[MOBY-guts] biomoby commit

Yan Wong yanwong at pub.open-bio.org
Fri Apr 22 10:13:50 UTC 2005


yanwong
Fri Apr 22 06:13:50 EDT 2005
Update of /home/repository/moby/moby-live/Python/doc/public
In directory pub.open-bio.org:/tmp/cvs-serv4018/doc/public

Added Files:
	bioMoby.mobyDataTypes.MobyGeneric-class.html 
	bioMoby.mobyExceptions.EInvalidMobyXML-class.html 
	bioMoby.ontology.Alignment-module.html 
	bioMoby.ontology.Alignment.MobyAlignment-class.html 
	bioMoby.ontology.AlleleAssociation-module.html 
	bioMoby.ontology.AlleleAssociation.MobyAlleleAssociation-class.html 
	bioMoby.ontology.BLASTText-module.html 
	bioMoby.ontology.BLASTText.MobyBLASTText-class.html 
	bioMoby.ontology.ClustalMsfFormattedText-module.html 
	bioMoby.ontology.ClustalMsfFormattedText.MobyClustalMsfFormattedText-class.html 
	bioMoby.ontology.CompartmentPrediction-module.html 
	bioMoby.ontology.CompartmentPrediction.MobyCompartmentPrediction-class.html 
	bioMoby.ontology.FASTA_NA_multi-module.html 
	bioMoby.ontology.FASTA_NA_multi.MobyFASTA_NA_multi-class.html 
	bioMoby.ontology.FASTA_Text-module.html 
	bioMoby.ontology.FASTA_Text.MobyFASTA_Text-class.html 
	bioMoby.ontology.Gene_Expression_data-module.html 
	bioMoby.ontology.Gene_Expression_data.MobyGene_Expression_data-class.html 
	bioMoby.ontology.Genotype-module.html 
	bioMoby.ontology.Genotype.MobyGenotype-class.html 
	bioMoby.ontology.HFormatText-module.html 
	bioMoby.ontology.HFormatText.MobyHFormatText-class.html 
	bioMoby.ontology.InterProScanResult-module.html 
	bioMoby.ontology.InterProScanResult.MobyInterProScanResult-class.html 
	bioMoby.ontology.MSF-module.html 
	bioMoby.ontology.MSF.MobyMSF-class.html 
	bioMoby.ontology.MmCIFText-module.html 
	bioMoby.ontology.MmCIFText.MobyMmCIFText-class.html 
	bioMoby.ontology.MyTestingDataType_11024145298313-module.html 
	bioMoby.ontology.MyTestingDataType_11024145298313.MobyMyTestingDataType_11024145298313-class.html 
	bioMoby.ontology.MyTestingDataType_11103803700271-module.html 
	bioMoby.ontology.MyTestingDataType_11103803700271.MobyMyTestingDataType_11103803700271-class.html 
	bioMoby.ontology.MyTestingDataType_11103803700272-module.html 
	bioMoby.ontology.MyTestingDataType_11103803700272.MobyMyTestingDataType_11103803700272-class.html 
	bioMoby.ontology.MyTestingDataType_11103803700273-module.html 
	bioMoby.ontology.MyTestingDataType_11103803700273.MobyMyTestingDataType_11103803700273-class.html 
	bioMoby.ontology.MyTestingDataType_11103807352591-module.html 
	bioMoby.ontology.MyTestingDataType_11103807352591.MobyMyTestingDataType_11103807352591-class.html 
	bioMoby.ontology.MyTestingDataType_11103807352603-module.html 
	bioMoby.ontology.MyTestingDataType_11103807352603.MobyMyTestingDataType_11103807352603-class.html 
	bioMoby.ontology.MyTestingDataType_11103812733071-module.html 
	bioMoby.ontology.MyTestingDataType_11103812733071.MobyMyTestingDataType_11103812733071-class.html 
	bioMoby.ontology.MyTestingDataType_11109812917781-module.html 
	bioMoby.ontology.MyTestingDataType_11109812917781.MobyMyTestingDataType_11109812917781-class.html 
	bioMoby.ontology.NCBI_Blast_XML_Gif-module.html 
	bioMoby.ontology.NCBI_Blast_XML_Gif.MobyNCBI_Blast_XML_Gif-class.html 
	bioMoby.ontology.NCBI_Blast_XML_Gif_Map-module.html 
	bioMoby.ontology.NCBI_Blast_XML_Gif_Map.MobyNCBI_Blast_XML_Gif_Map-class.html 
	bioMoby.ontology.NCut_Input-module.html 
	bioMoby.ontology.NCut_Input.MobyNCut_Input-class.html 
