[MOBY-guts] biomoby commit
Yan Wong
yanwong at pub.open-bio.org
Tue Jan 18 13:37:36 UTC 2005
yanwong
Tue Jan 18 08:46:22 EST 2005
Update of /home/repository/moby/moby-live/Python/bioMoby/ontology
In directory pub.open-bio.org:/tmp/cvs-serv20853/ontology
Modified Files:
AlleleAssociation.py Allele_freq.py AminoAcidSequence.py
B64_Encoded_PNG.py B64_Encoded_Postscript.py
B64_encoded_PDB.py B64_encoded_gif.py B64_encoded_jpeg.py
BLASTText.py BasicGFFSequenceFeature.py
ClustalAlnFormattedText.py ClustalMsfFormattedText.py
CommentedAASequence.py CommentedDNASequence.py
CommentedRNASequence.py DNASequence.py
DNASequenceWithGFFFeatures.py DateTime.py Decypher_Text.py
Edge.py EmblFlatfile.py FASTA.py FASTA_AA.py FASTA_NA.py
FASTA_Text.py GFF.py GFF1.py GFF2.py GFF2_5.py GFF3.py
GO_Term.py GenbankFlatfile.py GenericSequence.py
GeneticElement.py Genotype.py Germplasm_Details.py
Germplasm_List.py Global_Keyword.py HBond_Pair.py
HFormatText.py Haplotyping_Study_obj.py ICIS_Query.py
ICIS_Query2.py ICIS_Query3.py IntAct_XML.py Interaction.py
InteractionMethod.py Interaction_partner.py Interactor.py
MEME_Text.py MGIS_ACCESSION.py MMP_Locus.py MO_Term_Test.py
MmCIFText.py Multi_key_value_pair.py
MyTestingDataType_11024145298313.py MyTree.py
NCBI_BLAST_Text.py NCBI_Blast_XML.py NCBI_Blast_XML_Gif.py
NCBI_Blast_XML_Gif_Map.py NCBI_MEME_Text.py
NucleotideSequence.py PDBFormattedText.py PDBText.py PDGJOB.py
PHDText.py PMUTText.py PSeaTextFormatted.py
PhenotypeDescription.py PubMedMEDLINE.py RNASequence.py
SINGER_ACCESSION.py Sample.py SchematikonMotifID.py
SchematikonMotifSupport.py SchematikonSegmentAttributes.py
SchematikonSegmentID.py SchematikonStructureAnnotation.py
SchematikonVorocodeName.py Scored_acronym_string.py
SimpleAnnotatedGIFImage.py SimpleAnnotatedJPEGImage.py
Simple_key_value_pair.py Snp_allele.py Snp_genotype.py
Study.py TEST.py TargetP_result.py Testout.py TextBase64.py
TextFormatted.py TextHtml.py TextPlain.py TextUuencoded.py
TextXml.py Text_plain.py Trait_Details.py Tree.py
TropGENE_ACCESSION.py TropGENE_Diversity_Matrix.py
TropGENE_LOCUS.py VirtualSequence.py WU_BLAST_Text.py
Wildcard_Query.py __init__.py
Log Message:
moby-live/Python/bioMoby/ontology AlleleAssociation.py,1.1,1.2 Allele_freq.py,1.1,1.2 AminoAcidSequence.py,1.1,1.2 B64_Encoded_PNG.py,1.1,1.2 B64_Encoded_Postscript.py,1.1,1.2 B64_encoded_PDB.py,1.1,1.2 B64_encoded_gif.py,1.1,1.2 B64_encoded_jpeg.py,1.1,1.2 BLASTText.py,1.1,1.2 BasicGFFSequenceFeature.py,1.1,1.2 ClustalAlnFormattedText.py,1.1,1.2 ClustalMsfFormattedText.py,1.1,1.2 CommentedAASequence.py,1.1,1.2 CommentedDNASequence.py,1.1,1.2 CommentedRNASequence.py,1.1,1.2 DNASequence.py,1.1,1.2 DNASequenceWithGFFFeatures.py,1.1,1.2 DateTime.py,1.1,1.2 Decypher_Text.py,1.1,1.2 Edge.py,1.1,1.2 EmblFlatfile.py,1.1,1.2 FASTA.py,1.1,1.2 FASTA_AA.py,1.1,1.2 FASTA_NA.py,1.1,1.2 FASTA_Text.py,1.1,1.2 GFF.py,1.1,1.2 GFF1.py,1.1,1.2 GFF2.py,1.1,1.2 GFF2_5.py,1.1,1.2 GFF3.py,1.1,1.2 GO_Term.py,1.1,1.2 GenbankFlatfile.py,1.1,1.2 GenericSequence.py,1.1,1.2 GeneticElement.py,1.1,1.2 Genotype.py,1.1,1.2 Germplasm_Details.py,1.1,1.2 Germplasm_List.py,1.1,1.2 Global_Keyword.py,1.1,1.2 HBon!
d_Pair.py,1.1,1.2 HFormatText.py,1.1,1.2 Haplotyping_Study_obj.py,1.1,1.2 ICIS_Query.py,1.1,1.2 ICIS_Query2.py,1.1,1.2 ICIS_Query3.py,1.1,1.2 IntAct_XML.py,1.1,1.2 Interaction.py,1.1,1.2 InteractionMethod.py,1.1,1.2 Interaction_partner.py,1.1,1.2 Interactor.py,1.1,1.2 MEME_Text.py,1.1,1.2 MGIS_ACCESSION.py,1.1,1.2 MMP_Locus.py,1.1,1.2 MO_Term_Test.py,1.1,1.2 MmCIFText.py,1.1,1.2 Multi_key_value_pair.py,1.1,1.2 MyTestingDataType_11024145298313.py,1.1,1.2 MyTree.py,1.1,1.2 NCBI_BLAST_Text.py,1.1,1.2 NCBI_Blast_XML.py,1.1,1.2 NCBI_Blast_XML_Gif.py,1.1,1.2 NCBI_Blast_XML_Gif_Map.py,1.1,1.2 NCBI_MEME_Text.py,1.1,1.2 NucleotideSequence.py,1.1,1.2 PDBFormattedText.py,1.1,1.2 PDBText.py,1.1,1.2 PDGJOB.py,1.1,1.2 PHDText.py,1.1,1.2 PMUTText.py,1.1,1.2 PSeaTextFormatted.py,1.1,1.2 PhenotypeDescription.py,1.1,1.2 PubMedMEDLINE.py,1.1,1.2 RNASequence.py,1.1,1.2 SINGER_ACCESSION.py,1.1,1.2 Sample.py,1.1,1.2 SchematikonMotifID.py,1.1,1.2 SchematikonMotifSupport.py,1.1,1.2 SchematikonSegme!
