From gordonp at pub.open-bio.org Mon Apr 4 13:42:17 2005 From: gordonp at pub.open-bio.org (Paul Gordon) Date: Mon Apr 4 13:24:57 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504041742.j34HgHwx019788@pub.open-bio.org> gordonp Mon Apr 4 13:42:17 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared In directory pub.open-bio.org:/tmp/cvs-serv19762/org/biomoby/shared Modified Files: MobyDataSimpleInstance.java Log Message: Added 'equals' method at request of Sophie Durand, as well as implementing Comparable interface moby-live/Java/src/main/org/biomoby/shared MobyDataSimpleInstance.java,1.4,1.5 =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataSimpleInstance.java,v retrieving revision 1.4 retrieving revision 1.5 diff -u -r1.4 -r1.5 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataSimpleInstance.java 2005/02/09 17:20:38 1.4 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataSimpleInstance.java 2005/04/04 17:42:17 1.5 @@ -22,9 +22,11 @@ * Having both modes is useful because the data instance created from a previous call can be * passed to a service search template by switching the XML mode. By default the object is in * SERVICE_XML_MODE. + * + * @author Paul Gordon (gordonp@ucalgary.ca) */ -public class MobyDataSimpleInstance extends MobyPrimaryDataSimple implements MobyDataInstance, Cloneable{ +public class MobyDataSimpleInstance extends MobyPrimaryDataSimple implements MobyDataInstance, Cloneable, Comparable{ public static final int CENTRAL_XML_MODE = 124; public static final int SERVICE_XML_MODE = 891; protected int xmlMode = SERVICE_XML_MODE; @@ -93,6 +95,57 @@ } /** + * Used to see if two objects are equivalent. + * If the passed in object is a MobyDataSimpleInstance, its getObject() value + * will be used for the comparison. The namespace and ID are ignored, + * only the value is compared (such as a MobyDataInteger or Integer or + * BigInteger vs. a MobyDataInteger). + */ + public boolean equals(Object passedInObject){ + Object ourObject = getObject(); + if(passedInObject != null && passedInObject instanceof MobyDataSimpleInstance){ + passedInObject = ((MobyDataSimpleInstance) passedInObject).getObject(); + } + return ourObject == passedInObject; + } + + /** + * This method lexically compares in the order of value, ID, name if passed in object is a MobyDataSimpleInstance. + * Otherwise it returns -1 (null fields get pushed to the end of the list). + * + * Child classes are encouraged to override this method for numerical comparison, etc. where + * appropriate, falling back to this method if the result is 0. + */ + public int compareTo(Object o){ + if(o == null || !(o instanceof MobyDataSimpleInstance)){ + return -1; + } + MobyDataSimpleInstance mdsi = (MobyDataSimpleInstance) o; + if(getValue() == null && mdsi.getValue() != null){ + return 1; + } + else if(getValue() != null && getValue().compareTo(mdsi.getValue()) != 0){ + return getValue().compareTo(mdsi.getValue()); + } + else if(getId() == null && mdsi.getId() != null){ + return 1; + } + else if(getId() != null && getId().compareTo(mdsi.getId()) != 0){ + return getId().compareTo(mdsi.getId()); + } + else if(getName() == null && mdsi.getName() != null){ + return 1; + } + else if(getName() != null){ + return getName().compareTo(mdsi.getName()); + } + // Equivalent in all three fields if we got to this point + else{ + return 0; + } + } + + /** * Determined whether toXML will return a Central template value or a service call instance value. * * @param mode one of CENTRAL_XML_MODE or SERVICE_XML_MODE From yanwong at pub.open-bio.org Tue Apr 5 09:44:34 2005 From: yanwong at pub.open-bio.org (Yan Wong) Date: Tue Apr 5 09:27:18 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504051344.j35DiYqJ023644@pub.open-bio.org> yanwong Tue Apr 5 09:44:34 EDT 2005 Update of /home/repository/moby/moby-live/Python/bioMoby In directory pub.open-bio.org:/tmp/cvs-serv23618 Modified Files: mobyMarshal.py Log Message: Corrected a bug in the unmarshaller that prevent it to return an unkwown object (not in the ontology package or in mobyDataTypes) moby-live/Python/bioMoby mobyMarshal.py,1.6,1.7 =================================================================== RCS file: /home/repository/moby/moby-live/Python/bioMoby/mobyMarshal.py,v retrieving revision 1.6 retrieving revision 1.7 diff -u -r1.6 -r1.7 --- /home/repository/moby/moby-live/Python/bioMoby/mobyMarshal.py 2005/02/18 15:54:10 1.6 +++ /home/repository/moby/moby-live/Python/bioMoby/mobyMarshal.py 2005/04/05 13:44:34 1.7 @@ -239,7 +239,7 @@ element=doc.firstChild - self.loadn(element) + return self.loadn(element) def m_Integer(self, value): """Turn a Integer XML element into an integer @@ -301,4 +301,4 @@ del MobyContent - return mc \ No newline at end of file + return mc From gordonp at pub.open-bio.org Tue Apr 5 11:13:27 2005 From: gordonp at pub.open-bio.org (Paul Gordon) Date: Tue Apr 5 10:55:53 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504051513.j35FDRD6024087@pub.open-bio.org> gordonp Tue Apr 5 11:13:27 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared In directory pub.open-bio.org:/tmp/cvs-serv24062/org/biomoby/shared Modified Files: MobyDataFloat.java Log Message: Fixed typos that cause Floast to clone into Ints moby-live/Java/src/main/org/biomoby/shared MobyDataFloat.java,1.2,1.3 =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataFloat.java,v retrieving revision 1.2 retrieving revision 1.3 diff -u -r1.2 -r1.3 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataFloat.java 2005/02/09 17:20:38 1.2 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataFloat.java 2005/04/05 15:13:27 1.3 @@ -15,7 +15,7 @@ /** * Constructor to use if the incoming value is a number object such as - * Float, Double, Integer, BigDecimal, etc. + * Float, Double, iNTeger, BigDecimal, etc. */ public MobyDataFloat(String articleName, Number n){ super(articleName); @@ -54,7 +54,7 @@ } public Object clone(){ - MobyDataInt copy = new MobyDataInt(getName(), value); + MobyDataFloat copy = new MobyDataFloat(getName(), value); copy.setDataType(getDataType()); copy.setId(getId()); copy.setNamespaces(getNamespaces()); @@ -72,6 +72,16 @@ return ""+value; } + /** + * Overrides default compare to provide a numerical comparison for floats and integers + */ + public