[MOBY-guts] biomoby commit

[Eddie Kawas]

kawas
Wed Oct 19 18:27:22 EDT 2005
Update of /home/repository/moby/moby-live/Java/docs/taverna/guide
In directory pub.open-bio.org:/tmp/cvs-serv22255

Modified Files:
	index.html 
Log Message:
added a question/answer and modified the scavenger section.

moby-live/Java/docs/taverna/guide index.html,1.3,1.4
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/taverna/guide/index.html,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Java/docs/taverna/guide/index.html	2005/10/19 22:13:11	1.3
+++ /home/repository/moby/moby-live/Java/docs/taverna/guide/index.html	2005/10/19 22:27:22	1.4
@@ -10,6 +10,14 @@
 
 <title>The 'new' BioMoby plugin For Taverna</title>
 
+<style type="text/css">
+<!--
+.style3 {
+	font-size: 18px;
+	font-weight: bold;
+}
+-->
+</style>
 </head>
 
 
@@ -92,29 +100,21 @@
 
 				to create our scavenger. The information that we need to provide includes the URL of the BioMoby<br>
 
-				central registry that we would like to use, as well as the URL of the RDF document describing the<br>
-
-				BioMoby datatype ontology.</p>
+				central registry that we would like to use. <a href="./InstallingLocalMOBYCentral.html"><em><strong>Note that only registries that implement the newest BioMoby<br> 
+				API are supported.</strong></em></a></p>
 
 			<p><img src="./AddRegEndpoint.png" alt="Enter your registry details" width="630" height="75"></p>
 
-			<p>You may now be scratching your head, and are wondering why you have never heard of this RDF document.<br>
-
-				Currently, this location is undocumented in the Moby API, and the API will be supplemented with this information<br>
-
-				at a later time. At the time that this tutorial was written, there was only one location known for this RDF document<br>
-
-				and it is the default one in Taverna (shown above)
-
-				.</p>
-
 			<p>Once the information has been inputted into the text boxes, the Moby services and datatypes will now be available<br> 
 
 			as processors in the 'Available Services' window.</p>
 
 			<p><img src="./processorsView.png" alt="The service and datatype ontologies are illustrated" width="398" height="173"> </p>
 
-			<p>If you would like to work with your own custom Mobycentral registry and not that of the default, <em>http://mobycentral.icapture.ubc.ca/cgi-bin/MOBY05/mobycentral.pl</em>, then it is recommended that you edit the <strong>/taverna-workbench-1.3/conf/mygrid.properties </strong>file. In this file, modify the value for the property <em><strong>taverna.defaultbiomoby </strong></em>replacing the URL with that of your custom registry. </p>
+			<p>If you would like to work with your own custom Mobycentral registry and not that of the default, <em><br>
+			http://mobycentral.icapture.ubc.ca/cgi-bin/MOBY05/mobycentral.pl</em>, then it is recommended that you<br> 
+			edit the <strong>/taverna-workbench-1.3/conf/mygrid.properties </strong>file. In this file, modify the value for the <br>
+			property <em><strong>taverna.defaultbiomoby </strong></em>replacing the URL with that of your custom registry. </p>
 			<p>If you would like to host your own local custom registry, please <a href="./InstallingLocalMOBYCentral.html" target="_blank">click here</a>. </p>
 		</blockquote>
 
@@ -375,13 +375,19 @@
 	</blockquote>
 
     <h3>Comments / Questions</h3>
-
     <blockquote>
-
+    	<h4>Questions</h4>
+    	<ol>
+    		<li><strong>How does one go about installing a local registry?</strong>
+    			<blockquote>
+    				<p><em>To install your own registry, please go <a href="./InstallingLocalMOBYCentral.html">here.</a> </em></p>
+   				</blockquote>
+    		</li>
+        </ol>
+    	<p>&nbsp;</p>
     	<p>If you have any questions or comments, please feel free to contact Eddie Kawas @<br>
 
    		    <strong>edward</strong>[<em>DoT</em>]<strong>kawas</strong>[<em>AT</em>]<strong>gmail</strong>[<em>DoT</em>]<strong>com</strong></p>
-
     	<p>If you have any suggestions regarding new features or you would like to report a bug,<br>
 
     		please let me know.</p>