[MOBY-guts] biomoby commit

[Paul Gordon]

gordonp
Thu Dec 14 14:38:34 EST 2006
Update of /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/resources
In directory dev.open-bio.org:/tmp/cvs-serv15533/src/main/ca/ucalgary/seahawk/resources

Modified Files:
	mobyBuilderRules.xml 
Log Message:
New rule for genbank flat files
moby-live/Java/src/main/ca/ucalgary/seahawk/resources mobyBuilderRules.xml,1.1,1.2
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/resources/mobyBuilderRules.xml,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/resources/mobyBuilderRules.xml	2006/10/25 02:33:22	1.1
+++ /home/repository/moby/moby-live/Java/src/main/ca/ucalgary/seahawk/resources/mobyBuilderRules.xml	2006/12/14 19:38:34	1.2
@@ -4,6 +4,15 @@
 <prefix value="tigr">http://www.bioxml.info/dtd/tigrxml.dtd</prefix>
 <prefix value="bioseq">http://www.bioxml.info/dtd/Bioseq.dtd</prefix>
 
+<object>
+  <regex>\s*(LOCUS\s+(\S+)(?:.*|\n)+?\n//(?:\n|$))</regex>
+  <namespace>
+    <ns value="NCBI_Acc">$2</ns>
+  </namespace>
+  <datatype value="genbank-flatfile"/>
+  <member value="content">$1</member>
+</object>
+
 <!-- a base object in the GO namespace -->
 <object>
   <regex>(?:GO|go):(\d{7})</regex>