[MOBY-guts] biomoby commit

[Frank Gibbons]

fgibbons
Tue Sep 27 20:24:26 EDT 2005
Update of /home/repository/moby/moby-live/Docs/MOBY-S_API/Perl
In directory pub.open-bio.org:/tmp/cvs-serv27515/Perl

Modified Files:
	ConstructingYourService.html RegisterAnObject.html 
	RegisterNamespace.html 
Log Message:
 - Added a URL.

moby-live/Docs/MOBY-S_API/Perl ConstructingYourService.html,1.2,1.3 RegisterAnObject.html,1.1,1.2 RegisterNamespace.html,1.1,1.2
===================================================================
RCS file: /home/repository/moby/moby-live/Docs/MOBY-S_API/Perl/ConstructingYourService.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Docs/MOBY-S_API/Perl/ConstructingYourService.html	2005/08/25 16:03:20	1.2
+++ /home/repository/moby/moby-live/Docs/MOBY-S_API/Perl/ConstructingYourService.html	2005/09/28 00:24:26	1.3
@@ -12,23 +12,27 @@
 MOBY-S Compliant Services </h2> First you need to check the following:
 <ul>
 
-<li> Do the object type(s) that your service will consume already
-exist in the Object Ontology? If not, <a
+<li> Do the object type(s) that your service will <em>consume</em> already
+exist in the 
+<a href="http://mobycentral.icapture.ubc.ca:8090/types/Objects">
+Object Ontology</a>? If not, <a
 href="DesignAnObject.html">learn how to design your own MOBY
 objects</a> </li>
 
-<li> Do the object type(s) that your service will produce already
-exist in the Object Ontology? If not, then you need to <a
+<li> Do the object type(s) that your service will <em>produce</em> already
+exist in the <a href="http://mobycentral.icapture.ubc.ca:8090/types/Objects">
+Object Ontology</a>? If not, then you need to <a
 href="RegisterAnObject.html"> register your objects</a> in the MOBY-S
 object/class ontology </li>
 
 <li> Does an appropriate service type term already exist in the
-Service Ontology? You need to <a
+<a href="http://mobycentral.icapture.ubc.ca:8090/types/Services">Service Ontology</a>? You need to <a
 href="RegisterServicetype.html">register your new service type</a> in
 the MOBY-S service ontology. </li>
 
-<li> Do the Namespaces that you are going to use in your objects
-already exist in the Service Ontology?  <a
+<li> Do the namespaces that you are going to use in your objects
+already exist in the <a href="http://mobycentral.icapture.ubc.ca:8090/types/Namespaces">
+Namespace Ontology</a>?  <a
 href="RegisterNamespace.html">Register your namespace</a>, if it
 doesn't already exist.</li>
 

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RCS file: /home/repository/moby/moby-live/Docs/MOBY-S_API/Perl/RegisterAnObject.html,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Docs/MOBY-S_API/Perl/RegisterAnObject.html	2005/08/25 14:02:54	1.1
+++ /home/repository/moby/moby-live/Docs/MOBY-S_API/Perl/RegisterAnObject.html	2005/09/28 00:24:26	1.2
@@ -10,6 +10,8 @@
 
 <h2><a name="RegisterObject"></a></a> 
 Using the Perl API to register an object </h2>
+MOBY already has a <a href="http://mobycentral.icapture.ubc.ca:8090/types/Objects">
+rather extensive ontology of data/object types</a>. Still, if you can't find what you need, you have to create your own.
 The signature for the registerObject method is as follows:
 <pre class=MOBYcode>
 my $REG = $MOBY->registerObject(

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RCS file: /home/repository/moby/moby-live/Docs/MOBY-S_API/Perl/RegisterNamespace.html,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Docs/MOBY-S_API/Perl/RegisterNamespace.html	2005/08/25 14:03:25	1.1
+++ /home/repository/moby/moby-live/Docs/MOBY-S_API/Perl/RegisterNamespace.html	2005/09/28 00:24:26	1.2
@@ -18,7 +18,10 @@
 that the ID referrs to.  For example, gi numbers <em>always</em>
 represent Genbank records, and identifiers in the format GO::0003346
 <em>always</em> represent Gene Ontology Terms.  As such, much of
-MOBY-S is built to take advantage of this predeictability.  <p />
+MOBY-S is built to take advantage of this predeictability. (An
+<a href="http://mobycentral.icapture.ubc.ca:8090/types/Namespaces">
+up-to-date list of currently available namespaces</a>, is available here.)
+<p />
 
 In MOBY-S, service providers will often define their interfaces in
 terms of Namespaces - i.e. they are saying "I know how to do something