/repository/moby/moby-live/Java In directory dev.open-bio.org:/tmp/cvs-serv1013 Modified Files: build.xml Log Message: moses fixed to avoid java keywords in article names moby-live/Java build.xml,1.57,1.58 From senger at dev.open-bio.org Wed Sep 27 11:15:59 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Wed, 27 Sep 2006 07:15:59 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609271115.k8RBFx4x001667@dev.open-bio.org> senger Wed Sep 27 07:15:59 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared In directory dev.open-bio.org:/tmp/cvs-serv1636/src/main/org/biomoby/shared Modified Files: Utils.java Log Message: moses - better escaping article names moby-live/Java/src/main/org/biomoby/shared Utils.java,1.15,1.16 From senger at dev.open-bio.org Wed Sep 27 11:15:59 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Wed, 27 Sep 2006 07:15:59 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609271115.k8RBFxCb001652@dev.open-bio.org> senger Wed Sep 27 07:15:58 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/dashboard In directory dev.open-bio.org:/tmp/cvs-serv1636/src/main/org/biomoby/service/dashboard Modified Files: RegistrationServiceSubPanel.java Log Message: moses - better escaping article names moby-live/Java/src/main/org/biomoby/service/dashboard RegistrationServiceSubPanel.java,1.10,1.11 From kawas at dev.open-bio.org Wed Sep 27 14:25:31 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Wed, 27 Sep 2006 10:25:31 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609271425.k8REPVjJ002024@dev.open-bio.org> kawas Wed Sep 27 10:25:30 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources In directory dev.open-bio.org:/tmp/cvs-serv1992/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources Modified Files: ServiceInstanceCache.java Log Message: moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources ServiceInstanceCache.java,1.2,1.3 From senger at dev.open-bio.org Thu Sep 28 11:54:32 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Thu, 28 Sep 2006 07:54:32 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609281154.k8SBsWNg008570@dev.open-bio.org> senger Thu Sep 28 07:54:32 EDT 2006 Update of /home/repository/moby/moby-live/Java/docs In directory dev.open-bio.org:/tmp/cvs-serv8554/docs Modified Files: ChangeLog Log Message: better XML escaping moby-live/Java/docs ChangeLog,1.70,1.71 From senger at dev.open-bio.org Thu Sep 28 11:54:32 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Thu, 28 Sep 2006 07:54:32 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609281154.k8SBsWQ6008585@dev.open-bio.org> senger Thu Sep 28 07:54:32 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client In directory dev.open-bio.org:/tmp/cvs-serv8554/src/main/org/biomoby/client Modified Files: CentralImpl.java Log Message: better XML escaping moby-live/Java/src/main/org/biomoby/client CentralImpl.java,1.45,1.46 From senger at dev.open-bio.org Thu Sep 28 13:32:07 2006 From: senger at dev.open-bio.org (Martin Senger) Date: Thu, 28 Sep 2006 09:32:07 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609281332.k8SDW7WZ008694@dev.open-bio.org> senger Thu Sep 28 09:32:06 EDT 2006 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/service/dashboard/help In directory dev.open-bio.org:/tmp/cvs-serv8678/src/main/org/biomoby/service/dashboard/help Modified Files: RegistrationPanel.html Log Message: help improved moby-live/Java/src/main/org/biomoby/service/dashboard/help RegistrationPanel.html,1.2,1.3 From kawas at dev.open-bio.org Thu Sep 28 19:54:43 2006 From: kawas at dev.open-bio.org (Eddie Kawas) Date: Thu, 28 Sep 2006 15:54:43 -0400 Subject: [MOBY-guts] biomoby commit Message-ID: <200609281954.k8SJshLW011191@dev.open-bio.org> kawas Thu Sep 28 15:54:43 EDT 2006 Update of /home/repository/moby/moby-live/Perl/MOBY In directory dev.open-bio.org:/tmp/cvs-serv11159 Modified Files: Central.pm Log Message: updated the findService so that it outputs XML that was created by LibXML. This should fix the escaping of & and other illegal xml characters. moby-live/Perl/MOBY Central.pm,1.255,1.256