[MOBY-guts] biomoby commit

Martin Senger senger at pub.open-bio.org
Sun Nov 20 12:30:51 UTC 2005


senger
Sun Nov 20 07:30:51 EST 2005
Update of /home/repository/moby/moby-live/Java/src/config
In directory pub.open-bio.org:/tmp/cvs-serv4966/src/config

Modified Files:
	RDFagent_config.xml run-any-client.bat run-cache-client.bat 
	run-cmdline-client.bat run-dashboard run-dashboard.bat 
	run-digest-client.bat run-generator.bat run-graphs-client.bat 
	run-moby-parser.bat run-service.bat run-testing-central.bat 
Log Message:


moby-live/Java/src/config RDFagent_config.xml,1.1,1.2 run-any-client.bat,1.5,1.6 run-cache-client.bat,1.3,1.4 run-cmdline-client.bat,1.4,1.5 run-dashboard,1.2,1.3 run-dashboard.bat,1.3,1.4 run-digest-client.bat,1.3,1.4 run-generator.bat,1.3,1.4 run-graphs-client.bat,1.3,1.4 run-moby-parser.bat,1.3,1.4 run-service.bat,1.3,1.4 run-testing-central.bat,1.3,1.4
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/config/RDFagent_config.xml,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/config/RDFagent_config.xml	2004/10/28 17:54:02	1.1
+++ /home/repository/moby/moby-live/Java/src/config/RDFagent_config.xml	2005/11/20 12:30:51	1.2
@@ -1,32 +1,33 @@
-<?xml version="1.0" encoding="ISO-8859-1"?>
+<?xml version="1.0" encoding="ISO-8859-1"?>
 
-<configFile>
-  <moby>
-     <adminEmail>mwilkinson at mrl.ubc.ca</adminEmail>
-     <subject>RDFagent warning  </subject>
-     <errMessage></errMessage>
-     <mailServer>mail.cbr.nrc.ca</mailServer>
-     <mailUser></mailUser>
-     <mailPswd></mailPswd>
-     <from>rdf_agent at cbr.nrc.ca</from>
-  </moby>
-  <serviceProvider>
-      <subject>RDFagent warning </subject>
-      <errMesConnect>Connect was refused with HTTP code </errMesConnect>
-  </serviceProvider>
-  <serviceValidator>
-       <db>
-           <driver>com.mysql.jdbc.Driver</driver>
-           <url>jdbc:mysql://localhost/mobycentral</url>
-           <name>mobycentral</name>
-           <user>moby</user>
-           <passwd>moby</passwd>
-           <port>3306</port>
-       </db>
-       <logFilePath>/RDFagent.log </logFilePath>
-       <reportFilePath>/RDFagent_report</reportFilePath>
-       <deletedFilePath>/RDFagent_delServices</deletedFilePath>
-       <signURLFilePath>/RDFagent_signURLlist</signURLFilePath>
-       <logLevel> 3 </logLevel>
   
-  </serviceValidator>
+<configFile>
+  <moby>
+     <adminEmail>mwilkinson at mrl.ubc.ca</adminEmail>
+     <subject>RDFagent warning  </subject>
+     <errMessage></errMessage>
+     <mailServer>mail.cbr.nrc.ca</mailServer>
+     <mailUser></mailUser>
+     <mailPswd></mailPswd>
+     <from>rdf_agent at cbr.nrc.ca</from>
+  </moby>
+  <serviceProvider>
+      <subject>RDFagent warning </subject>
+      <errMesConnect>Connect was refused with HTTP code </errMesConnect>
+  </serviceProvider>
+  <serviceValidator>
+       <db>
+           <driver>com.mysql.jdbc.Driver</driver>
+           <url>jdbc:mysql://localhost/mobycentral</url>
+           <name>mobycentral</name>
+           <user>moby</user>
+           <passwd>moby</passwd>
+           <port>3306</port>
+       </db>
+       <logFilePath>/RDFagent.log </logFilePath>
+       <reportFilePath>/RDFagent_report</reportFilePath>
+       <deletedFilePath>/RDFagent_delServices</deletedFilePath>
+       <signURLFilePath>/RDFagent_signURLlist</signURLFilePath>
+       <logLevel> 3 </logLevel>
+   
+  </serviceValidator>
 </configFile>
\ No newline at end of file