ntAttributes.py,1.1,1.2 SchematikonSegmentID.py,1.1,1.2 Schem!
atikonStructureAnnotation.py,1.1,1.2 SchematikonVorocodeName.py,1.1,1.2 Scored_acronym_string.py,1.1,1.2 SimpleAnnotatedGIFImage.py,1.1,1.2 SimpleAnnotatedJPEGImage.py,1.1,1.2 Simple_key_value_pair.py,1.1,1.2 Snp_allele.py,1.1,1.2 Snp_genotype.py,1.1,1.2 Study.py,1.1,1.2 TEST.py,1.1,1.2 TargetP_result.py,1.1,1.2 Testout.py,1.1,1.2 TextBase64.py,1.1,1.2 TextFormatted.py,1.1,1.2 TextHtml.py,1.1,1.2 TextPlain.py,1.1,1.2 TextUuencoded.py,1.1,1.2 TextXml.py,1.1,1.2 Text_plain.py,1.1,1.2 Trait_Details.py,1.1,1.2 Tree.py,1.1,1.2 TropGENE_ACCESSION.py,1.1,1.2 TropGENE_Diversity_Matrix.py,1.1,1.2 TropGENE_LOCUS.py,1.1,1.2 VirtualSequence.py,1.1,1.2 WU_BLAST_Text.py,1.1,1.2 Wildcard_Query.py,1.1,1.2 __init__.py,1.1,1.2
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/AlleleAssociation.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/AlleleAssociation.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/AlleleAssociation.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyFloat
from bioMoby.mobyDataTypes import MobyObject
@@ -16,16 +20,15 @@
self.Snp=Snp
self.PValue=PValue
self.Validity=Validity
- self._tag="AlleleAssociation"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="AlleleAssociation"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,17 +40,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="snp" or elt.getAttribute("moby:articleName")=="snp"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -59,5 +62,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="validity" or elt.getAttribute("moby:articleName")=="validity"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Validity=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Validity=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Allele_freq.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Allele_freq.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Allele_freq.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyObject
from Snp_allele import MobySnp_allele
from bioMoby.mobyDataTypes import MobyInteger
@@ -14,34 +18,33 @@
self.Snp_lsid=Snp_lsid
self.Allele_freq=Allele_freq
self.Frequency=Frequency
- self._tag="allele_freq"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="allele_freq"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
self.content=""
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
self.Allele_freq=[]
self.Frequency=[]
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Object" or elt.nodeName=="moby:Object") and (elt.getAttribute("articleName")=="panel_lsid" or elt.getAttribute("moby:articleName")=="panel_lsid"):
self.Panel_lsid=MobyObject()
self.Panel_lsid.fromMoby(elt.toxml())
@@ -54,5 +57,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="frequency" or elt.getAttribute("moby:articleName")=="frequency"):
t=MobyInteger()
t.fromMoby(elt.toxml())
- self.Frequency.append(t.content)
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Frequency.append(t.content)
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/AminoAcidSequence.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/AminoAcidSequence.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/AminoAcidSequence.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from GenericSequence import MobyGenericSequence
@@ -15,16 +19,15 @@
self.id=id
self.Length=Length
self.SequenceString=SequenceString
- self._tag="AminoAcidSequence"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="AminoAcidSequence"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -36,17 +39,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="Length" or elt.getAttribute("moby:articleName")=="Length"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -54,5 +57,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="SequenceString" or elt.getAttribute("moby:articleName")=="SequenceString"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.SequenceString=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.SequenceString=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_Encoded_PNG.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_Encoded_PNG.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_Encoded_PNG.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextBase64 import MobyTextBase64
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="b64_Encoded_PNG"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="b64_Encoded_PNG"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_Encoded_Postscript.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_Encoded_Postscript.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_Encoded_Postscript.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextBase64 import MobyTextBase64
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="b64_Encoded_Postscript"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="b64_Encoded_Postscript"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_encoded_PDB.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_encoded_PDB.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_encoded_PDB.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextBase64 import MobyTextBase64
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="b64_encoded_PDB"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="b64_encoded_PDB"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_encoded_gif.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_encoded_gif.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_encoded_gif.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextBase64 import MobyTextBase64
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="b64_encoded_gif"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="b64_encoded_gif"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_encoded_jpeg.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_encoded_jpeg.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/B64_encoded_jpeg.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextBase64 import MobyTextBase64
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="b64_encoded_jpeg"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="b64_encoded_jpeg"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/BLASTText.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/BLASTText.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/BLASTText.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="BLAST-Text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="BLAST-Text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/BasicGFFSequenceFeature.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/BasicGFFSequenceFeature.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/BasicGFFSequenceFeature.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyFloat
@@ -25,16 +29,15 @@
self.Frame=Frame
self.Phase=Phase
self.Column9_tag_value=Column9_tag_value
- self._tag="BasicGFFSequenceFeature"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="BasicGFFSequenceFeature"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -46,18 +49,18 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
self.Column9_tag_value=[]
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="reference" or elt.getAttribute("moby:articleName")=="reference"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -96,5 +99,4 @@
self.Phase=t.content
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="multi_key_value_pair" or elt.nodeName=="moby:multi_key_value_pair") and (elt.getAttribute("articleName")=="column9_tag_value" or elt.getAttribute("moby:articleName")=="column9_tag_value"):
self.Column9_tag_value=MobyMulti_key_value_pair()
- self.Column9_tag_value.fromMoby(elt.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Column9_tag_value.fromMoby(elt.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/ClustalAlnFormattedText.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/ClustalAlnFormattedText.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/ClustalAlnFormattedText.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="clustal-aln-formatted-text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="clustal-aln-formatted-text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/ClustalMsfFormattedText.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/ClustalMsfFormattedText.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/ClustalMsfFormattedText.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="clustal-msf-formatted-text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="clustal-msf-formatted-text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/CommentedAASequence.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/CommentedAASequence.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/CommentedAASequence.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from AminoAcidSequence import MobyAminoAcidSequence
@@ -16,16 +20,15 @@
self.Length=Length
self.SequenceString=SequenceString
self.Description=Description
- self._tag="CommentedAASequence"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="CommentedAASequence"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,17 +40,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="Length" or elt.getAttribute("moby:articleName")=="Length"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -59,5 +62,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="Description" or elt.getAttribute("moby:articleName")=="Description"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Description=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Description=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/CommentedDNASequence.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/CommentedDNASequence.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/CommentedDNASequence.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from DNASequence import MobyDNASequence
@@ -16,16 +20,15 @@
self.Length=Length
self.SequenceString=SequenceString
self.Description=Description
- self._tag="CommentedDNASequence"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="CommentedDNASequence"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,17 +40,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="Length" or elt.getAttribute("moby:articleName")=="Length"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -59,5 +62,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="Description" or elt.getAttribute("moby:articleName")=="Description"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Description=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Description=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/CommentedRNASequence.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/CommentedRNASequence.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/CommentedRNASequence.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from RNASequence import MobyRNASequence
