[MOBY-guts] biomoby commit
Gary Schiltz
gss at pub.open-bio.org
Wed Nov 23 23:57:02 UTC 2005
gss
Wed Nov 23 18:57:02 EST 2005
Update of /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies
In directory pub.open-bio.org:/tmp/cvs-serv18272/WebRoot/examples/proxies
Modified Files:
wormbase-query tair-seqviewer flybase-genequery
ncbi-megablast.n3 gramene-query.n3 sgd-quicksearch.n3
tair-seqviewer.n3 tair-mapviewer tair-mapviewer.n3 pubmed
ncbi-megablast sgd-quicksearch pubmed.n3 gramene-query
wormbase-query.n3 flybase-genequery.n3
Log Message:
Updated to remove keyword properties, add metadata properties
s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies wormbase-query,1.5,1.6 tair-seqviewer,1.6,1.7 flybase-genequery,1.5,1.6 ncbi-megablast.n3,1.5,1.6 gramene-query.n3,1.5,1.6 sgd-quicksearch.n3,1.6,1.7 tair-seqviewer.n3,1.6,1.7 tair-mapviewer,1.5,1.6 tair-mapviewer.n3,1.5,1.6 pubmed,1.5,1.6 ncbi-megablast,1.5,1.6 sgd-quicksearch,1.6,1.7 pubmed.n3,1.5,1.6 gramene-query,1.5,1.6 wormbase-query.n3,1.5,1.6 flybase-genequery.n3,1.6,1.7
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/wormbase-query,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/wormbase-query 2005/11/04 06:45:58 1.5
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/wormbase-query 2005/11/23 23:57:02 1.6
@@ -1,29 +1,27 @@
<rdf:RDF
xmlns:ex="http://www.semanticmoby.org/examples/proxies/"
- xmlns:exterms="http://www.semanticmoby.org/examples/ontologies/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:moby="http://www.semanticmoby.org/ontologies/core/" >
<rdf:Description rdf:nodeID="A0">
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Subject"/>
- <moby:mapsTo rdf:nodeID="A1"/>
- </rdf:Description>
- <rdf:Description rdf:nodeID="A1">
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
</rdf:Description>
- <rdf:Description rdf:nodeID="A2">
+ <rdf:Description rdf:nodeID="A1">
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Graph"/>
- <moby:hasMapping rdf:nodeID="A0"/>
+ <moby:hasMapping rdf:nodeID="A2"/>
</rdf:Description>
<rdf:Description rdf:about="http://www.semanticmoby.org/examples/proxies/wormbase-query">
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Resource"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/ProxyResource"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/ElegansSearchResource"/>
<moby:name>WormBase Query</moby:name>
<moby:oneLineDescription>C. elegans database query at wormbase.org</moby:oneLineDescription>
<moby:inputURI>http://www.wormbase.org/</moby:inputURI>
- <moby:operatesOn rdf:nodeID="A2"/>
+ <moby:metadata>http://www.semanticmoby.org/examples/proxies/wormbase-query-metadata.txt</moby:metadata>
+ <moby:operatesOn rdf:nodeID="A1"/>
+ </rdf:Description>
+ <rdf:Description rdf:nodeID="A2">
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Subject"/>
+ <moby:mapsTo rdf:nodeID="A0"/>
</rdf:Description>
-</rdf:RDF>
\ No newline at end of file
+</rdf:RDF>
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/tair-seqviewer,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/tair-seqviewer 2005/11/04 06:45:58 1.6
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/tair-seqviewer 2005/11/23 23:57:02 1.7
@@ -1,29 +1,27 @@
<rdf:RDF
xmlns:ex="http://www.semanticmoby.org/examples/proxies/"
- xmlns:exterms="http://www.semanticmoby.org/examples/ontologies/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:moby="http://www.semanticmoby.org/ontologies/core/" >
<rdf:Description rdf:nodeID="A0">
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Subject"/>
+ <moby:mapsTo rdf:nodeID="A1"/>
</rdf:Description>
- <rdf:Description rdf:nodeID="A1">
+ <rdf:Description rdf:nodeID="A2">
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Graph"/>
- <moby:hasMapping rdf:nodeID="A2"/>
+ <moby:hasMapping rdf:nodeID="A0"/>
</rdf:Description>
<rdf:Description rdf:about="http://www.semanticmoby.org/examples/proxies/tair-seqviewer">
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Resource"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/ProxyResource"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/ArabidopsisSearchResource"/>
<moby:name>TAIR Sequence Viewer</moby:name>