	bioMoby.ontology.NCut_Matrix-module.html 
	bioMoby.ontology.NCut_Matrix.MobyNCut_Matrix-class.html 
	bioMoby.ontology.PDBText-module.html 
	bioMoby.ontology.PDBText.MobyPDBText-class.html 
	bioMoby.ontology.PHDText-module.html 
	bioMoby.ontology.PHDText.MobyPHDText-class.html 
	bioMoby.ontology.PMUTText-module.html 
	bioMoby.ontology.PMUTText.MobyPMUTText-class.html 
	bioMoby.ontology.PSeaTextFormatted-module.html 
	bioMoby.ontology.PSeaTextFormatted.MobyPSeaTextFormatted-class.html 
	bioMoby.ontology.Sample-module.html 
	bioMoby.ontology.Sample.MobySample-class.html 
	bioMoby.ontology.TestObject32-module.html 
	bioMoby.ontology.TestObject32.MobyTestObject32-class.html 
	bioMoby.webservice.Dispatcher.MultiThreadDispatcher-class.html 
	bioMoby.webservice.Dispatcher.SQLDispatcher-class.html 
	bioMoby.webservice.Invocators.SQLInvocator-class.html 
	bioMoby.webservice.TCBioMoby.body-class.html epydoc.css 
	toc-bioMoby.ontology.Alignment-module.html 
	toc-bioMoby.ontology.AlleleAssociation-module.html 
	toc-bioMoby.ontology.BLASTText-module.html 
	toc-bioMoby.ontology.ClustalMsfFormattedText-module.html 
	toc-bioMoby.ontology.CompartmentPrediction-module.html 
	toc-bioMoby.ontology.FASTA_NA_multi-module.html 
	toc-bioMoby.ontology.FASTA_Text-module.html 
	toc-bioMoby.ontology.Gene_Expression_data-module.html 
	toc-bioMoby.ontology.Genotype-module.html 
	toc-bioMoby.ontology.HFormatText-module.html 
	toc-bioMoby.ontology.InterProScanResult-module.html 
	toc-bioMoby.ontology.MSF-module.html 
	toc-bioMoby.ontology.MmCIFText-module.html 
	toc-bioMoby.ontology.MyTestingDataType_11024145298313-module.html 
	toc-bioMoby.ontology.MyTestingDataType_11103803700271-module.html 
	toc-bioMoby.ontology.MyTestingDataType_11103803700272-module.html 
	toc-bioMoby.ontology.MyTestingDataType_11103803700273-module.html 
	toc-bioMoby.ontology.MyTestingDataType_11103807352591-module.html 
	toc-bioMoby.ontology.MyTestingDataType_11103807352603-module.html 
	toc-bioMoby.ontology.MyTestingDataType_11103812733071-module.html 
	toc-bioMoby.ontology.MyTestingDataType_11109812917781-module.html 
	toc-bioMoby.ontology.NCBI_Blast_XML_Gif-module.html 
	toc-bioMoby.ontology.NCBI_Blast_XML_Gif_Map-module.html 
	toc-bioMoby.ontology.NCut_Input-module.html 
	toc-bioMoby.ontology.NCut_Matrix-module.html 
	toc-bioMoby.ontology.PDBText-module.html 
	toc-bioMoby.ontology.PHDText-module.html 
	toc-bioMoby.ontology.PMUTText-module.html 
	toc-bioMoby.ontology.PSeaTextFormatted-module.html 
	toc-bioMoby.ontology.Sample-module.html 
	toc-bioMoby.ontology.TestObject32-module.html 
Log Message:
added the two classes, a small commented example in the tutorials section and mofication on the documentation

moby-live/Python/doc/public bioMoby.mobyDataTypes.MobyGeneric-class.html,NONE,1.1 bioMoby.mobyExceptions.EInvalidMobyXML-class.html,NONE,1.1 bioMoby.ontology.Alignment-module.html,NONE,1.1 bioMoby.ontology.Alignment.MobyAlignment-class.html,NONE,1.1 bioMoby.ontology.AlleleAssociation-module.html,NONE,1.1 bioMoby.ontology.AlleleAssociation.MobyAlleleAssociation-class.html,NONE,1.1 bioMoby.ontology.BLASTText-module.html,NONE,1.1 bioMoby.ontology.BLASTText.MobyBLASTText-class.html,NONE,1.1 bioMoby.ontology.ClustalMsfFormattedText-module.html,NONE,1.1 bioMoby.ontology.ClustalMsfFormattedText.MobyClustalMsfFormattedText-class.html,NONE,1.1 bioMoby.ontology.CompartmentPrediction-module.html,NONE,1.1 bioMoby.ontology.CompartmentPrediction.MobyCompartmentPrediction-class.html,NONE,1.1 bioMoby.ontology.FASTA_NA_multi-module.html,NONE,1.1 bioMoby.ontology.FASTA_NA_multi.MobyFASTA_NA_multi-class.html,NONE,1.1 bioMoby.ontology.FASTA_Text-module.html,NONE,1.1 bioMoby.ontology.FASTA_Text.!