@@ -16,16 +20,15 @@
self.Length=Length
self.SequenceString=SequenceString
self.Description=Description
- self._tag="CommentedRNASequence"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="CommentedRNASequence"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,17 +40,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="Length" or elt.getAttribute("moby:articleName")=="Length"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -59,5 +62,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="Description" or elt.getAttribute("moby:articleName")=="Description"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Description=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Description=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/DNASequence.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/DNASequence.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/DNASequence.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from NucleotideSequence import MobyNucleotideSequence
@@ -15,16 +19,15 @@
self.id=id
self.Length=Length
self.SequenceString=SequenceString
- self._tag="DNASequence"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="DNASequence"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -36,17 +39,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="Length" or elt.getAttribute("moby:articleName")=="Length"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -54,5 +57,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="SequenceString" or elt.getAttribute("moby:articleName")=="SequenceString"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.SequenceString=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.SequenceString=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/DNASequenceWithGFFFeatures.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/DNASequenceWithGFFFeatures.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/DNASequenceWithGFFFeatures.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from BasicGFFSequenceFeature import MobyBasicGFFSequenceFeature
@@ -17,16 +21,15 @@
self.Length=Length
self.SequenceString=SequenceString
self.DNASequenceWithGFFFeatures=DNASequenceWithGFFFeatures
- self._tag="DNASequenceWithGFFFeatures"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="DNASequenceWithGFFFeatures"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -38,18 +41,18 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
self.DNASequenceWithGFFFeatures=[]
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="Length" or elt.getAttribute("moby:articleName")=="Length"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -60,5 +63,4 @@
self.SequenceString=t.content
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="BasicGFFSequenceFeature" or elt.nodeName=="moby:BasicGFFSequenceFeature") and (elt.getAttribute("articleName")=="DNASequenceWithGFFFeatures" or elt.getAttribute("moby:articleName")=="DNASequenceWithGFFFeatures"):
self.DNASequenceWithGFFFeatures=MobyBasicGFFSequenceFeature()
- self.DNASequenceWithGFFFeatures.fromMoby(elt.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.DNASequenceWithGFFFeatures.fromMoby(elt.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/DateTime.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/DateTime.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/DateTime.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="DateTime"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="DateTime"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Decypher_Text.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Decypher_Text.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Decypher_Text.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="Decypher_Text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Decypher_Text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Edge.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Edge.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Edge.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyObject
@@ -15,16 +19,15 @@
self.id=id
self.Partner=Partner
self.Direction=Direction
- self._tag="Edge"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Edge"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -36,17 +39,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="partner" or elt.getAttribute("moby:articleName")=="partner"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -54,5 +57,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="direction" or elt.getAttribute("moby:articleName")=="direction"):
t=MobyInteger()
t.fromMoby(elt.toxml())
- self.Direction=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Direction=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/EmblFlatfile.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/EmblFlatfile.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/EmblFlatfile.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="embl-flatfile"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="embl-flatfile"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/FASTA.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/FASTA.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/FASTA.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="FASTA"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="FASTA"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/FASTA_AA.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/FASTA_AA.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/FASTA_AA.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from FASTA import MobyFASTA
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="FASTA_AA"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="FASTA_AA"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/FASTA_NA.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/FASTA_NA.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/FASTA_NA.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from FASTA import MobyFASTA
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="FASTA_NA"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="FASTA_NA"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/FASTA_Text.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/FASTA_Text.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/FASTA_Text.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="FASTA_Text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="FASTA_Text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="GFF"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="GFF"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF1.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF1.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF1.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from GFF import MobyGFF
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="GFF1"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="GFF1"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF2.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF2.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF2.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from GFF import MobyGFF
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="GFF2"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="GFF2"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF2_5.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF2_5.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF2_5.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from GFF import MobyGFF
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="GFF2_5"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="GFF2_5"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF3.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF3.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/GFF3.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from GFF import MobyGFF
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="GFF3"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="GFF3"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/GO_Term.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/GO_Term.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/GO_Term.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -14,16 +18,15 @@
self.id=id
self.Term=Term
self.Definition=Definition
- self._tag="GO_Term"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="GO_Term"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -35,17 +38,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="Term" or elt.getAttribute("moby:articleName")=="Term"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -53,5 +56,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="Definition" or elt.getAttribute("moby:articleName")=="Definition"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Definition=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Definition=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/GenbankFlatfile.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/GenbankFlatfile.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/GenbankFlatfile.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="genbank-flatfile"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="genbank-flatfile"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/GenericSequence.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/GenericSequence.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/GenericSequence.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from VirtualSequence import MobyVirtualSequence
@@ -15,16 +19,15 @@
self.id=id
self.Length=Length
self.SequenceString=SequenceString
- self._tag="GenericSequence"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="GenericSequence"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -36,17 +39,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="Length" or elt.getAttribute("moby:articleName")=="Length"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -54,5 +57,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="SequenceString" or elt.getAttribute("moby:articleName")=="SequenceString"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.SequenceString=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.SequenceString=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/GeneticElement.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/GeneticElement.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/GeneticElement.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -13,16 +17,15 @@