<moby:oneLineDescription>Arabidopsis Sequence Viewer resource provided by TAIR</moby:oneLineDescription>
<moby:inputURI>http://www.arabidopsis.org/servlets/sv</moby:inputURI>
- <moby:operatesOn rdf:nodeID="A1"/>
+ <moby:metadata>http://www.semanticmoby.org/examples/proxies/tair-seqviewer-metadata.txt</moby:metadata>
+ <moby:operatesOn rdf:nodeID="A2"/>
</rdf:Description>
- <rdf:Description rdf:nodeID="A2">
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Subject"/>
- <moby:mapsTo rdf:nodeID="A0"/>
+ <rdf:Description rdf:nodeID="A1">
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
</rdf:Description>
-</rdf:RDF>
\ No newline at end of file
+</rdf:RDF>
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/flybase-genequery,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/flybase-genequery 2005/11/04 06:45:58 1.5
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/flybase-genequery 2005/11/23 23:57:02 1.6
@@ -1,6 +1,5 @@
<rdf:RDF
xmlns:ex="http://www.semanticmoby.org/examples/proxies/"
- xmlns:exterms="http://www.semanticmoby.org/examples/ontologies/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
@@ -8,22 +7,21 @@
xmlns:moby="http://www.semanticmoby.org/ontologies/core/" >
<rdf:Description rdf:about="http://www.semanticmoby.org/examples/proxies/flybase-genequery">
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Resource"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/ProxyResource"/>
- <moby:operatesOn rdf:nodeID="A0"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/DrosophilaSearchResource"/>
<moby:name>FlyBase Gene Query</moby:name>
- <moby:inputURI>http://flybase.bio.indiana.edu/genes/fbgquery.hform</moby:inputURI>
<moby:oneLineDescription>FlyBase gene query form at flybase.bio.indiana.edu</moby:oneLineDescription>
+ <moby:inputURI>http://flybase.bio.indiana.edu/genes/fbgquery.hform</moby:inputURI>
+ <moby:metadata>http://www.semanticmoby.org/examples/proxies/flybase-genequery-metadata.txt</moby:metadata>
+ <moby:operatesOn rdf:nodeID="A0"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A1">
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Subject"/>
+ <moby:mapsTo rdf:nodeID="A2"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A0">
- <moby:hasMapping rdf:nodeID="A2"/>
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Graph"/>
+ <moby:hasMapping rdf:nodeID="A1"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A2">
- <moby:mapsTo rdf:nodeID="A1"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Subject"/>
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
</rdf:Description>
</rdf:RDF>
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/ncbi-megablast.n3,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/ncbi-megablast.n3 2005/11/04 06:45:58 1.5
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/ncbi-megablast.n3 2005/11/23 23:57:02 1.6
@@ -1,16 +1,16 @@
@prefix moby: <http://www.semanticmoby.org/ontologies/core/> .
@prefix ex: <http://www.semanticmoby.org/examples/proxies/> .
- at prefix exterms: <http://www.semanticmoby.org/examples/ontologies/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
ex:ncbi-megablast
- a moby:Resource, exterms:ProxyResource, exterms:BlastResource ;
+ a moby:Resource, ;
moby:name "NCBI Mega BLAST" ;
moby:oneLineDescription "NCBI MegaBlast resource provided by NCBI" ;
moby:inputURI "http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=50&ALIGNMENT_VIEW=Tabular&CLIENT=web&DATABASE=nr&DESCRIPTIONS=100&ENTREZ_QUERY=%28none%29&EXPECT=10&FILTER=L&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&NCBI_GI=on&PAGE=MegaBlast&SERVICE=plain&SET_DEFAULTS.x=34&SET_DEFAULTS.y=8&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&PERC_IDENT=None,1,-2" ;
+ moby:metadata "http://www.semanticmoby.org/examples/proxies/ncbi-megablast-metadata.txt";
moby:operatesOn [
a moby:Graph ;
moby:hasMapping [
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/gramene-query.n3,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/gramene-query.n3 2005/11/04 06:45:58 1.5
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/gramene-query.n3 2005/11/23 23:57:02 1.6
@@ -1,16 +1,16 @@
@prefix moby: <http://www.semanticmoby.org/ontologies/core/> .
