[MOBY-guts] biomoby commit

[Gary Schiltz]

gss
Wed Sep 14 18:06:55 EDT 2005
Update of /home/repository/moby/moby-live/S-MOBY/ref-impl/semanticmoby.org/src/org/semanticmoby/ref/tools/db
In directory pub.open-bio.org:/tmp/cvs-serv17172/src/org/semanticmoby/ref/tools/db

Modified Files:
	StorageManager.java 
Log Message:
Changed to work after major API overhaul

moby-live/S-MOBY/ref-impl/semanticmoby.org/src/org/semanticmoby/ref/tools/db StorageManager.java,1.2,1.3
===================================================================
RCS file: /home/repository/moby/moby-live/S-MOBY/ref-impl/semanticmoby.org/src/org/semanticmoby/ref/tools/db/StorageManager.java,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/S-MOBY/ref-impl/semanticmoby.org/src/org/semanticmoby/ref/tools/db/StorageManager.java	2005/03/21 21:42:02	1.2
+++ /home/repository/moby/moby-live/S-MOBY/ref-impl/semanticmoby.org/src/org/semanticmoby/ref/tools/db/StorageManager.java	2005/09/14 22:06:55	1.3
@@ -52,16 +52,16 @@
      * are in the provider graph's namespace will be stored in the global repository,
      * and all statements from the provider graph are stored in a separate model
      * that has as its name the fully expanded URI of the provider.
-     * @param provider the Provider to store
+     * @param service the Provider to store
      * @param lastModifiedDate when the graph was last modified
      * @throws StorageException if unable to access the database
      */
-	public void registerProvider(MOBYProvider provider, Date lastModifiedDate)
+	public void registerProvider(MOBYService service, Date lastModifiedDate)
         throws StorageException
 	{
-	    Model model = ((MOBYProvider) provider).getModel();
+	    Model model = service.getJenaModel();
         Model dbModel = null;
-        String uriString = provider.getResource().getURI();
+        String uriString = service.getResource().getURI();
         Resource uri = model.createResource(uriString);
         
         try
@@ -103,8 +103,8 @@
             
             // Add keywords associated with the provider
             //
-            KeywordFinder finder = new KeywordFinder(provider, model);
-            addKeywords(provider.getResource().getURI(),
+            KeywordFinder finder = new KeywordFinder(service);
+            addKeywords(service.getResource().getURI(),
             		    finder.getKeywords(), dbModel);
             
             // Commit the transaction on the database model
@@ -134,7 +134,7 @@
 			
 			java.sql.Statement sql = conn.createStatement();
 			
-			doAddKeywords(providerURI, list.getProviderKeywords(), "P", sql);
+			doAddKeywords(providerURI, list.getServiceKeywords(), "P", sql);
 			doAddKeywords(providerURI, list.getSubjectKeywords(), "S", sql);
 			doAddKeywords(providerURI, list.getObjectKeywords(), "O", sql);