int compareTo(Object o){ + BigDecimal otherNumber = null; + if(o instanceof MobyDataSimpleInstance){ + + } + } + public String toXML(){ MobyNamespace[] ns = getNamespaces(); if(xmlMode == SERVICE_XML_MODE){ From gordonp at pub.open-bio.org Tue Apr 5 11:14:53 2005 From: gordonp at pub.open-bio.org (Paul Gordon) Date: Tue Apr 5 10:57:19 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504051514.j35FErqk024120@pub.open-bio.org> gordonp Tue Apr 5 11:14:53 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared In directory pub.open-bio.org:/tmp/cvs-serv24095/org/biomoby/shared Modified Files: MobyDataSimpleInstance.java Log Message: Changed equals() to use underlying Java equals() rather than reference comparison (momentary lapse of reason in initial version) moby-live/Java/src/main/org/biomoby/shared MobyDataSimpleInstance.java,1.5,1.6 =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataSimpleInstance.java,v retrieving revision 1.5 retrieving revision 1.6 diff -u -r1.5 -r1.6 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataSimpleInstance.java 2005/04/04 17:42:17 1.5 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataSimpleInstance.java 2005/04/05 15:14:53 1.6 @@ -100,13 +100,16 @@ * will be used for the comparison. The namespace and ID are ignored, * only the value is compared (such as a MobyDataInteger or Integer or * BigInteger vs. a MobyDataInteger). + * + * @return true if the values are equals according to the underlying Java object's equals() method + * @throws ClassCastException if and only if a child class or underlying Java object decides the comparison classes are invalid */ - public boolean equals(Object passedInObject){ + public boolean equals(Object passedInObject) throws ClassCastException{ Object ourObject = getObject(); if(passedInObject != null && passedInObject instanceof MobyDataSimpleInstance){ passedInObject = ((MobyDataSimpleInstance) passedInObject).getObject(); } - return ourObject == passedInObject; + return ourObject.equals(passedInObject); } /** From yanwong at pub.open-bio.org Tue Apr 5 11:59:47 2005 From: yanwong at pub.open-bio.org (Yan Wong) Date: Tue Apr 5 11:42:14 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504051559.j35Fxlxe024249@pub.open-bio.org> yanwong Tue Apr 5 11:59:47 EDT 2005 Update of /home/repository/moby/moby-live/Python/utils In directory pub.open-bio.org:/tmp/cvs-serv24223 Modified Files: moby2python.py Log Message: The scripts generate correctly the marshall and unmarshall code of autogenerated objects moby-live/Python/utils moby2python.py,1.6,1.7 =================================================================== RCS file: /home/repository/moby/moby-live/Python/utils/moby2python.py,v retrieving revision 1.6 retrieving revision 1.7 diff -u -r1.6 -r1.7 --- /home/repository/moby/moby-live/Python/utils/moby2python.py 2005/02/07 14:23:13 1.6 +++ /home/repository/moby/moby-live/Python/utils/moby2python.py 2005/04/05 15:59:47 1.7 @@ -54,7 +54,7 @@ res.append(" \"\"\" Load the attributes from an XML string\n \"\"\"") res.append(" from bioMoby.mobyMarshal import MobyUnmarshaller") res.append(" doc=value") - res.append(" if isinstance(value, str):") + res.append(" if isinstance(value,str):") res.append(" doc=parseString(value).firstChild") res.append(" um=MobyUnmarshaller()") res.append(" self.content=\"\"") @@ -85,13 +85,11 @@ res.append(" if elt.nodeName==\"CrossReference\" or elt.nodeName==\"moby:CrossReference\":") res.append(" self.__cross__=[]") res.append(" for ref in elt.childNodes:") - res.append(" if ref.nodeType==ref.ELEMENT_NODE:") - res.append(" self.__cross__.append(um.loadn(ref))") - + res.append(" self.__cross__.append(ref)") for parameter in parameters: if parameter[0] not in attributes and parameter[0]!="content": - res.append(" if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName==\""+parameter[2]+"\" or elt.nodeName==\"moby:"+parameter[2]+"\") and (elt.getAttribute(\"articleName\")==\""+parameter[0]+"\" or elt.getAttribute(\"moby:articleName\")==\""+parameter[0]+"\"):") + res.append(" if elt.nodeType==elt.ELEMENT_NODE and (elt.nodeName==\""+parameter[2]+"\" or elt.nodeName==\"moby:"+parameter[2]+"\") and (elt.getAttribute(\"articleName\")==\""+cleanName(parameter[0])+"\" or elt.getAttribute(\"moby:articleName\")==\""+cleanName(parameter[0])+"\"):") if parameter[2]=='Integer' or parameter[2]=='Float' or parameter[2]=='String': res.append(" t="+makeMobyName(parameter[2])+"()") @@ -102,9 +100,14 @@ res.append(" self."+cleanName(parameter[0])+".append(t.content)") elif parameter[0]!='content': - res.append(" self."+cleanName(parameter[0])+"="+makeMobyName(parameter[2])+"()") - res.append(" self."+cleanName(parameter[0])+".fromMoby(elt)") - + if parameter[1]!="[]": + res.append(" self."+cleanName(parameter[0])+"="+makeMobyName(parameter[2])+"()") + res.append(" self."+cleanName(parameter[0])+".fromMoby(elt)") + else: + res.append(" auxObject="+makeMobyName(parameter[2])+"()") + res.append(" auxObject.fromMoby(elt)") + res.append(" self."+cleanName(parameter[0])+".append(auxObject)") + return "\n".join(res) def getPropertiesFromAncestor(ancestor): @@ -136,7 +139,7 @@ if ancestor not in paramDict.keys(): makeInterface(ancestor, path) - + for aProp in getPropertiesFromAncestor(ancestor): properties.append(aProp) @@ -153,7 +156,7 @@ properties.append((articleName,"None",articleType)) - + if "HAS" in objectDefinition["Relationship"].keys(): for hasRelationship in objectDefinition["Relationship"]["HAS"]: articleName=hasRelationship[0] @@ -200,9 +203,9 @@ pyResult.append("class "+mObjectName+":\n") if "Description" in objectDefinition: - description=objectDefinition["Description"] + description=objectDefinition["Description"] if "authURI" in objectDefinition: - author=objectDefinition["authURI"] + author=objectDefinition["authURI"] if "contactEmail" in objectDefinition: contact=objectDefinition["contactEmail"] @@ -293,6 +296,7 @@ toRead.append(f) try: toRead.remove("__init__.py") + toRead.remove("CVS") except: pass From kawas at pub.open-bio.org Thu Apr 7 11:44:30 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 11:27:10 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071544.j37FiUl5000680@pub.open-bio.org> kawas Thu Apr 7 11:44:30 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/text