@prefix ex: <http://www.semanticmoby.org/examples/proxies/> .
- at prefix exterms: <http://www.semanticmoby.org/examples/ontologies/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
ex:gramene-query
- a moby:Resource, exterms:ProxyResource, exterms:CerealGrainSearchResource ;
+ a moby:Resource ;
moby:name "Gramene Query" ;
moby:oneLineDescription "Cereal grains database query at gramene.org" ;
moby:inputURI "http://www.gramene.org/" ;
+ moby:metadata "http://www.semanticmoby.org/examples/proxies/gramene-query-metadata.txt";
moby:operatesOn [
a moby:Graph ;
moby:hasMapping [
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/sgd-quicksearch.n3,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/sgd-quicksearch.n3 2005/11/04 06:45:58 1.6
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/sgd-quicksearch.n3 2005/11/23 23:57:02 1.7
@@ -1,22 +1,22 @@
@prefix moby: <http://www.semanticmoby.org/ontologies/core/> .
@prefix ex: <http://www.semanticmoby.org/examples/proxies/> .
- at prefix exterms: <http://www.semanticmoby.org/examples/ontologies/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
ex:sgd-quicksearch
- a moby:Resource, exterms:ProxyResource, exterms:SacchromycesSearchResource ;
+ a moby:Resource ;
moby:name "SGD Quick Search" ;
moby:oneLineDescription "Saccharomyces cerevisiae quick search" ;
moby:inputURI "http://db.yeastgenome.org/cgi-bin/search/quickSearch" ;
+ moby:metadata "http://www.semanticmoby.org/examples/proxies/sgd-quicksearch-metadata.txt";
moby:operatesOn [
a moby:Graph ;
moby:hasMapping [
- a moby:Subject, exterms:GeneSymbol ;
+ a moby:Subject ;
moby:mapsTo [
- a moby:Object, exterms:GeneDetails
+ a moby:Object
]
]
] .
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/tair-seqviewer.n3,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/tair-seqviewer.n3 2005/11/04 06:45:58 1.6
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/tair-seqviewer.n3 2005/11/23 23:57:02 1.7
@@ -1,16 +1,16 @@
@prefix moby: <http://www.semanticmoby.org/ontologies/core/> .
@prefix ex: <http://www.semanticmoby.org/examples/proxies/> .
- at prefix exterms: <http://www.semanticmoby.org/examples/ontologies/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
ex:tair-seqviewer
- a moby:Resource, exterms:ProxyResource, exterms:ArabidopsisSearchResource ;
+ a moby:Resource ;
moby:name "TAIR Sequence Viewer" ;
moby:oneLineDescription "Arabidopsis Sequence Viewer resource provided by TAIR" ;
moby:inputURI "http://www.arabidopsis.org/servlets/sv" ;
+ moby:metadata "http://www.semanticmoby.org/examples/proxies/tair-seqviewer-metadata.txt";
moby:operatesOn [
a moby:Graph ;
moby:hasMapping [
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/tair-mapviewer,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/tair-mapviewer 2005/11/04 06:45:58 1.5
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/tair-mapviewer 2005/11/23 23:57:02 1.6
@@ -1,6 +1,5 @@
<rdf:RDF
xmlns:ex="http://www.semanticmoby.org/examples/proxies/"
- xmlns:exterms="http://www.semanticmoby.org/examples/ontologies/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
@@ -8,21 +7,20 @@
xmlns:moby="http://www.semanticmoby.org/ontologies/core/" >
<rdf:Description rdf:about="http://www.semanticmoby.org/examples/proxies/tair-mapviewer">
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Resource"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/ProxyResource"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/ArabidopsisSearchResource"/>
<moby:name>TAIR Map Viewer</moby:name>
<moby:oneLineDescription>Arabidopsis Map Viewer resource provided by TAIR</moby:oneLineDescription>
<moby:inputURI>http://www.arabidopsis.org/servlets/mapper</moby:inputURI>
+ <moby:metadata>http://www.semanticmoby.org/examples/proxies/tair-mapviewer-metadata.txt</moby:metadata>
<moby:operatesOn rdf:nodeID="A0"/>
</rdf:Description>
- <rdf:Description rdf:nodeID="A0">
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Graph"/>
- <moby:hasMapping rdf:nodeID="A1"/>
- </rdf:Description>
<rdf:Description rdf:nodeID="A1">
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Subject"/>
<moby:mapsTo rdf:nodeID="A2"/>
</rdf:Description>
+ <rdf:Description rdf:nodeID="A0">
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Graph"/>
+ <moby:hasMapping rdf:nodeID="A1"/>
+ </rdf:Description>
<rdf:Description rdf:nodeID="A2">
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
</rdf:Description>
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/tair-mapviewer.n3,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/tair-mapviewer.n3 2005/11/04 06:45:58 1.5
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/tair-mapviewer.n3 2005/11/23 23:57:02 1.6
@@ -1,16 +1,16 @@
@prefix moby: <http://www.semanticmoby.org/ontologies/core/> .