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/config/run-any-client.bat,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- /home/repository/moby/moby-live/Java/src/config/run-any-client.bat	2005/09/21 05:26:18	1.5
+++ /home/repository/moby/moby-live/Java/src/config/run-any-client.bat	2005/11/20 12:30:51	1.6
@@ -1,13 +1,14 @@
- at echo off
-
-set "PROJECT_HOME=@PROJECT_HOME@"
-cd "%PROJECT_HOME%"
-set CP=
-for %%i in (lib\*.jar) do call cp.bat %%i
-set CP=build\classes;%CP%
-set CP=build\Clients;%CP%
-set CP=build\others\datatypes;%CP%
-set CP=build\others\skeletons;%CP%
-set CP=build\others\samples;%CP%
-
-java -classpath "%CP%" %1 %2 %3 %4 %5 %6 %7 %8 %9
+ at echo off
+
+set "PROJECT_HOME=@PROJECT_HOME@"
+cd "%PROJECT_HOME%"
+set CP=
+for %%i in (lib\*.jar) do call cp.bat %%i
+for %%i in (lib\ant_home\lib\*.jar) do call cp.bat %%i
+set CP=build\classes;%CP%
+set CP=build\Clients;%CP%
+set CP=build\others\datatypes;%CP%
+set CP=build\others\skeletons;%CP%
+set CP=build\others\samples;%CP%
+
+java -classpath "%CP%" %*

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/config/run-cache-client.bat,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Java/src/config/run-cache-client.bat	2005/09/21 05:26:18	1.3
+++ /home/repository/moby/moby-live/Java/src/config/run-cache-client.bat	2005/11/20 12:30:51	1.4
@@ -1,10 +1,10 @@
- at echo off
-
-set "PROJECT_HOME=@PROJECT_HOME@"
-cd "%PROJECT_HOME%"
-set CP=
-for %%i in (lib\*.jar) do call cp.bat %%i
-set CP=build\classes;%CP%
-set CP=build\Clients;%CP%
-
-java -classpath "%CP%" CacheRegistryClient  %1 %2 %3 %4 %5 %6 %7 %8 %9
+ at echo off
+
+set "PROJECT_HOME=@PROJECT_HOME@"
+cd "%PROJECT_HOME%"
+set CP=
+for %%i in (lib\*.jar) do call cp.bat %%i
+set CP=build\classes;%CP%
+set CP=build\Clients;%CP%
+
+java -classpath "%CP%" CacheRegistryClient  %*

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/config/run-cmdline-client.bat,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/src/config/run-cmdline-client.bat	2005/09/21 05:26:18	1.4
+++ /home/repository/moby/moby-live/Java/src/config/run-cmdline-client.bat	2005/11/20 12:30:51	1.5
@@ -7,4 +7,4 @@
 set CP=build\classes;%CP%
 set CP=build\Clients;%CP%
 
-java -classpath "%CP%" MobyCmdLineClient %1 %2 %3 %4 %5 %6 %7 %8 %9
+java -classpath "%CP%" MobyCmdLineClient %*

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/config/run-dashboard,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/src/config/run-dashboard	2005/09/21 06:13:28	1.2
+++ /home/repository/moby/moby-live/Java/src/config/run-dashboard	2005/11/20 12:30:51	1.3
@@ -14,5 +14,6 @@
 CLASSPATH=${PROJECT_HOME}/build/others/samples:$CLASSPATH
 CLASSPATH=${PROJECT_HOME}/build/lib/dashboard-config.jar:$CLASSPATH
 CLASSPATH=`echo ${PROJECT_HOME}/lib/*.jar | tr ' ' ':'`:$CLASSPATH
+CLASSPATH=`echo ${PROJECT_HOME}/lib/ant_home/lib/*.jar | tr ' ' ':'`:$CLASSPATH
 
 exec java -cp $CLASSPATH org.biomoby.service.dashboard.Dashboard "$@"