In directory pub.open-bio.org:/tmp/cvs-serv641 Removed Files: AlignCenter16.gif AlignCenter24.gif AlignJustify16.gif AlignJustify24.gif AlignLeft16.gif AlignLeft24.gif AlignRight16.gif AlignRight24.gif Bold16.gif Bold24.gif Italic16.gif Italic24.gif Normal16.gif Normal24.gif Underline16.gif Underline24.gif Log Message: removing old packages created by eddie and replacing them with newly updated ones. moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/text AlignCenter16.gif,1.1,NONE AlignCenter24.gif,1.1,NONE AlignJustify16.gif,1.1,NONE AlignJustify24.gif,1.1,NONE AlignLeft16.gif,1.1,NONE AlignLeft24.gif,1.1,NONE AlignRight16.gif,1.1,NONE AlignRight24.gif,1.1,NONE Bold16.gif,1.1,NONE Bold24.gif,1.1,NONE Italic16.gif,1.1,NONE Italic24.gif,1.1,NONE Normal16.gif,1.1,NONE Normal24.gif,1.1,NONE Underline16.gif,1.1,NONE Underline24.gif,1.1,NONE rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/text/RCS/AlignCenter16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/text/RCS/AlignCenter24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/text/RCS/AlignJustify16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/text/RCS/AlignJustify24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/text/RCS/AlignLeft16.gif,v: No such file or directory rcsdiff: 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/home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/text/RCS/Italic24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/text/RCS/Normal16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/text/RCS/Normal24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/text/RCS/Underline16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/text/RCS/Underline24.gif,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 11:45:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 11:30:30 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071545.j37FjJIe001079@pub.open-bio.org> kawas Thu Apr 7 11:45:19 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceTypeCreationTool In directory pub.open-bio.org:/tmp/cvs-serv690/serviceTypeCreationTool Removed Files: Construct.java Household.java MobyTree.java README ServiceTypeApplet.java Log Message: removing old packages created by eddie and replacing them with newly updated ones. moby-live/Java/src/main/org/biomoby/client/gui/serviceTypeCreationTool Construct.java,1.1,NONE Household.java,1.1,NONE MobyTree.java,1.1,NONE README,1.1,NONE ServiceTypeApplet.java,1.3,NONE rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceTypeCreationTool/RCS/Construct.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceTypeCreationTool/RCS/Household.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceTypeCreationTool/RCS/MobyTree.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceTypeCreationTool/RCS/README,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceTypeCreationTool/RCS/ServiceTypeApplet.java,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 11:45:18 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 11:30:36 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071545.j37FjIXp000957@pub.open-bio.org> kawas Thu Apr 7 11:45:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/navigation In directory pub.open-bio.org:/tmp/cvs-serv690/img/toolbarButtonGraphics/navigation Removed Files: Back16.gif Back24.gif Down16.gif Down24.gif Forward16.gif Forward24.gif Home16.gif 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/home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/navigation/RCS/Up24.gif,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 11:45:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 11:30:37 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071545.j37FjJ80001020@pub.open-bio.org> kawas Thu Apr 7 11:45:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool In directory pub.open-bio.org:/tmp/cvs-serv690/objectCreationTool Removed Files: Construct.java Household.java MobyPlainText.java MobyTree.java MobyUtilities.java MobyXML.java ObjectCreationTool.java Pair.java PopUpWindow.java Registration.java SubmissionWindow.java TreeMouseListener.java TreeWindow.java Log Message: removing old packages created by eddie and replacing them with newly updated ones. moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool Construct.java,1.2,NONE Household.java,1.1,NONE MobyPlainText.java,1.1,NONE MobyTree.java,1.2,NONE MobyUtilities.java,1.1,NONE MobyXML.java,1.2,NONE ObjectCreationTool.java,1.3,NONE Pair.java,1.1,NONE PopUpWindow.java,1.2,NONE Registration.java,1.2,NONE SubmissionWindow.java,1.2,NONE TreeMouseListener.java,1.2,NONE TreeWindow.java,1.2,NONE rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool/RCS/Construct.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool/RCS/Household.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool/RCS/MobyPlainText.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool/RCS/MobyTree.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool/RCS/MobyUtilities.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool/RCS/MobyXML.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool/RCS/ObjectCreationTool.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool/RCS/Pair.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool/RCS/PopUpWindow.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool/RCS/Registration.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool/RCS/SubmissionWindow.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool/RCS/TreeMouseListener.