@prefix ex: <http://www.semanticmoby.org/examples/proxies/> .
- at prefix exterms: <http://www.semanticmoby.org/examples/ontologies/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
ex:tair-mapviewer
- a moby:Resource, exterms:ProxyResource, exterms:ArabidopsisSearchResource ;
+ a moby:Resource ;
moby:name "TAIR Map Viewer" ;
moby:oneLineDescription "Arabidopsis Map Viewer resource provided by TAIR" ;
moby:inputURI "http://www.arabidopsis.org/servlets/mapper" ;
+ moby:metadata "http://www.semanticmoby.org/examples/proxies/tair-mapviewer-metadata.txt";
moby:operatesOn [
a moby:Graph ;
moby:hasMapping [
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/pubmed,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/pubmed 2005/11/04 06:45:58 1.5
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/pubmed 2005/11/23 23:57:02 1.6
@@ -1,6 +1,5 @@
<rdf:RDF
xmlns:ex="http://www.semanticmoby.org/examples/proxies/"
- xmlns:exterms="http://www.semanticmoby.org/examples/ontologies/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
@@ -10,20 +9,19 @@
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Graph"/>
<moby:hasMapping rdf:nodeID="A1"/>
</rdf:Description>
- <rdf:Description rdf:nodeID="A2">
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
- </rdf:Description>
<rdf:Description rdf:about="http://www.semanticmoby.org/examples/proxies/pubmed">
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Resource"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/ProxyResource"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/PubSearchResource"/>
<moby:name>PubMed</moby:name>
<moby:oneLineDescription>Entrez PubMed resource provided by NCBI</moby:oneLineDescription>
<moby:inputURI>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?</moby:inputURI>
+ <moby:metadata>http://www.semanticmoby.org/examples/proxies/pubmed-metadata.txt</moby:metadata>
<moby:operatesOn rdf:nodeID="A0"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A1">
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Subject"/>
<moby:mapsTo rdf:nodeID="A2"/>
</rdf:Description>
-</rdf:RDF>
\ No newline at end of file
+ <rdf:Description rdf:nodeID="A2">
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
+ </rdf:Description>
+</rdf:RDF>
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/ncbi-megablast,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/ncbi-megablast 2005/11/04 06:45:58 1.5
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/ncbi-megablast 2005/11/23 23:57:02 1.6
@@ -1,29 +1,27 @@
<rdf:RDF
xmlns:ex="http://www.semanticmoby.org/examples/proxies/"
- xmlns:exterms="http://www.semanticmoby.org/examples/ontologies/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:moby="http://www.semanticmoby.org/ontologies/core/" >
<rdf:Description rdf:nodeID="A0">
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Subject"/>
- <moby:mapsTo rdf:nodeID="A1"/>
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Graph"/>
+ <moby:hasMapping rdf:nodeID="A1"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A2">
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Graph"/>
- <moby:hasMapping rdf:nodeID="A0"/>
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A1">
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Subject"/>
+ <moby:mapsTo rdf:nodeID="A2"/>
</rdf:Description>
<rdf:Description rdf:about="http://www.semanticmoby.org/examples/proxies/ncbi-megablast">
- <moby:name>NCBI Mega BLAST</moby:name>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/BlastResource"/>