self.namespace=namespace
self.id=id
self.GeneticElement=GeneticElement
- self._tag="GeneticElement"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="GeneticElement"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -34,19 +37,18 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="GeneticElement" or elt.getAttribute("moby:articleName")=="GeneticElement"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.GeneticElement=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.GeneticElement=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Genotype.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Genotype.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Genotype.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -15,16 +19,15 @@
self.Snp=Snp
self.Sample=Sample
self.Result=Result
- self._tag="Genotype"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Genotype"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -36,17 +39,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="snp" or elt.getAttribute("moby:articleName")=="snp"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -58,5 +61,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="result" or elt.getAttribute("moby:articleName")=="result"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Result=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Result=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Germplasm_Details.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Germplasm_Details.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Germplasm_Details.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -21,16 +25,15 @@
self.Method=Method
self.Location=Location
self.Germplasm_id=Germplasm_id
- self._tag="Germplasm_Details"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Germplasm_Details"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -42,17 +45,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="date" or elt.getAttribute("moby:articleName")=="date"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -84,5 +87,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="germplasm_id" or elt.getAttribute("moby:articleName")=="germplasm_id"):
t=MobyInteger()
t.fromMoby(elt.toxml())
- self.Germplasm_id=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Germplasm_id=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Germplasm_List.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Germplasm_List.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Germplasm_List.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -21,16 +25,15 @@
self.Scale_desc=Scale_desc
self.Method=Method
self.Study_id=Study_id
- self._tag="Germplasm_List"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Germplasm_List"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -42,17 +45,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="germplasm_id" or elt.getAttribute("moby:articleName")=="germplasm_id"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -84,5 +87,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="study_id" or elt.getAttribute("moby:articleName")=="study_id"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Study_id=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Study_id=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Global_Keyword.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Global_Keyword.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Global_Keyword.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyObject
@@ -11,16 +15,15 @@
self._articles={}
self.namespace=namespace
self.id=id
- self._tag="Global_Keyword"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Global_Keyword"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -32,15 +35,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/HBond_Pair.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/HBond_Pair.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/HBond_Pair.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -15,16 +19,15 @@
self.A=A
self.H=H
self.D=D
- self._tag="HBond_Pair"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="HBond_Pair"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -36,17 +39,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="A" or elt.getAttribute("moby:articleName")=="A"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -58,5 +61,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="D" or elt.getAttribute("moby:articleName")=="D"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.D=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.D=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/HFormatText.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/HFormatText.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/HFormatText.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="HFormat-text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="HFormat-text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Haplotyping_Study_obj.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Haplotyping_Study_obj.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Haplotyping_Study_obj.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyObject
@@ -11,16 +15,15 @@
self._articles={}
self.namespace=namespace
self.id=id
- self._tag="Haplotyping_Study_obj"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Haplotyping_Study_obj"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -32,15 +35,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/ICIS_Query.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/ICIS_Query.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/ICIS_Query.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -16,16 +20,15 @@
self.End_row=End_row
self.Start_row=Start_row
self.Search_text=Search_text
- self._tag="ICIS_Query"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="ICIS_Query"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,17 +40,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="end_row" or elt.getAttribute("moby:articleName")=="end_row"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -59,5 +62,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="search_text" or elt.getAttribute("moby:articleName")=="search_text"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Search_text=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Search_text=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/ICIS_Query2.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/ICIS_Query2.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/ICIS_Query2.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyObject
@@ -18,16 +22,15 @@
self.Search_text3=Search_text3
self.Start_row=Start_row
self.End_row=End_row
- self._tag="ICIS_Query2"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="ICIS_Query2"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -39,17 +42,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="search_text1" or elt.getAttribute("moby:articleName")=="search_text1"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -69,5 +72,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="end_row" or elt.getAttribute("moby:articleName")=="end_row"):
t=MobyInteger()
t.fromMoby(elt.toxml())
- self.End_row=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.End_row=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/ICIS_Query3.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/ICIS_Query3.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/ICIS_Query3.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyObject
@@ -16,16 +20,15 @@
self.Search_text2=Search_text2
self.Start_row=Start_row
self.End_row=End_row
- self._tag="ICIS_Query3"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="ICIS_Query3"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,17 +40,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="search_text1" or elt.getAttribute("moby:articleName")=="search_text1"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -63,5 +66,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="end_row" or elt.getAttribute("moby:articleName")=="end_row"):
t=MobyInteger()
t.fromMoby(elt.toxml())
- self.End_row=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.End_row=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/IntAct_XML.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/IntAct_XML.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/IntAct_XML.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextXml import MobyTextXml
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="IntAct_XML"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="IntAct_XML"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Interaction.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Interaction.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Interaction.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from Interactor import MobyInteractor
from bioMoby.mobyDataTypes import MobyObject
@@ -16,16 +20,15 @@
self.Result=Result
self.ResultUnits=ResultUnits
self.Participant=Participant
- self._tag="Interaction"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Interaction"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,18 +40,18 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
self.Participant=[]
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="result" or elt.getAttribute("moby:articleName")=="result"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -59,5 +62,4 @@
self.ResultUnits=t.content
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Interactor" or elt.nodeName=="moby:Interactor") and (elt.getAttribute("articleName")=="participant" or elt.getAttribute("moby:articleName")=="participant"):
self.Participant=MobyInteractor()
- self.Participant.fromMoby(elt.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Participant.fromMoby(elt.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/InteractionMethod.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/InteractionMethod.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/InteractionMethod.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -15,16 +19,15 @@
self.Shortlabel=Shortlabel
self.Term=Term
self.Definition=Definition