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/objectCreationTool/RCS/TreeWindow.java,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 11:45:18 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 11:30:44 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071545.j37FjIoe000929@pub.open-bio.org> kawas Thu Apr 7 11:45:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media In directory pub.open-bio.org:/tmp/cvs-serv690/img/toolbarButtonGraphics/media Removed Files: FastForward16.gif FastForward24.gif Movie16.gif Movie24.gif Pause16.gif Pause24.gif Play16.gif Play24.gif Rewind16.gif Rewind24.gif StepBack16.gif StepBack24.gif StepForward16.gif StepForward24.gif Stop16.gif Stop24.gif Volume16.gif Volume24.gif Log Message: removing old packages created by eddie and replacing them with newly updated ones. moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media FastForward16.gif,1.1,NONE FastForward24.gif,1.1,NONE Movie16.gif,1.1,NONE Movie24.gif,1.1,NONE Pause16.gif,1.1,NONE Pause24.gif,1.1,NONE Play16.gif,1.1,NONE Play24.gif,1.1,NONE Rewind16.gif,1.1,NONE Rewind24.gif,1.1,NONE StepBack16.gif,1.1,NONE StepBack24.gif,1.1,NONE StepForward16.gif,1.1,NONE StepForward24.gif,1.1,NONE Stop16.gif,1.1,NONE Stop24.gif,1.1,NONE Volume16.gif,1.1,NONE Volume24.gif,1.1,NONE rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/FastForward16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/FastForward24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/Movie16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/Movie24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/Pause16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/Pause24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/Play16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/Play24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/Rewind16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/Rewind24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/StepBack16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/StepBack24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/StepForward16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/StepForward24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/Stop16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/Stop24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/Volume16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/media/RCS/Volume24.gif,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 11:45:17 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 11:30:47 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071545.j37FjHQ4000785@pub.open-bio.org> kawas Thu Apr 7 11:45:17 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development In directory pub.open-bio.org:/tmp/cvs-serv690/img/toolbarButtonGraphics/development Removed Files: Applet16.gif Applet24.gif Application16.gif Application24.gif ApplicationDeploy16.gif ApplicationDeploy24.gif Bean16.gif Bean24.gif BeanAdd16.gif BeanAdd24.gif EnterpriseJavaBean16.gif EnterpriseJavaBean24.gif EnterpriseJavaBeanJar16.gif EnterpriseJavaBeanJar24.gif Host16.gif Host24.gif J2EEApplication16.gif J2EEApplication24.gif J2EEApplicationClient16.gif J2EEApplicationClient24.gif J2EEApplicationClientAdd16.gif J2EEApplicationClientAdd24.gif J2EEServer16.gif J2EEServer24.gif Jar16.gif Jar24.gif JarAdd16.gif JarAdd24.gif Server16.gif Server24.gif War16.gif War24.gif WarAdd16.gif WarAdd24.gif WebComponent16.gif WebComponent24.gif WebComponentAdd16.gif WebComponentAdd24.gif Log Message: removing old packages created by eddie and replacing them with newly updated ones. moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development Applet16.gif,1.1,NONE Applet24.gif,1.1,NONE Application16.gif,1.1,NONE Application24.gif,1.1,NONE ApplicationDeploy16.gif,1.1,NONE ApplicationDeploy24.gif,1.1,NONE Bean16.gif,1.1,NONE Bean24.gif,1.1,NONE BeanAdd16.gif,1.1,NONE BeanAdd24.gif,1.1,NONE EnterpriseJavaBean16.gif,1.1,NONE EnterpriseJavaBean24.gif,1.1,NONE EnterpriseJavaBeanJar16.gif,1.1,NONE EnterpriseJavaBeanJar24.gif,1.1,NONE Host16.gif,1.1,NONE Host24.gif,1.1,NONE J2EEApplication16.gif,1.1,NONE J2EEApplication24.gif,1.1,NONE J2EEApplicationClient16.gif,1.1,NONE J2EEApplicationClient24.gif,1.1,NONE J2EEApplicationClientAdd16.gif,1.1,NONE J2EEApplicationClientAdd24.gif,1.1,NONE J2EEServer16.gif,1.1,NONE J2EEServer24.gif,1.1,NONE Jar16.gif,1.1,NONE Jar24.gif,1.1,NONE JarAdd16.gif,1.1,NONE JarAdd24.gif,1.1,NONE Server16.gif,1.1,NONE Server24.gif,1.1,NONE War16.gif,1.1,NONE War24.gif,1.1,NONE WarAdd16.gif,1.1,NONE WarAdd24.gif,1.1,N! ONE WebComponent16.gif,1.1,NONE WebComponent24.gif,1.1,NONE WebComponentAdd16.gif,1.1,NONE WebComponentAdd24.gif,1.1,NONE rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/Applet16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/Applet24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/Application16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/Application24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/ApplicationDeploy16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/ApplicationDeploy24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/Bean16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/Bean24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/BeanAdd16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/BeanAdd24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/EnterpriseJavaBean16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/EnterpriseJavaBean24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/EnterpriseJavaBeanJar16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/EnterpriseJavaBeanJar24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/Host16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/Host24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/J2EEApplication16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/J2EEApplication24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/J2EEApplicationClient16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/J2EEApplicationClient24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/J2EEApplicationClientAdd16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/J2EEApplicationClientAdd24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/J2EEServer16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/J2EEServer24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/Jar16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/Jar24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/JarAdd16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/JarAdd24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/Server16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/Server24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/War16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/War24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/WarAdd16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/WarAdd24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/WebComponent16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/WebComponent24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/WebComponentAdd16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/development/RCS/WebComponentAdd24.gif,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 