- <moby:inputURI>http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=50&ALIGNMENT_VIEW=Tabular&CLIENT=web&DATABASE=nr&DESCRIPTIONS=100&ENTREZ_QUERY=%28none%29&EXPECT=10&FILTER=L&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&NCBI_GI=on&PAGE=MegaBlast&SERVICE=plain&SET_DEFAULTS.x=34&SET_DEFAULTS.y=8&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&PERC_IDENT=None,1,-2</moby:inputURI>
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Resource"/>
- <moby:operatesOn rdf:nodeID="A2"/>
+ <moby:name>NCBI Mega BLAST</moby:name>
<moby:oneLineDescription>NCBI MegaBlast resource provided by NCBI</moby:oneLineDescription>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/ProxyResource"/>
+ <moby:inputURI>http://www.ncbi.nlm.nih.gov/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=50&ALIGNMENT_VIEW=Tabular&CLIENT=web&DATABASE=nr&DESCRIPTIONS=100&ENTREZ_QUERY=%28none%29&EXPECT=10&FILTER=L&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&NCBI_GI=on&PAGE=MegaBlast&SERVICE=plain&SET_DEFAULTS.x=34&SET_DEFAULTS.y=8&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&PERC_IDENT=None,1,-2</moby:inputURI>
+ <moby:metadata>http://www.semanticmoby.org/examples/proxies/ncbi-megablast-metadata.txt</moby:metadata>
+ <moby:operatesOn rdf:nodeID="A0"/>
</rdf:Description>
</rdf:RDF>
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/sgd-quicksearch,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/sgd-quicksearch 2005/11/04 06:45:58 1.6
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/sgd-quicksearch 2005/11/23 23:57:02 1.7
@@ -1,6 +1,5 @@
<rdf:RDF
xmlns:ex="http://www.semanticmoby.org/examples/proxies/"
- xmlns:exterms="http://www.semanticmoby.org/examples/ontologies/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
@@ -8,24 +7,21 @@
xmlns:moby="http://www.semanticmoby.org/ontologies/core/" >
<rdf:Description rdf:nodeID="A0">
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Subject"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/GeneSymbol"/>
<moby:mapsTo rdf:nodeID="A1"/>
</rdf:Description>
- <rdf:Description rdf:nodeID="A2">
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Graph"/>
- <moby:hasMapping rdf:nodeID="A0"/>
- </rdf:Description>
- <rdf:Description rdf:nodeID="A1">
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/GeneDetails"/>
- </rdf:Description>
<rdf:Description rdf:about="http://www.semanticmoby.org/examples/proxies/sgd-quicksearch">
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Resource"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/ProxyResource"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/SacchromycesSearchResource"/>
<moby:name>SGD Quick Search</moby:name>
<moby:oneLineDescription>Saccharomyces cerevisiae quick search</moby:oneLineDescription>
<moby:inputURI>http://db.yeastgenome.org/cgi-bin/search/quickSearch</moby:inputURI>
+ <moby:metadata>http://www.semanticmoby.org/examples/proxies/sgd-quicksearch-metadata.txt</moby:metadata>
<moby:operatesOn rdf:nodeID="A2"/>
</rdf:Description>
+ <rdf:Description rdf:nodeID="A2">
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Graph"/>
+ <moby:hasMapping rdf:nodeID="A0"/>
+ </rdf:Description>
+ <rdf:Description rdf:nodeID="A1">
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
+ </rdf:Description>
</rdf:RDF>
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/pubmed.n3,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/pubmed.n3 2005/11/04 06:45:58 1.5
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/pubmed.n3 2005/11/23 23:57:02 1.6
@@ -1,16 +1,16 @@
@prefix moby: <http://www.semanticmoby.org/ontologies/core/> .
@prefix ex: <http://www.semanticmoby.org/examples/proxies/> .