- self._tag="InteractionMethod"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="InteractionMethod"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -36,17 +39,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="shortlabel" or elt.getAttribute("moby:articleName")=="shortlabel"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -58,5 +61,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="definition" or elt.getAttribute("moby:articleName")=="definition"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Definition=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Definition=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Interaction_partner.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Interaction_partner.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Interaction_partner.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -15,16 +19,15 @@
self.id=id
self.Direction=Direction
self.Partner=Partner
- self._tag="interaction_partner"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="interaction_partner"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -36,17 +39,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="direction" or elt.getAttribute("moby:articleName")=="direction"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -54,5 +57,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="partner" or elt.getAttribute("moby:articleName")=="partner"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Partner=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Partner=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Interactor.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Interactor.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Interactor.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -13,16 +17,15 @@
self.namespace=namespace
self.id=id
self.Role=Role
- self._tag="Interactor"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Interactor"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -34,19 +37,18 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="role" or elt.getAttribute("moby:articleName")=="role"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Role=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Role=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/MEME_Text.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/MEME_Text.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/MEME_Text.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="MEME_Text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="MEME_Text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/MGIS_ACCESSION.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/MGIS_ACCESSION.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/MGIS_ACCESSION.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -32,16 +36,15 @@
self.Abiotic_stress_Soilacidity=Abiotic_stress_Soilacidity
self.Abiotic_stress_Manganesetox=Abiotic_stress_Manganesetox
self.Abiotic_stress_Hightemp=Abiotic_stress_Hightemp
- self._tag="MGIS_ACCESSION"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="MGIS_ACCESSION"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -53,17 +56,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="Biotic_stress_Yellowsig" or elt.getAttribute("moby:articleName")=="Biotic_stress_Yellowsig"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -143,5 +146,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="Abiotic_stress_Hightemp" or elt.getAttribute("moby:articleName")=="Abiotic_stress_Hightemp"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Abiotic_stress_Hightemp=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Abiotic_stress_Hightemp=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/MMP_Locus.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/MMP_Locus.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/MMP_Locus.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyObject
@@ -11,16 +15,15 @@
self._articles={}
self.namespace=namespace
self.id=id
- self._tag="MMP_Locus"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="MMP_Locus"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -32,15 +35,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/MO_Term_Test.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/MO_Term_Test.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/MO_Term_Test.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -16,16 +20,15 @@
self.Individual_name=Individual_name
self.Individual_desc=Individual_desc
self.Class_desc=Class_desc
- self._tag="MO_Term_Test"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="MO_Term_Test"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,17 +40,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="class_name" or elt.getAttribute("moby:articleName")=="class_name"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -63,5 +66,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="class_desc" or elt.getAttribute("moby:articleName")=="class_desc"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Class_desc=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Class_desc=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/MmCIFText.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/MmCIFText.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/MmCIFText.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="mmCIF-Text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="mmCIF-Text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Multi_key_value_pair.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Multi_key_value_pair.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Multi_key_value_pair.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -14,16 +18,15 @@
self.id=id
self.Key=Key
self.Value=Value
- self._tag="multi_key_value_pair"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="multi_key_value_pair"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -35,18 +38,18 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
self.Value=[]
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="key" or elt.getAttribute("moby:articleName")=="key"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -54,5 +57,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="value" or elt.getAttribute("moby:articleName")=="value"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Value.append(t.content)
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Value.append(t.content)
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/MyTestingDataType_11024145298313.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/MyTestingDataType_11024145298313.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/MyTestingDataType_11024145298313.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="MyTestingDataType_11024145298313"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="MyTestingDataType_11024145298313"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/MyTree.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/MyTree.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/MyTree.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="myTree"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="myTree"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_BLAST_Text.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_BLAST_Text.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_BLAST_Text.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="NCBI_BLAST_Text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="NCBI_BLAST_Text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_Blast_XML.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_Blast_XML.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_Blast_XML.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextXml import MobyTextXml
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="NCBI_Blast_XML"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="NCBI_Blast_XML"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_Blast_XML_Gif.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_Blast_XML_Gif.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_Blast_XML_Gif.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from B64_encoded_gif import MobyB64_encoded_gif
from NCBI_Blast_XML import MobyNCBI_Blast_XML
@@ -14,16 +18,15 @@
self.namespace=namespace
self.id=id
self.HitGraph=HitGraph
- self._tag="NCBI_Blast_XML_Gif"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="NCBI_Blast_XML_Gif"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -35,18 +38,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="b64_encoded_gif" or elt.nodeName=="moby:b64_encoded_gif") and (elt.getAttribute("articleName")=="hitGraph" or elt.getAttribute("moby:articleName")=="hitGraph"):
self.HitGraph=MobyB64_encoded_gif()
- self.HitGraph.fromMoby(elt.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.HitGraph.fromMoby(elt.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_Blast_XML_Gif_Map.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_Blast_XML_Gif_Map.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_Blast_XML_Gif_Map.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from B64_encoded_gif import MobyB64_encoded_gif
from TextHtml import MobyTextHtml
from NCBI_Blast_XML_Gif import MobyNCBI_Blast_XML_Gif
@@ -16,16 +20,15 @@
self.id=id
self.HitGraph=HitGraph
self.AreaMap=AreaMap
- self._tag="NCBI_Blast_XML_Gif_Map"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="NCBI_Blast_XML_Gif_Map"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,21 +40,20 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="b64_encoded_gif" or elt.nodeName=="moby:b64_encoded_gif") and (elt.getAttribute("articleName")=="hitGraph" or elt.getAttribute("moby:articleName")=="hitGraph"):
self.HitGraph=MobyB64_encoded_gif()
self.HitGraph.fromMoby(elt.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="text-html" or elt.nodeName=="moby:text-html") and (elt.getAttribute("articleName")=="areaMap" or elt.getAttribute("moby:articleName")=="areaMap"):
self.AreaMap=MobyTextHtml()
- self.AreaMap.fromMoby(elt.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.AreaMap.fromMoby(elt.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_MEME_Text.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_MEME_Text.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/NCBI_MEME_Text.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="NCBI_MEME_Text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="NCBI_MEME_Text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/NucleotideSequence.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/NucleotideSequence.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/NucleotideSequence.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from GenericSequence import MobyGenericSequence
@@ -15,16 +19,15 @@
self.id=id
self.Length=Length