11:45:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 11:30:50 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071545.j37FjJIl001059@pub.open-bio.org> kawas Thu Apr 7 11:45:19 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool In directory pub.open-bio.org:/tmp/cvs-serv690/serviceInstanceCreationTool Removed Files: ButtonBeautifier.java Construct.java HelpActionListener.java Household.java InputOutputActionListener.java InputOutputFocusListener.java MobyCollection.java MobyInputOutputData.java MobyTree.java MobyUtilities.java NamespaceListener.java NamespaceTree.java Pair.java README Service.java ServiceActionListener.java ServiceCreationTool.java ServiceFocusListener.java ServiceInstancePanelFactory.java ServiceTypeTree.java TreeListener.java Log Message: removing old packages created by eddie and replacing them with newly updated ones. moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool ButtonBeautifier.java,1.1,NONE Construct.java,1.1,NONE HelpActionListener.java,1.1,NONE Household.java,1.1,NONE InputOutputActionListener.java,1.1,NONE InputOutputFocusListener.java,1.1,NONE MobyCollection.java,1.1,NONE MobyInputOutputData.java,1.2,NONE MobyTree.java,1.1,NONE MobyUtilities.java,1.4,NONE NamespaceListener.java,1.1,NONE NamespaceTree.java,1.2,NONE Pair.java,1.1,NONE README,1.1,NONE Service.java,1.1,NONE ServiceActionListener.java,1.1,NONE ServiceCreationTool.java,1.3,NONE ServiceFocusListener.java,1.1,NONE ServiceInstancePanelFactory.java,1.6,NONE ServiceTypeTree.java,1.2,NONE TreeListener.java,1.2,NONE rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/ButtonBeautifier.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/Construct.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/HelpActionListener.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/Household.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/InputOutputActionListener.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/InputOutputFocusListener.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/MobyCollection.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/MobyInputOutputData.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/MobyTree.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/MobyUtilities.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/NamespaceListener.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/NamespaceTree.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/Pair.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/README,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/Service.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/ServiceActionListener.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/ServiceCreationTool.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/ServiceFocusListener.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/ServiceInstancePanelFactory.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/ServiceTypeTree.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/serviceInstanceCreationTool/RCS/TreeListener.java,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 11:45:18 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 11:31:03 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071545.j37FjIlt000895@pub.open-bio.org> kawas Thu Apr 7 11:45:17 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/general In directory pub.open-bio.org:/tmp/cvs-serv690/img/toolbarButtonGraphics/general Removed Files: About16.gif About24.gif Add16.gif Add24.gif AlignBottom16.gif AlignBottom24.gif AlignCenter16.gif AlignCenter24.gif AlignJustifyHorizontal16.gif AlignJustifyHorizontal24.gif AlignJustifyVertical16.gif AlignJustifyVertical24.gif AlignLeft16.gif AlignLeft24.gif AlignRight16.gif AlignRight24.gif AlignTop16.gif AlignTop24.gif Bookmarks16.gif Bookmarks24.gif ComposeMail16.gif ComposeMail24.gif ContextualHelp16.gif ContextualHelp24.gif Copy16.gif Copy24.gif Cut16.gif Cut24.gif Delete16.gif Delete24.gif Edit16.gif Edit24.gif Export16.gif Export24.gif Find16.gif Find24.gif FindAgain16.gif FindAgain24.gif Help16.gif Help24.gif History16.gif History24.gif Import16.gif Import24.gif Information16.gif Information24.gif New16.gif New24.gif Open16.gif Open24.gif PageSetup16.gif PageSetup24.gif Paste16.gif Paste24.gif Preferences16.gif Preferences24.gif Print16.gif Print24.gif PrintPreview16.gif PrintPreview24.gif Properties16.gif Properties24.gif Redo16.gif Redo24.gif Refresh16.gif Refresh24.gif Remove16.gif Remove24.gif Replace16.gif Replace24.gif Save16.gif Save24.gif SaveAll16.gif SaveAll24.gif SaveAs16.gif SaveAs24.gif Search16.gif Search24.gif SendMail16.gif SendMail24.gif Stop16.gif Stop24.gif TipOfTheDay16.gif TipOfTheDay24.gif Undo16.gif Undo24.gif Zoom16.gif Zoom24.gif ZoomIn16.gif ZoomIn24.gif ZoomOut16.gif ZoomOut24.gif Log Message: removing old packages created by eddie and replacing them with newly updated ones. moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/general About16.gif,1.1,NONE 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/home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/general/RCS/ZoomIn16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/general/RCS/ZoomIn24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/general/RCS/ZoomOut16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/general/RCS/ZoomOut24.gif,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 11:45:18 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 11:31:04 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071545.j37FjIAR000984@pub.open-bio.org> kawas Thu Apr 7 11:45:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/table In directory pub.open-bio.org:/tmp/cvs-serv690/img/toolbarButtonGraphics/table Removed Files: ColumnDelete16.gif ColumnDelete24.gif ColumnInsertAfter16.gif ColumnInsertAfter24.gif ColumnInsertBefore16.gif ColumnInsertBefore24.gif RowDelete16.gif RowDelete24.gif RowInsertAfter16.gif RowInsertAfter24.gif RowInsertBefore16.gif RowInsertBefore24.gif Log Message: removing old packages created by eddie and replacing them with newly updated ones. moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/table ColumnDelete16.gif,1.1,NONE ColumnDelete24.gif,1.1,NONE ColumnInsertAfter16.gif,1.1,NONE ColumnInsertAfter24.gif,1.1,NONE ColumnInsertBefore16.gif,1.1,NONE ColumnInsertBefore24.gif,1.1,NONE RowDelete16.gif,1.1,NONE RowDelete24.gif,1.1,NONE RowInsertAfter16.gif,1.1,NONE RowInsertAfter24.gif,1.1,NONE RowInsertBefore16.gif,1.1,NONE RowInsertBefore24.gif,1.1,NONE rcsdiff: 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/home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/table/RCS/RowDelete16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/table/RCS/RowDelete24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/table/RCS/RowInsertAfter16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/table/RCS/RowInsertAfter24.