- at prefix exterms: <http://www.semanticmoby.org/examples/ontologies/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
ex:pubmed
- a moby:Resource, exterms:ProxyResource, exterms:PubSearchResource ;
+ a moby:Resource ;
moby:name "PubMed" ;
moby:oneLineDescription "Entrez PubMed resource provided by NCBI" ;
moby:inputURI "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?" ;
+ moby:metadata "http://www.semanticmoby.org/examples/proxies/pubmed-metadata.txt";
moby:operatesOn [
a moby:Graph ;
moby:hasMapping [
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/gramene-query,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/gramene-query 2005/11/04 06:45:58 1.5
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/gramene-query 2005/11/23 23:57:02 1.6
@@ -1,29 +1,27 @@
<rdf:RDF
xmlns:ex="http://www.semanticmoby.org/examples/proxies/"
- xmlns:exterms="http://www.semanticmoby.org/examples/ontologies/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:moby="http://www.semanticmoby.org/ontologies/core/" >
<rdf:Description rdf:nodeID="A0">
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Subject"/>
+ <moby:mapsTo rdf:nodeID="A1"/>
+ </rdf:Description>
+ <rdf:Description rdf:nodeID="A2">
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Graph"/>
+ <moby:hasMapping rdf:nodeID="A0"/>
</rdf:Description>
<rdf:Description rdf:nodeID="A1">
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Subject"/>
- <moby:mapsTo rdf:nodeID="A0"/>
+ <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Object"/>
</rdf:Description>
<rdf:Description rdf:about="http://www.semanticmoby.org/examples/proxies/gramene-query">
- <moby:name>Gramene Query</moby:name>
<rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Resource"/>
+ <moby:name>Gramene Query</moby:name>
+ <moby:oneLineDescription>Cereal grains database query at gramene.org</moby:oneLineDescription>
<moby:inputURI>http://www.gramene.org/</moby:inputURI>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/ProxyResource"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/examples/ontologies/CerealGrainSearchResource"/>
+ <moby:metadata>http://www.semanticmoby.org/examples/proxies/gramene-query-metadata.txt</moby:metadata>
<moby:operatesOn rdf:nodeID="A2"/>
- <moby:oneLineDescription>Cereal grains database query at gramene.org</moby:oneLineDescription>
- </rdf:Description>
- <rdf:Description rdf:nodeID="A2">
- <moby:hasMapping rdf:nodeID="A1"/>
- <rdf:type rdf:resource="http://www.semanticmoby.org/ontologies/core/Graph"/>
</rdf:Description>
-</rdf:RDF>
\ No newline at end of file
+</rdf:RDF>
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/wormbase-query.n3,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/wormbase-query.n3 2005/11/04 06:45:58 1.5
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/wormbase-query.n3 2005/11/23 23:57:02 1.6
@@ -1,16 +1,16 @@
@prefix moby: <http://www.semanticmoby.org/ontologies/core/> .
@prefix ex: <http://www.semanticmoby.org/examples/proxies/> .
- at prefix exterms: <http://www.semanticmoby.org/examples/ontologies/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
ex:wormbase-query
- a moby:Resource, exterms:ProxyResource, exterms:ElegansSearchResource ;
+ a moby:Resource ;
moby:name "WormBase Query" ;
moby:oneLineDescription "C. elegans database query at wormbase.org" ;
moby:inputURI "http://www.wormbase.org/" ;
+ moby:metadata "http://www.semanticmoby.org/examples/proxies/wormbase-query-metadata.txt";
moby:operatesOn [
a moby:Graph ;
moby:hasMapping [
===================================================================
RCS file: /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/flybase-genequery.n3,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/flybase-genequery.n3 2005/11/04 06:45:58 1.6
+++ /home/repository/moby/s-moby/ref-impl/semanticmoby.org/WebRoot/examples/proxies/flybase-genequery.n3 2005/11/23 23:57:02 1.7
@@ -1,16 +1,16 @@
@prefix moby: <http://www.semanticmoby.org/ontologies/core/> .
@prefix ex: <http://www.semanticmoby.org/examples/proxies/> .
- at prefix exterms: <http://www.semanticmoby.org/examples/ontologies/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
ex:flybase-genequery
- a moby:Resource, exterms:ProxyResource, exterms:DrosophilaSearchResource ;
+ a moby:Resource ;
moby:name "FlyBase Gene Query" ;
moby:oneLineDescription "FlyBase gene query form at flybase.bio.indiana.edu" ;
moby:inputURI "http://flybase.bio.indiana.edu/genes/fbgquery.hform" ;
+ moby:metadata "http://www.semanticmoby.org/examples/proxies/flybase-genequery-metadata.txt";
moby:operatesOn [
a moby:Graph ;
moby:hasMapping [
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