self.SequenceString=SequenceString
- self._tag="NucleotideSequence"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="NucleotideSequence"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -36,17 +39,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="Length" or elt.getAttribute("moby:articleName")=="Length"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -54,5 +57,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="SequenceString" or elt.getAttribute("moby:articleName")=="SequenceString"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.SequenceString=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.SequenceString=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/PDBFormattedText.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/PDBFormattedText.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/PDBFormattedText.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="PDB-formatted-text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="PDB-formatted-text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/PDBText.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/PDBText.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/PDBText.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="PDB-Text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="PDB-Text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/PDGJOB.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/PDGJOB.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/PDGJOB.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from DateTime import MobyDateTime
from bioMoby.mobyDataTypes import MobyObject
@@ -18,16 +22,15 @@
self.Timeout=Timeout
self.Killcode=Killcode
self.KillService=KillService
- self._tag="PDGJOB"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="PDGJOB"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -39,17 +42,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="answerService" or elt.getAttribute("moby:articleName")=="answerService"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -68,5 +71,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="killService" or elt.getAttribute("moby:articleName")=="killService"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.KillService=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.KillService=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/PHDText.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/PHDText.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/PHDText.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="PHD-Text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="PHD-Text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/PMUTText.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/PMUTText.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/PMUTText.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="PMUT-Text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="PMUT-Text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/PSeaTextFormatted.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/PSeaTextFormatted.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/PSeaTextFormatted.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="PSea-text-formatted"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="PSea-text-formatted"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/PhenotypeDescription.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/PhenotypeDescription.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/PhenotypeDescription.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -13,16 +17,15 @@
self.namespace=namespace
self.id=id
self.Phenotype=Phenotype
- self._tag="PhenotypeDescription"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="PhenotypeDescription"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -34,19 +37,18 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="Phenotype" or elt.getAttribute("moby:articleName")=="Phenotype"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Phenotype=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Phenotype=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/PubMedMEDLINE.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/PubMedMEDLINE.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/PubMedMEDLINE.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="PubMed-MEDLINE"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="PubMed-MEDLINE"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/RNASequence.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/RNASequence.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/RNASequence.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from NucleotideSequence import MobyNucleotideSequence
@@ -15,16 +19,15 @@
self.id=id
self.Length=Length
self.SequenceString=SequenceString
- self._tag="RNASequence"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="RNASequence"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -36,17 +39,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="Length" or elt.getAttribute("moby:articleName")=="Length"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -54,5 +57,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="SequenceString" or elt.getAttribute("moby:articleName")=="SequenceString"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.SequenceString=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.SequenceString=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/SINGER_ACCESSION.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/SINGER_ACCESSION.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/SINGER_ACCESSION.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -16,16 +20,15 @@
self.ORIGCTY=ORIGCTY
self.GENUS=GENUS
self.SPECIES=SPECIES
- self._tag="SINGER_ACCESSION"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="SINGER_ACCESSION"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,17 +40,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="ACCNO" or elt.getAttribute("moby:articleName")=="ACCNO"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -63,5 +66,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="SPECIES" or elt.getAttribute("moby:articleName")=="SPECIES"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.SPECIES=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.SPECIES=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Sample.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Sample.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Sample.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyObject
@@ -15,16 +19,15 @@
self.id=id
self.Code=Code
self.Affectation=Affectation
- self._tag="Sample"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Sample"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -36,17 +39,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="code" or elt.getAttribute("moby:articleName")=="code"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -54,5 +57,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="affectation" or elt.getAttribute("moby:articleName")=="affectation"):
t=MobyInteger()
t.fromMoby(elt.toxml())
- self.Affectation=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Affectation=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonMotifID.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonMotifID.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonMotifID.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from SchematikonSegmentID import MobySchematikonSegmentID
@@ -13,16 +17,15 @@
self.namespace=namespace
self.id=id
self.ID=ID
- self._tag="SchematikonMotifID"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="SchematikonMotifID"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -34,19 +37,18 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="ID" or elt.getAttribute("moby:articleName")=="ID"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.ID=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.ID=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonMotifSupport.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonMotifSupport.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonMotifSupport.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyObject
@@ -14,16 +18,15 @@
self.id=id
self.UniqueSupport=UniqueSupport
self.Support=Support
- self._tag="SchematikonMotifSupport"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="SchematikonMotifSupport"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -35,17 +38,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="UniqueSupport" or elt.getAttribute("moby:articleName")=="UniqueSupport"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -53,5 +56,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="Support" or elt.getAttribute("moby:articleName")=="Support"):
t=MobyInteger()
t.fromMoby(elt.toxml())
- self.Support=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Support=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonSegmentAttributes.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonSegmentAttributes.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonSegmentAttributes.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -18,16 +22,15 @@
self.StartingAminoAcidPosition=StartingAminoAcidPosition
self.ChainID=ChainID
self.PDBID=PDBID
- self._tag="SchematikonSegmentAttributes"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="SchematikonSegmentAttributes"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -39,17 +42,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="Length" or elt.getAttribute("moby:articleName")=="Length"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -69,5 +72,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="PDB ID" or elt.getAttribute("moby:articleName")=="PDB ID"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.PDBID=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.PDBID=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonSegmentID.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonSegmentID.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonSegmentID.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -13,16 +17,15 @@
self.namespace=namespace
self.id=id
self.ID=ID
- self._tag="SchematikonSegmentID"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="SchematikonSegmentID"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -34,19 +37,18 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="ID" or elt.getAttribute("moby:articleName")=="ID"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.ID=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.ID=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonStructureAnnotation.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonStructureAnnotation.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonStructureAnnotation.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -16,16 +20,15 @@