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/table/RCS/RowInsertBefore16.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/toolbarButtonGraphics/table/RCS/RowInsertBefore24.gif,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 11:45:17 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 11:32:29 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071545.j37FjHSo000727@pub.open-bio.org> kawas Thu Apr 7 11:45:17 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img In directory pub.open-bio.org:/tmp/cvs-serv690/img Removed Files: LICENSE MOBY-S.jpeg bio.gif java.gif left.gif middle.gif moby.gif moby1.gif moby_small.gif right.gif Log Message: removing old packages created by eddie and replacing them with newly updated ones. moby-live/Java/src/main/org/biomoby/client/gui/img LICENSE,1.1,NONE MOBY-S.jpeg,1.1,NONE bio.gif,1.1,NONE java.gif,1.1,NONE left.gif,1.1,NONE middle.gif,1.1,NONE moby.gif,1.1,NONE moby1.gif,1.1,NONE moby_small.gif,1.1,NONE right.gif,1.1,NONE rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/RCS/LICENSE,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/RCS/MOBY-S.jpeg,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/RCS/bio.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/RCS/java.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/RCS/left.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/RCS/middle.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/RCS/moby.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/RCS/moby1.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/RCS/moby_small.gif,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/img/RCS/right.gif,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:33:07 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 12:16:21 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071633.j37GX7Iw001689@pub.open-bio.org> kawas Thu Apr 7 12:33:07 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/embl/ebi/soap In directory pub.open-bio.org:/tmp/cvs-serv1652/embl/ebi/soap Modified Files: SoapUtils.java SOAPToolkitAxis.java SOAPToolkit.java AxisUtils.java Log Message: Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/embl/ebi/soap SoapUtils.java,1.1,1.2 SOAPToolkitAxis.java,1.1,1.2 SOAPToolkit.java,1.1,1.2 AxisUtils.java,1.1,1.2 =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/embl/ebi/soap/SoapUtils.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/embl/ebi/soap/SoapUtils.java 2004/10/18 14:49:30 1.1 +++ /home/repository/moby/moby-live/Java/src/main/embl/ebi/soap/SoapUtils.java 2005/04/07 16:33:07 1.2 @@ -6,11 +6,10 @@ package embl.ebi.soap; -import embl.ebi.tools.*; -import embl.ebi.utils.*; +import java.util.Vector; -import java.util.*; -import java.net.*; +import embl.ebi.tools.ICreator; +import embl.ebi.utils.GException; /** =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/embl/ebi/soap/SOAPToolkitAxis.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/embl/ebi/soap/SOAPToolkitAxis.java 2004/10/18 14:49:30 1.1 +++ /home/repository/moby/moby-live/Java/src/main/embl/ebi/soap/SOAPToolkitAxis.java 2005/04/07 16:33:07 1.2 @@ -7,21 +7,17 @@ package embl.ebi.soap; -import embl.ebi.tools.*; -import embl.ebi.utils.*; +import java.net.MalformedURLException; +import java.net.URL; +import java.util.Enumeration; +import java.util.Vector; -import org.apache.axis.*; -import org.apache.axis.transport.http.*; -import org.apache.axis.session.*; -import org.apache.axis.utils.*; -import org.apache.axis.AxisEngine.*; -import org.apache.axis.server.*; -import org.w3c.dom.Document; -import javax.servlet.http.*; - -import java.util.*; -import java.io.*; -import java.net.*; +import javax.servlet.http.HttpServletRequest; + +import org.apache.axis.MessageContext; +import org.apache.axis.transport.http.HTTPConstants; + +import embl.ebi.utils.GException; /** =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/embl/ebi/soap/SOAPToolkit.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/embl/ebi/soap/SOAPToolkit.java 2004/10/18 14:49:30 1.1 +++ /home/repository/moby/moby-live/Java/src/main/embl/ebi/soap/SOAPToolkit.java 2005/04/07 16:33:07 1.2 @@ -7,10 +7,10 @@ package embl.ebi.soap; -import embl.ebi.utils.*; +import java.net.URL; +import java.util.Enumeration; -import java.util.*; -import java.net.*; +import embl.ebi.utils.GException; /** * An interface defining what can be provided by a SOAP toolkit (by =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/embl/ebi/soap/AxisUtils.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/embl/ebi/soap/AxisUtils.java 2004/10/18 14:49:30 1.1 +++ /home/repository/moby/moby-live/Java/src/main/embl/ebi/soap/AxisUtils.java 2005/04/07 16:33:07 1.2 @@ -7,16 +7,19 @@ package embl.ebi.soap; -import embl.ebi.utils.*; +import java.io.ByteArrayOutputStream; +import java.io.PrintStream; +import java.net.URL; -import org.apache.axis.AxisFault; import javax.xml.namespace.QName; import javax.xml.rpc.ServiceException; -import org.apache.axis.client.*; -import org.apache.axis.*; -import java.io.*; -import java.net.