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/config/run-dashboard.bat,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Java/src/config/run-dashboard.bat	2005/09/21 06:13:28	1.3
+++ /home/repository/moby/moby-live/Java/src/config/run-dashboard.bat	2005/11/20 12:30:51	1.4
@@ -1,14 +1,15 @@
- at echo off
-
-set "PROJECT_HOME=@PROJECT_HOME@"
-cd "%PROJECT_HOME%"
-set CP=
-for %%i in (lib\*.jar) do call cp.bat %%i
-set CP=build\classes;%CP%
-set CP=build\Clients;%CP%
-set CP=build\others\datatypes;%CP%
-set CP=build\others\skeletons;%CP%
-set CP=build\others\samples;%CP%
-set CP=build\lib\dashboard-config.jar;%CP%
-
-java -classpath "%CP%" org.biomoby.service.dashboard.Dashboard  %1 %2 %3 %4 %5 %6 %7 %8 %9
+ at echo off
+
+set "PROJECT_HOME=@PROJECT_HOME@"
+cd "%PROJECT_HOME%"
+set CP=
+for %%i in (lib\*.jar) do call cp.bat %%i
+for %%i in (lib\ant_home\lib\*.jar) do call cp.bat %%i
+set CP=build\classes;%CP%
+set CP=build\Clients;%CP%
+set CP=build\others\datatypes;%CP%
+set CP=build\others\skeletons;%CP%
+set CP=build\others\samples;%CP%
+set CP=build\lib\dashboard-config.jar;%CP%
+
+java -classpath "%CP%" org.biomoby.service.dashboard.Dashboard  %*

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/config/run-digest-client.bat,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Java/src/config/run-digest-client.bat	2005/09/21 05:26:18	1.3
+++ /home/repository/moby/moby-live/Java/src/config/run-digest-client.bat	2005/11/20 12:30:51	1.4
@@ -1,10 +1,10 @@
- at echo off
-
-set "PROJECT_HOME=@PROJECT_HOME@"
-cd "%PROJECT_HOME%"
-set CP=
-for %%i in (lib\*.jar) do call cp.bat %%i
-set CP=build\classes;%CP%
-set CP=build\Clients;%CP%
-
-java -classpath "%CP%" MobyDigestClient  %1 %2 %3 %4 %5 %6 %7 %8 %9
+ at echo off
+
+set "PROJECT_HOME=@PROJECT_HOME@"
+cd "%PROJECT_HOME%"
+set CP=
+for %%i in (lib\*.jar) do call cp.bat %%i
+set CP=build\classes;%CP%
+set CP=build\Clients;%CP%
+
+java -classpath "%CP%" MobyDigestClient  %*

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/config/run-generator.bat,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Java/src/config/run-generator.bat	2005/09/21 05:26:18	1.3
+++ /home/repository/moby/moby-live/Java/src/config/run-generator.bat	2005/11/20 12:30:51	1.4
@@ -1,12 +1,12 @@
- at echo off
-
-set "PROJECT_HOME=@PROJECT_HOME@"
-cd "%PROJECT_HOME%"
-set CP=
-for %%i in (lib\*.jar) do call cp.bat %%i
-set CP=build\classes;%CP%
-set CP=build\Clients;%CP%
-set CP=build\others\datatypes;%CP%
-set CP=build\others\skeletons;%CP%
-
-java -classpath "%CP%" MosesGenerators  %1 %2 %3 %4 %5 %6 %7 %8 %9
+ at echo off
+
+set "PROJECT_HOME=@PROJECT_HOME@"
+cd "%PROJECT_HOME%"
+set CP=
+for %%i in (lib\*.jar) do call cp.bat %%i
+set CP=build\classes;%CP%
+set CP=build\Clients;%CP%
+set CP=build\others\datatypes;%CP%
+set CP=build\others\skeletons;%CP%
+
+java -classpath "%CP%" MosesGenerators  %*