self.PROMOTIFBetaTurn=PROMOTIFBetaTurn
self.DSSP=DSSP
self.STRIDE=STRIDE
- self._tag="SchematikonStructureAnnotation"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="SchematikonStructureAnnotation"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,17 +40,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="PROMOTIF gamma-turn" or elt.getAttribute("moby:articleName")=="PROMOTIF gamma-turn"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -63,5 +66,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="STRIDE" or elt.getAttribute("moby:articleName")=="STRIDE"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.STRIDE=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.STRIDE=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonVorocodeName.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonVorocodeName.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/SchematikonVorocodeName.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -13,16 +17,15 @@
self.namespace=namespace
self.id=id
self.VorocodeName=VorocodeName
- self._tag="SchematikonVorocodeName"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="SchematikonVorocodeName"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -34,19 +37,18 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="VorocodeName" or elt.getAttribute("moby:articleName")=="VorocodeName"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.VorocodeName=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.VorocodeName=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Scored_acronym_string.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Scored_acronym_string.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Scored_acronym_string.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyFloat
from bioMoby.mobyDataTypes import MobyObject
from bioMoby.mobyDataTypes import MobyString
@@ -16,16 +20,15 @@
self.Score=Score
self.String_component=String_component
self.Acronym=Acronym
- self._tag="Scored_acronym_string"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Scored_acronym_string"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,17 +40,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Float" or elt.nodeName=="moby:Float") and (elt.getAttribute("articleName")=="score" or elt.getAttribute("moby:articleName")=="score"):
t=MobyFloat()
t.fromMoby(elt.toxml())
@@ -58,5 +61,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="acronym" or elt.getAttribute("moby:articleName")=="acronym"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Acronym=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Acronym=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/SimpleAnnotatedGIFImage.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/SimpleAnnotatedGIFImage.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/SimpleAnnotatedGIFImage.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from B64_encoded_gif import MobyB64_encoded_gif
@@ -14,16 +18,15 @@
self.namespace=namespace
self.id=id
self.Description=Description
- self._tag="SimpleAnnotatedGIFImage"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="SimpleAnnotatedGIFImage"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -35,19 +38,18 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="Description" or elt.getAttribute("moby:articleName")=="Description"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Description=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Description=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/SimpleAnnotatedJPEGImage.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/SimpleAnnotatedJPEGImage.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/SimpleAnnotatedJPEGImage.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from B64_encoded_jpeg import MobyB64_encoded_jpeg
@@ -14,16 +18,15 @@
self.namespace=namespace
self.id=id
self.Description=Description
- self._tag="SimpleAnnotatedJPEGImage"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="SimpleAnnotatedJPEGImage"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -35,20 +38,19 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
self.Description=[]
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="Description" or elt.getAttribute("moby:articleName")=="Description"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Description.append(t.content)
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Description.append(t.content)
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Simple_key_value_pair.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Simple_key_value_pair.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Simple_key_value_pair.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -14,16 +18,15 @@
self.id=id
self.Value=Value
self.Key=Key
- self._tag="simple_key_value_pair"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="simple_key_value_pair"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -35,17 +38,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="value" or elt.getAttribute("moby:articleName")=="value"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -53,5 +56,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="key" or elt.getAttribute("moby:articleName")=="key"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Key=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Key=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Snp_allele.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Snp_allele.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Snp_allele.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from DNASequence import MobyDNASequence
class MobySnp_allele:
@@ -9,33 +13,31 @@
def __init__(self,Snp_allele=None,articleName=""):
self._articles={"Snp_allele":"snp_allele"}
self.Snp_allele=Snp_allele
- self._tag="snp_allele"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="snp_allele"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
self.content=""
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="DNASequence" or elt.nodeName=="moby:DNASequence") and (elt.getAttribute("articleName")=="snp_allele" or elt.getAttribute("moby:articleName")=="snp_allele"):
self.Snp_allele=MobyDNASequence()
- self.Snp_allele.fromMoby(elt.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Snp_allele.fromMoby(elt.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Snp_genotype.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Snp_genotype.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Snp_genotype.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from Snp_allele import MobySnp_allele
class MobySnp_genotype:
@@ -10,36 +14,34 @@
self._articles={"Allele1":"allele1","Allele2":"allele2"}
self.Allele1=Allele1
self.Allele2=Allele2
- self._tag="snp_genotype"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="snp_genotype"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
self.content=""
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="snp_allele" or elt.nodeName=="moby:snp_allele") and (elt.getAttribute("articleName")=="allele1" or elt.getAttribute("moby:articleName")=="allele1"):
self.Allele1=MobySnp_allele()
self.Allele1.fromMoby(elt.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="snp_allele" or elt.nodeName=="moby:snp_allele") and (elt.getAttribute("articleName")=="allele2" or elt.getAttribute("moby:articleName")=="allele2"):
self.Allele2=MobySnp_allele()
- self.Allele2.fromMoby(elt.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Allele2.fromMoby(elt.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Study.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Study.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Study.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyObject
@@ -16,16 +20,15 @@
self.Study_name=Study_name
self.Study_id=Study_id
self.Study_desc=Study_desc
- self._tag="Study"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Study"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,17 +40,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="study_name" or elt.getAttribute("moby:articleName")=="study_name"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -59,5 +62,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="study_desc" or elt.getAttribute("moby:articleName")=="study_desc"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Study_desc=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Study_desc=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/TEST.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/TEST.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/TEST.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="TEST"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="TEST"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/TargetP_result.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/TargetP_result.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/TargetP_result.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyFloat
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -18,16 +22,15 @@
self.M_score=M_score
self.C_score=C_score
self.Compartment=Compartment
- self._tag="TargetP_result"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="TargetP_result"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -39,17 +42,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Float" or elt.nodeName=="moby:Float") and (elt.getAttribute("articleName")=="o_score" or elt.getAttribute("moby:articleName")=="o_score"):
t=MobyFloat()
t.fromMoby(elt.toxml())
@@ -69,5 +72,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="compartment" or elt.getAttribute("moby:articleName")=="compartment"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Compartment=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Compartment=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Testout.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Testout.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Testout.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -17,16 +21,15 @@
self.Dvalue=Dvalue
self.Scaleid=Scaleid
self.Tmethid=Tmethid
- self._tag="testout"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="testout"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -38,17 +41,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="gid" or elt.getAttribute("moby:articleName")=="gid"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -64,5 +67,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="tmethid" or elt.getAttribute("moby:articleName")=="tmethid"):
