[MOBY-guts] biomoby commit

[Dennis Wang]

dwang
Tue Jul 26 01:19:37 EDT 2005
Update of /home/repository/moby/moby-live/Perl/MOBY/Adaptor/moby
In directory pub.open-bio.org:/tmp/cvs-serv23000/Perl/MOBY/Adaptor/moby

Modified Files:
	queryapi.pm 
Log Message:
added some more comments.
some subroutines are still under modification, so holding out for now... don't quite understand what $type is.

moby-live/Perl/MOBY/Adaptor/moby queryapi.pm,1.13,1.14
===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOBY/Adaptor/moby/queryapi.pm,v
retrieving revision 1.13
retrieving revision 1.14
diff -u -r1.13 -r1.14
--- /home/repository/moby/moby-live/Perl/MOBY/Adaptor/moby/queryapi.pm	2005/07/25 23:45:29	1.13
+++ /home/repository/moby/moby-live/Perl/MOBY/Adaptor/moby/queryapi.pm	2005/07/26 05:19:37	1.14
@@ -539,21 +539,36 @@
 	die "delete_namespace not implemented in adaptor\n";
 }
 
-#
+=head2 query_namespace_term2term
+
+ Title     :	query_namespace_term2term
+ Usage     :	my $un = $API->query_namespace_term2term(%args)
+ Function  :	Execute a query for namespaces_term2term
+ Args      :    type => String - namespace_type you are checking for
+ Returns   :    listref of hashrefs:
+ 				[{assertion_id 	  => Integer,
+          		relationship_type => String,
+          		namespace1_id 	  => Integer,
+          		namespace2_id	  => Integer}]	 				
+ 
+=cut
 # namespace_term2term table functions
-#
 sub query_namespace_term2term{
 	die "query_namespace_term2term not implemented in adaptor\n";
 }
 
+# does not exist in mysql api, should this be removed?
 sub insert_namespace_term2term{
 	die "insert_namespace_term2term not implemented in adaptor\n";
 }
 
-sub delete_namespace_term2term{
+# changed to a private subroutine in mysql
+# I guess this subroutine should be removed from here?
+sub _delete_namespace_term2term{
 	die "delete_namespace_term2term not implemented in adaptor\n";
 }
 
+# still incomplete...
 # custom query subroutine for Moby::Central.pm->deregisterObjectClass()
 sub check_object_usage{
 	die "check_object_usage not implemented in adaptor\n";