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/config/run-graphs-client.bat,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Java/src/config/run-graphs-client.bat	2005/09/21 05:26:18	1.3
+++ /home/repository/moby/moby-live/Java/src/config/run-graphs-client.bat	2005/11/20 12:30:51	1.4
@@ -1,10 +1,10 @@
- at echo off
-
-set "PROJECT_HOME=@PROJECT_HOME@"
-cd "%PROJECT_HOME%"
-set CP=
-for %%i in (lib\*.jar) do call cp.bat %%i
-set CP=build\classes;%CP%
-set CP=build\Clients;%CP%
-
-java -classpath "%CP%" MobyGraphs  %1 %2 %3 %4 %5 %6 %7 %8 %9
+ at echo off
+
+set "PROJECT_HOME=@PROJECT_HOME@"
+cd "%PROJECT_HOME%"
+set CP=
+for %%i in (lib\*.jar) do call cp.bat %%i
+set CP=build\classes;%CP%
+set CP=build\Clients;%CP%
+
+java -classpath "%CP%" MobyGraphs  %*

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/config/run-moby-parser.bat,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Java/src/config/run-moby-parser.bat	2005/09/21 05:26:18	1.3
+++ /home/repository/moby/moby-live/Java/src/config/run-moby-parser.bat	2005/11/20 12:30:51	1.4
@@ -1,11 +1,11 @@
- at echo off
-
-set "PROJECT_HOME=@PROJECT_HOME@"
-cd "%PROJECT_HOME%"
-set CP=
-for %%i in (lib\*.jar) do call cp.bat %%i
-set CP=build\classes;%CP%
-set CP=build\Clients;%CP%
-set CP=build\others\datatypes;%CP%
-
-java -classpath "%CP%" TestingMobyParser  %1 %2 %3 %4 %5 %6 %7 %8 %9
+ at echo off
+
+set "PROJECT_HOME=@PROJECT_HOME@"
+cd "%PROJECT_HOME%"
+set CP=
+for %%i in (lib\*.jar) do call cp.bat %%i
+set CP=build\classes;%CP%
+set CP=build\Clients;%CP%
+set CP=build\others\datatypes;%CP%
+
+java -classpath "%CP%" TestingMobyParser  %*

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/config/run-service.bat,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Java/src/config/run-service.bat	2005/09/21 05:26:18	1.3
+++ /home/repository/moby/moby-live/Java/src/config/run-service.bat	2005/11/20 12:30:51	1.4
@@ -1,13 +1,13 @@
- at echo off
-
-set "PROJECT_HOME=@PROJECT_HOME@"
-cd "%PROJECT_HOME%"
-set CP=
-for %%i in (lib\*.jar) do call cp.bat %%i
-set CP=build\classes;%CP%
-set CP=build\Clients;%CP%
-set CP=build\others\datatypes;%CP%
-set CP=build\others\skeletons;%CP%
-set CP=build\others\samples;%CP%
-
-java -classpath "%CP%" org.biomoby.client.BaseCmdLineClient  %1 %2 %3 %4 %5 %6 %7 %8 %9
+ at echo off
+
+set "PROJECT_HOME=@PROJECT_HOME@"
+cd "%PROJECT_HOME%"
+set CP=
+for %%i in (lib\*.jar) do call cp.bat %%i
+set CP=build\classes;%CP%
+set CP=build\Clients;%CP%
+set CP=build\others\datatypes;%CP%
+set CP=build\others\skeletons;%CP%
+set CP=build\others\samples;%CP%
+
+java -classpath "%CP%" org.biomoby.client.BaseCmdLineClient  %*

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/config/run-testing-central.bat,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Java/src/config/run-testing-central.bat	2005/09/21 05:26:18	1.3
+++ /home/repository/moby/moby-live/Java/src/config/run-testing-central.bat	2005/11/20 12:30:51	1.4
@@ -1,10 +1,10 @@
- at echo off
-
-set "PROJECT_HOME=@PROJECT_HOME@"
-cd "%PROJECT_HOME%"
-set CP=
-for %%i in (lib\*.jar) do call cp.bat %%i
-set CP=build\classes;%CP%
-set CP=build\Clients;%CP%
-
-java -classpath "%CP%" TestingCentral %1 %2 %3 %4 %5 %6 %7 %8 %9
+ at echo off
+
+set "PROJECT_HOME=@PROJECT_HOME@"
+cd "%PROJECT_HOME%"
+set CP=
+for %%i in (lib\*.jar) do call cp.bat %%i
+set CP=build\classes;%CP%
+set CP=build\Clients;%CP%
+
+java -classpath "%CP%" TestingCentral %*




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