t=MobyInteger()
t.fromMoby(elt.toxml())
- self.Tmethid=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Tmethid=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/TextBase64.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/TextBase64.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/TextBase64.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="text-base64"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="text-base64"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/TextFormatted.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/TextFormatted.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/TextFormatted.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextPlain import MobyTextPlain
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="text-formatted"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="text-formatted"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/TextHtml.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/TextHtml.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/TextHtml.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="text-html"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="text-html"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/TextPlain.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/TextPlain.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/TextPlain.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="text-plain"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="text-plain"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/TextUuencoded.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/TextUuencoded.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/TextUuencoded.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="text-uuencoded"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="text-uuencoded"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/TextXml.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/TextXml.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/TextXml.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="text-xml"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="text-xml"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Text_plain.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Text_plain.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Text_plain.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="text_plain"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="text_plain"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Trait_Details.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Trait_Details.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Trait_Details.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyObject
@@ -18,16 +22,15 @@
self.Trait_abbr=Trait_abbr
self.Trait_id=Trait_id
self.Trait_name=Trait_name
- self._tag="Trait_Details"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Trait_Details"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -39,17 +42,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="trait_desc" or elt.getAttribute("moby:articleName")=="trait_desc"):
t=MobyString()
t.fromMoby(elt.toxml())
@@ -69,5 +72,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="trait_name" or elt.getAttribute("moby:articleName")=="trait_name"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Trait_name=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Trait_name=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Tree.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Tree.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Tree.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="Tree"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Tree"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/TropGENE_ACCESSION.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/TropGENE_ACCESSION.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/TropGENE_ACCESSION.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TropGENE_LOCUS import MobyTropGENE_LOCUS
from bioMoby.mobyDataTypes import MobyObject
@@ -22,16 +26,15 @@
self.SNP=SNP
self.CAPS=CAPS
self.TAMPL=TAMPL
- self._tag="TropGENE_ACCESSION"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="TropGENE_ACCESSION"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -43,10 +46,10 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
self.RFLP=[]
self.AFLP=[]
self.RAPD=[]
@@ -61,9 +64,9 @@
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="TropGENE_LOCUS" or elt.nodeName=="moby:TropGENE_LOCUS") and (elt.getAttribute("articleName")=="RFLP" or elt.getAttribute("moby:articleName")=="RFLP"):
self.RFLP=MobyTropGENE_LOCUS()
self.RFLP.fromMoby(elt.toxml())
@@ -93,5 +96,4 @@
self.CAPS.fromMoby(elt.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="TropGENE_LOCUS" or elt.nodeName=="moby:TropGENE_LOCUS") and (elt.getAttribute("articleName")=="TAMPL" or elt.getAttribute("moby:articleName")=="TAMPL"):
self.TAMPL=MobyTropGENE_LOCUS()
- self.TAMPL.fromMoby(elt.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.TAMPL.fromMoby(elt.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/TropGENE_Diversity_Matrix.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/TropGENE_Diversity_Matrix.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/TropGENE_Diversity_Matrix.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="TropGENE_Diversity_Matrix"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="TropGENE_Diversity_Matrix"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/TropGENE_LOCUS.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/TropGENE_LOCUS.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/TropGENE_LOCUS.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyObject
@@ -11,16 +15,15 @@
self._articles={}
self.namespace=namespace
self.id=id
- self._tag="TropGENE_LOCUS"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="TropGENE_LOCUS"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -32,15 +35,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/VirtualSequence.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/VirtualSequence.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/VirtualSequence.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyObject
@@ -13,16 +17,15 @@
self.namespace=namespace
self.id=id
self.Length=Length
- self._tag="VirtualSequence"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="VirtualSequence"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -34,19 +37,18 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="Length" or elt.getAttribute("moby:articleName")=="Length"):
t=MobyInteger()
t.fromMoby(elt.toxml())
- self.Length=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Length=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/WU_BLAST_Text.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/WU_BLAST_Text.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/WU_BLAST_Text.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from TextFormatted import MobyTextFormatted
@@ -12,16 +16,15 @@
self.content=content
self.namespace=namespace
self.id=id
- self._tag="WU_BLAST_Text"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="WU_BLAST_Text"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -33,15 +36,14 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
- del parseString, Node, NodeList
\ No newline at end of file
+ self.__cross__.append(ref.toxml())
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/Wildcard_Query.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/Wildcard_Query.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/Wildcard_Query.py 2005/01/18 13:46:22 1.2
@@ -1,4 +1,8 @@
#Autogenerated class
+
+
+from xml.dom.minidom import parseString
+
from bioMoby.mobyDataTypes import MobyInteger
from bioMoby.mobyDataTypes import MobyString
from bioMoby.mobyDataTypes import MobyObject
@@ -16,16 +20,15 @@
self.End_row=End_row
self.Start_row=Start_row
self.Germplasm_name=Germplasm_name
- self._tag="Wildcard_Query"
- self._articleName=articleName
- self._cross=None
+ self.__prefix__="moby"
+ self.__tag__="Wildcard_Query"
+ self.articleName=articleName
def fromMoby(self, value):
""" Load the attributes from an XML string
"""
- from xml.dom.minidom import parseString, Node, NodeList
from bioMoby.mobyMarshal import MobyUnmarshaller
doc=parseString(value).firstChild
um=MobyUnmarshaller()
@@ -37,17 +40,17 @@
if self.id=="":
self.id=doc.getAttribute("id")
- self._articleName=doc.getAttribute("moby:articleName")
- if self._articleName=="":
+ self.articleName=doc.getAttribute("moby:articleName")
+ if self.articleName=="":
- self._articleName=doc.getAttribute("articleName")
+ self.articleName=doc.getAttribute("articleName")
for elt in doc.childNodes:
if elt.nodeType==elt.TEXT_NODE or elt.nodeType==elt.CDATA_SECTION_NODE:
self.content=self.content+elt.nodeValue
if elt.nodeName=="CrossReference" or elt.nodeName=="moby:CrossReference":
- self._cross=[]
+ self.__cross__=[]
for ref in elt.childNodes:
- self._cross.append(ref.toxml())
+ self.__cross__.append(ref.toxml())
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="Integer" or elt.nodeName=="moby:Integer") and (elt.getAttribute("articleName")=="end_row" or elt.getAttribute("moby:articleName")=="end_row"):
t=MobyInteger()
t.fromMoby(elt.toxml())
@@ -59,5 +62,4 @@
if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName=="String" or elt.nodeName=="moby:String") and (elt.getAttribute("articleName")=="germplasm_name" or elt.getAttribute("moby:articleName")=="germplasm_name"):
t=MobyString()
t.fromMoby(elt.toxml())
- self.Germplasm_name=t.content
- del parseString, Node, NodeList
\ No newline at end of file
+ self.Germplasm_name=t.content
\ No newline at end of file
===================================================================
RCS file: /home/repository/moby/moby-live/Python/bioMoby/ontology/__init__.py,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Python/bioMoby/ontology/__init__.py 2004/12/08 14:47:49 1.1
+++ /home/repository/moby/moby-live/Python/bioMoby/ontology/__init__.py 2005/01/18 13:46:22 1.2
@@ -70,6 +70,7 @@
from TextPlain import MobyTextPlain
from RNASequence import MobyRNASequence
from B64_Encoded_Postscript import MobyB64_Encoded_Postscript
+from Gene_Expression_data import MobyGene_Expression_data
from TextHtml import MobyTextHtml
from NCBI_Blast_XML import MobyNCBI_Blast_XML
from EmblFlatfile import MobyEmblFlatfile
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