*; +import org.apache.axis.AxisFault; +import org.apache.axis.client.Call; +import org.apache.axis.client.Service; + +import embl.ebi.utils.GException; +import embl.ebi.utils.StringUtils; /** * This is a set of several utility methods which may be useful for From kawas at pub.open-bio.org Thu Apr 7 12:37:02 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 12:19:34 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071637.j37Gb2B0001815@pub.open-bio.org> kawas Thu Apr 7 12:37:02 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client In directory pub.open-bio.org:/tmp/cvs-serv1723/org/biomoby/client Modified Files: CentralImpl.java Graphviz.java MobyRequest.java FileCache.java CentralDigestImpl.java ServicesEdge.java SimpleCache.java DataTypeConnector.java RDF.java GraphsServlet.java FilterServices.java ServletFileCache.java DataServiceEdge.java Taverna.java CentralDigestCachedImpl.java ServiceConnections.java SimpleFileCache.java Log Message: Okay, i am trying again ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client CentralImpl.java,1.19,1.20 Graphviz.java,1.5,1.6 MobyRequest.java,1.7,1.8 FileCache.java,1.4,1.5 CentralDigestImpl.java,1.1,1.2 ServicesEdge.java,1.4,1.5 SimpleCache.java,1.2,1.3 DataTypeConnector.java,1.1,1.2 RDF.java,1.1,1.2 GraphsServlet.java,1.7,1.8 FilterServices.java,1.4,1.5 ServletFileCache.java,1.3,1.4 DataServiceEdge.java,1.1,1.2 Taverna.java,1.1,1.2 CentralDigestCachedImpl.java,1.2,1.3 ServiceConnections.java,1.3,1.4 SimpleFileCache.java,1.1,1.2 =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/CentralImpl.java,v retrieving revision 1.19 retrieving revision 1.20 diff -u -r1.19 -r1.20 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/CentralImpl.java 2004/12/05 22:28:02 1.19 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/CentralImpl.java 2005/04/07 16:37:02 1.20 @@ -7,17 +7,41 @@ package org.biomoby.client; -import org.biomoby.shared.*; - -import org.apache.axis.client.*; -import org.apache.axis.*; -import javax.xml.namespace.QName; - -import org.w3c.dom.*; - -import java.util.*; -import java.io.*; -import java.net.*; +import java.io.ByteArrayInputStream; +import java.io.File; +import java.io.FileOutputStream; +import java.io.IOException; +import java.io.PrintStream; +import java.net.MalformedURLException; +import java.net.URL; +import java.util.HashMap; +import java.util.Hashtable; +import java.util.Iterator; +import java.util.Map; +import java.util.Properties; +import java.util.Vector; + +import org.apache.axis.AxisFault; +import org.apache.axis.client.Call; +import org.apache.axis.client.Service; +import org.biomoby.shared.Central; +import org.biomoby.shared.MobyData; +import org.biomoby.shared.MobyDataType; +import org.biomoby.shared.MobyException; +import org.biomoby.shared.MobyNamespace; +import org.biomoby.shared.MobyPrimaryDataSet; +import org.biomoby.shared.MobyPrimaryDataSimple; +import org.biomoby.shared.MobyRelationship; +import org.biomoby.shared.MobySecondaryData; +import org.biomoby.shared.MobyService; +import org.biomoby.shared.MobyServiceType; +import org.biomoby.shared.NoSuccessException; +import org.biomoby.shared.PendingCurationException; +import org.biomoby.shared.Utils; +import org.w3c.dom.Document; +import org.w3c.dom.Element; +import org.w3c.dom.Node; +import org.w3c.dom.NodeList; /** * A default implementation of the =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/Graphviz.java,v retrieving revision 1.5 retrieving revision 1.6 diff -u -r1.5 -r1.6 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/Graphviz.java 2004/10/18 14:35:06 1.5 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/Graphviz.java 2005/04/07 16:37:02 1.6 @@ -6,14 +6,12 @@ package org.biomoby.client; -import java.util.Enumeration; -import java.util.Hashtable; import java.util.HashSet; import java.util.Properties; -import org.biomoby.shared.MobyService; import org.biomoby.shared.MobyDataType; import org.biomoby.shared.MobyRelationship; +import org.biomoby.shared.MobyService; import org.biomoby.shared.MobyServiceType; import org.biomoby.shared.Utils; =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/MobyRequest.java,v retrieving revision 1.7 retrieving revision 1.8 diff -u -r1.7 -r1.8 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/MobyRequest.java 2005/02/15 17:47:39 1.7 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/MobyRequest.java 2005/04/07 16:37:02 1.8 @@ -1,38 +1,43 @@ package org.biomoby.client; // Defines Web service input, output, access -import org.biomoby.shared.*; - -// Transport -import org.apache.axis.message.SOAPBody; -import org.apache.axis.client.Call; -import javax.xml.rpc.encoding.XMLType; -import javax.xml.rpc.ParameterMode; -import javax.xml.rpc.Service; +import java.io.PrintStream; +import java.io.StringBufferInputStream; +import java.util.Hashtable; +import java.util.Vector; -// JAXP Parsing -import javax.xml.parsers.DocumentBuilderFactory; +import javax.xml.namespace.QName; import javax.xml.parsers.DocumentBuilder; +import javax.xml.parsers.DocumentBuilderFactory; import javax.xml.parsers.ParserConfigurationException; +import javax.xml.rpc.Service; import javax.xml.transform.TransformerException; -import javax.xml.namespace.QName; -import org.w3c.dom.*; - -// Utilities -import java.util.Hashtable; -import java.util.Vector; -import java.io.ByteArrayInputStream; -import org.apache.xpath.XPath; // compiled xpath statement -import org.apache.xpath.XPathContext; //runtime environment in which XPath is executed -import org.apache.xpath.objects.XObject; +import org.apache.axis.client.Call; +import org.apache.axis.message.MessageElement; import org.apache.xml.utils.PrefixResolver; import org.apache.xml.utils.PrefixResolverDefault; +import org.apache.xpath.XPath; +import org.apache.xpath.XPathContext; import org.apache.xpath.objects.XNodeSet; +import org.apache.xpath.objects.XObject; +import org.biomoby.shared.Central; +import org.biomoby.shared.MobyData; +import org.biomoby.shared.MobyDataInstance; +import org.biomoby.shared.MobyDataSecondaryInstance; +import org.biomoby.shared.MobyDataSetInstance; +import org.biomoby.shared.MobyDataSimpleInstance; +import org.biomoby.shared.MobyException; +import org.biomoby.shared.MobyPrefixResolver; +import org.biomoby.shared.MobyService; +import org.biomoby.shared.NoSuccessException; +import org.biomoby.shared.SOAPException; +import org.w3c.dom.CDATASection; +import org.w3c.dom.Document; +import org.w3c.dom.Element; +import org.w3c.dom.Node; import org.w3c.dom.NodeList; -import org.apache.axis.message.MessageElement; -import java.io.PrintStream; -import java.io.StringBufferInputStream; +import org.w3c.dom.Text; /** * This class handles the WSDL transaction to request a response =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/FileCache.java,v retrieving revision 1.4 retrieving revision 1.5 diff -u -r1.4 -r1.5 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/FileCache.java 2004/10/18 14:35:06 1.4 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/FileCache.java 2005/04/07 16:37:02 1.5 @@ -9,8 +9,14 @@ // TBD: this may go later to the general tools package org.biomoby.client; -import java.util.