MobyFASTA_Text-class.html,NONE,1.1 bioMoby.ontology.Gene_Expression_data-module.html,NONE,1.1 bioMoby.ontology.Gene_Expression_data.MobyGene_Expression_data-class.html,NONE,1.1 bioMoby.ontology.Genotype-module.html,NONE,1.1 bioMoby.ontology.Genotype.MobyGenotype-class.html,NONE,1.1 bioMoby.ontology.HFormatText-module.html,NONE,1.1 bioMoby.ontology.HFormatText.MobyHFormatText-class.html,NONE,1.1 bioMoby.ontology.InterProScanResult-module.html,NONE,1.1 bioMoby.ontology.InterProScanResult.MobyInterProScanResult-class.html,NONE,1.1 bioMoby.ontology.MSF-module.html,NONE,1.1 bioMoby.ontology.MSF.MobyMSF-class.html,NONE,1.1 bioMoby.ontology.MmCIFText-module.html,NONE,1.1 bioMoby.ontology.MmCIFText.MobyMmCIFText-class.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11024145298313-module.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11024145298313.MobyMyTestingDataType_11024145298313-class.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11103803700271-module.html,NONE,1.1 bioMob!
y.ontology.MyTestingDataType_11103803700271.MobyMyTestingData!
Type_11103803700271-class.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11103803700272-module.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11103803700272.MobyMyTestingDataType_11103803700272-class.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11103803700273-module.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11103803700273.MobyMyTestingDataType_11103803700273-class.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11103807352591-module.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11103807352591.MobyMyTestingDataType_11103807352591-class.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11103807352603-module.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11103807352603.MobyMyTestingDataType_11103807352603-class.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11103812733071-module.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11103812733071.MobyMyTestingDataType_11103812733071-class.html,NONE,1.1 bioMoby.ontology.MyTestingDataType_11109812917781-module.ht!
ml,NONE,1.1 bioMoby.ontology.MyTestingDataType_11109812917781.MobyMyTestingDataType_11109812917781-class.html,NONE,1.1 bioMoby.ontology.NCBI_Blast_XML_Gif-module.html,NONE,1.1 bioMoby.ontology.NCBI_Blast_XML_Gif.MobyNCBI_Blast_XML_Gif-class.html,NONE,1.1 bioMoby.ontology.NCBI_Blast_XML_Gif_Map-module.html,NONE,1.1 bioMoby.ontology.NCBI_Blast_XML_Gif_Map.MobyNCBI_Blast_XML_Gif_Map-class.html,NONE,1.1 bioMoby.ontology.NCut_Input-module.html,NONE,1.1 bioMoby.ontology.NCut_Input.MobyNCut_Input-class.html,NONE,1.1 bioMoby.ontology.NCut_Matrix-module.html,NONE,1.1 bioMoby.ontology.NCut_Matrix.MobyNCut_Matrix-class.html,NONE,1.1 bioMoby.ontology.PDBText-module.html,NONE,1.1 bioMoby.ontology.PDBText.MobyPDBText-class.html,NONE,1.1 bioMoby.ontology.PHDText-module.html,NONE,1.1 bioMoby.ontology.PHDText.MobyPHDText-class.html,NONE,1.1 bioMoby.ontology.PMUTText-module.html,NONE,1.1 bioMoby.ontology.PMUTText.MobyPMUTText-class.html,NONE,1.1 bioMoby.ontology.PSeaTextFormatted-module.html,!
