[MOBY-guts] biomoby commit

[Martin Senger]

senger
Mon Sep 19 04:08:32 EDT 2005
Update of /home/repository/moby/moby-live/Java/src/Clients
In directory pub.open-bio.org:/tmp/cvs-serv29075/src/Clients

Modified Files:
	MobyCmdLineClient.java MobyDigestClient.java MobyGraphs.java 
	PopulateLocalCentralForTesting.java TestingCentral.java 
Log Message:
caching also namespaces

moby-live/Java/src/Clients MobyCmdLineClient.java,1.11,1.12 MobyDigestClient.java,1.2,1.3 MobyGraphs.java,1.9,1.10 PopulateLocalCentralForTesting.java,1.4,1.5 TestingCentral.java,1.5,1.6
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/Clients/MobyCmdLineClient.java,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -r1.11 -r1.12
--- /home/repository/moby/moby-live/Java/src/Clients/MobyCmdLineClient.java	2005/09/04 13:45:37	1.11
+++ /home/repository/moby/moby-live/Java/src/Clients/MobyCmdLineClient.java	2005/09/19 08:08:32	1.12
@@ -13,7 +13,6 @@
 import org.tulsoft.shared.StringUtils;
 import org.tulsoft.shared.GException;
 
-import java.net.*;
 import java.util.*;
 import java.io.*;
 

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/Clients/MobyDigestClient.java,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/src/Clients/MobyDigestClient.java	2005/09/04 13:45:37	1.2
+++ /home/repository/moby/moby-live/Java/src/Clients/MobyDigestClient.java	2005/09/19 08:08:32	1.3
@@ -1,7 +1,9 @@
 // MobyDigestClient.java
 //
-//    senger at ebi.ac.uk
-//    September 2004
+// Created: September 2004
+//
+// This file is a component of the BioMoby project.
+// Copyright Martin Senger (martin.senger at gmail.com).
 //
 
 import org.biomoby.shared.*;
@@ -11,12 +13,15 @@
 import org.tulsoft.shared.FileUtils;
 import org.tulsoft.shared.GException;
 
+import java.util.Map;
+import java.util.Iterator;
+
 /**
  * A simple client retrieving and printing cummulative (digestive)
  * registry entries. It can collaborate with the locally cached
  * registry entries. <p>
  *
- * @author <A HREF="mailto:senger at ebi.ac.uk">Martin Senger</A>
+ * @author <A HREF="mailto:martin.senger at gmail.com">Martin Senger</A>
  * @version $Id$
  */
 
@@ -101,6 +106,17 @@
 		}
 	    }
 
+	    // read all namespaces
+	    if (cmd.hasOption ("-n")) {
+		Map namespaces = worker.getNamespaces();
+		for (Iterator it = namespaces.entrySet().iterator(); it.hasNext(); ) {
+		    Map.Entry entry = (Map.Entry)it.next();
+		    System.out.println (entry.getKey());
+		    if (details)
+			System.out.println ("\t" + entry.getValue());
+		}
+	    }
+
 	} catch (Exception e) {
 	    System.err.println ("===ERROR===");
 	    e.printStackTrace();

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/Clients/MobyGraphs.java,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- /home/repository/moby/moby-live/Java/src/Clients/MobyGraphs.java	2005/09/04 13:45:37	1.9
+++ /home/repository/moby/moby-live/Java/src/Clients/MobyGraphs.java	2005/09/19 08:08:32	1.10
@@ -14,7 +14,6 @@
 import org.tulsoft.shared.FileUtils;
 import org.tulsoft.shared.GException;
 
-import java.net.*;
 import java.util.*;
 import java.io.*;
 

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/Clients/PopulateLocalCentralForTesting.java,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/src/Clients/PopulateLocalCentralForTesting.java	2005/05/19 15:57:24	1.4
+++ /home/repository/moby/moby-live/Java/src/Clients/PopulateLocalCentralForTesting.java	2005/09/19 08:08:32	1.5
@@ -7,9 +7,6 @@
 import org.biomoby.shared.*;
 import org.biomoby.client.*;
 
-import java.net.*;
-import java.util.*;
-
 /**
  * This is a very specialized client, meant solely for testing
  * purposes, and to be used on a local installation of a Moby Central

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/Clients/TestingCentral.java,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/moby-live/Java/src/Clients/TestingCentral.java	2005/08/31 00:48:39	1.5
+++ /home/repository/moby/moby-live/Java/src/Clients/TestingCentral.java	2005/09/19 08:08:32	1.6
@@ -8,7 +8,6 @@
 import org.biomoby.shared.*;
 import org.biomoby.client.*;
 
-import java.net.*;
 import java.util.*;
 
 /**