NONE,1.1 bioMoby.ontology.PSeaTextFormatted.MobyPSeaTextForma!
tted-class.html,NONE,1.1 bioMoby.ontology.Sample-module.html,NONE,1.1 bioMoby.ontology.Sample.MobySample-class.html,NONE,1.1 bioMoby.ontology.TestObject32-module.html,NONE,1.1 bioMoby.ontology.TestObject32.MobyTestObject32-class.html,NONE,1.1 bioMoby.webservice.Dispatcher.MultiThreadDispatcher-class.html,NONE,1.1 bioMoby.webservice.Dispatcher.SQLDispatcher-class.html,NONE,1.1 bioMoby.webservice.Invocators.SQLInvocator-class.html,NONE,1.1 bioMoby.webservice.TCBioMoby.body-class.html,NONE,1.1 epydoc.css,1.2,1.3 toc-bioMoby.ontology.Alignment-module.html,NONE,1.1 toc-bioMoby.ontology.AlleleAssociation-module.html,NONE,1.1 toc-bioMoby.ontology.BLASTText-module.html,NONE,1.1 toc-bioMoby.ontology.ClustalMsfFormattedText-module.html,NONE,1.1 toc-bioMoby.ontology.CompartmentPrediction-module.html,NONE,1.1 toc-bioMoby.ontology.FASTA_NA_multi-module.html,NONE,1.1 toc-bioMoby.ontology.FASTA_Text-module.html,NONE,1.1 toc-bioMoby.ontology.Gene_Expression_data-module.html,NONE,1.1 toc-bio!
Moby.ontology.Genotype-module.html,NONE,1.1 toc-bioMoby.ontology.HFormatText-module.html,NONE,1.1 toc-bioMoby.ontology.InterProScanResult-module.html,NONE,1.1 toc-bioMoby.ontology.MSF-module.html,NONE,1.1 toc-bioMoby.ontology.MmCIFText-module.html,NONE,1.1 toc-bioMoby.ontology.MyTestingDataType_11024145298313-module.html,NONE,1.1 toc-bioMoby.ontology.MyTestingDataType_11103803700271-module.html,NONE,1.1 toc-bioMoby.ontology.MyTestingDataType_11103803700272-module.html,NONE,1.1 toc-bioMoby.ontology.MyTestingDataType_11103803700273-module.html,NONE,1.1 toc-bioMoby.ontology.MyTestingDataType_11103807352591-module.html,NONE,1.1 toc-bioMoby.ontology.MyTestingDataType_11103807352603-module.html,NONE,1.1 toc-bioMoby.ontology.MyTestingDataType_11103812733071-module.html,NONE,1.1 toc-bioMoby.ontology.MyTestingDataType_11109812917781-module.html,NONE,1.1 toc-bioMoby.ontology.NCBI_Blast_XML_Gif-module.html,NONE,1.1 toc-bioMoby.ontology.NCBI_Blast_XML_Gif_Map-module.html,NONE,1.1 toc-bi!
oMoby.ontology.NCut_Input-module.html,NONE,1.1 toc-bioMoby.on!
tology.NCut_Matrix-module.html,NONE,1.1 toc-bioMoby.ontology.PDBText-module.html,NONE,1.1 toc-bioMoby.ontology.PHDText-module.html,NONE,1.1 toc-bioMoby.ontology.PMUTText-module.html,NONE,1.1 toc-bioMoby.ontology.PSeaTextFormatted-module.html,NONE,1.1 toc-bioMoby.ontology.Sample-module.html,NONE,1.1 toc-bioMoby.ontology.TestObject32-module.html,NONE,1.1
===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/epydoc.css,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3




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