*; -import java.io.*; +import java.io.BufferedOutputStream; +import java.io.File; +import java.io.FileOutputStream; +import java.io.IOException; +import java.util.Arrays; +import java.util.Hashtable; +import java.util.Iterator; +import java.util.Properties; /** =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/CentralDigestImpl.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/CentralDigestImpl.java 2004/10/18 14:35:06 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/CentralDigestImpl.java 2005/04/07 16:37:02 1.2 @@ -6,11 +6,17 @@ package org.biomoby.client; -import org.biomoby.shared.*; -import embl.ebi.utils.*; +import java.util.Iterator; +import java.util.Map; +import java.util.Vector; + +import org.biomoby.shared.CentralDigest; +import org.biomoby.shared.MobyDataType; +import org.biomoby.shared.MobyException; +import org.biomoby.shared.MobyService; +import org.biomoby.shared.MobyServiceType; -import java.util.*; -import java.io.*; +import embl.ebi.utils.DGUtils; // import java.net.*; /** =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ServicesEdge.java,v retrieving revision 1.4 retrieving revision 1.5 diff -u -r1.4 -r1.5 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ServicesEdge.java 2005/03/03 23:18:35 1.4 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ServicesEdge.java 2005/04/07 16:37:02 1.5 @@ -6,11 +6,7 @@ package org.biomoby.client; -import org.biomoby.shared.*; - -import java.net.*; -import java.util.*; -import java.io.*; +import org.biomoby.shared.MobyService; /** * An instance of this class is a container for a pair of Moby service =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/SimpleCache.java,v retrieving revision 1.2 retrieving revision 1.3 diff -u -r1.2 -r1.3 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/SimpleCache.java 2004/10/18 14:35:06 1.2 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/SimpleCache.java 2005/04/07 16:37:02 1.3 @@ -9,8 +9,8 @@ // TBD: this may go later to the general tools package org.biomoby.client; -import java.util.*; -import java.io.*; +import java.io.IOException; +import java.util.Properties; /** =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/DataTypeConnector.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/DataTypeConnector.java 2004/10/18 14:35:06 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/DataTypeConnector.java 2005/04/07 16:37:02 1.2 @@ -6,7 +6,8 @@ package org.biomoby.client; -import org.biomoby.shared.*; +import org.biomoby.shared.MobyDataType; +import org.biomoby.shared.Utils; /** * A simple container for a connection between two data types.

=================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/RDF.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/RDF.java 2003/11/08 00:27:24 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/RDF.java 2005/04/07 16:37:02 1.2 @@ -6,12 +6,16 @@ package org.biomoby.client; -import org.biomoby.shared.*; -import edu.mit.lcs.haystack.rdf.*; +import java.util.Properties; -import java.net.*; -import java.util.*; -import java.io.*; +import org.biomoby.shared.MobyService; + +import edu.mit.lcs.haystack.rdf.Literal; +import edu.mit.lcs.haystack.rdf.LocalRDFContainer; +import edu.mit.lcs.haystack.rdf.RDFException; +import edu.mit.lcs.haystack.rdf.Resource; +import edu.mit.lcs.haystack.rdf.Statement; +import edu.mit.lcs.haystack.rdf.Utilities; /** * A utility class that understands how to create =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/GraphsServlet.java,v retrieving revision 1.7 retrieving revision 1.8 diff -u -r1.7 -r1.8 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/GraphsServlet.java 2004/10/18 14:35:06 1.7 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/GraphsServlet.java 2005/04/07 16:37:02 1.8 @@ -8,16 +8,45 @@ package org.biomoby.client; -import org.biomoby.shared.*; - -import embl.ebi.tools.*; -import embl.ebi.utils.*; -import embl.ebi.servlets.*; - -import javax.servlet.*; -import javax.servlet.http.*; -import java.util.*; -import java.io.*; +import java.io.File; +import java.io.FileOutputStream; +import java.io.IOException; +import java.io.InputStream; +import java.io.PrintWriter; +import java.util.Arrays; +import java.util.Date; +import java.util.Enumeration; +import java.util.HashSet; +import java.util.Hashtable; +import java.util.Iterator; +import java.util.Map; +import java.util.Properties; +import java.util.Vector; + +import javax.servlet.ServletContext; +import javax.servlet.ServletException; +import javax.servlet.http.HttpServlet; +import javax.servlet.http.HttpServletRequest; +import javax.servlet.http.HttpServletResponse; + +import org.biomoby.shared.CentralAll; +import org.biomoby.shared.MobyDataType; +import org.biomoby.shared.MobyException; +import org.biomoby.shared.MobyNamespace; +import org.biomoby.shared.MobyPrimaryDataSimple; +import org.biomoby.shared.MobyService; +import org.biomoby.shared.MobyServiceType; +import org.biomoby.shared.Utils; + +import embl.ebi.servlets.Html; +import embl.ebi.servlets.HtmlConstants; +import embl.ebi.tools.CatchOutputDefaultImpl; +import embl.ebi.tools.Executor; +import embl.ebi.tools.Printf; +import embl.ebi.tools.Sorter; +import embl.ebi.utils.GException; +import embl.ebi.utils.StringUtils; +import embl.ebi.utils.UUtils; /** =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/FilterServices.java,v retrieving revision 1.4 retrieving revision 1.5 diff -u -r1.4 -r1.5 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/FilterServices.java 2004/11/12 23:07:08 1.4 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/FilterServices.java 2005/04/07 16:37:02 1.5 @@ -6,8 +6,13 @@ package org.biomoby.client; -import org.biomoby.shared.*; -import java.util.*; +import java.util.Enumeration; +import java.util.HashSet; +import java.util.Hashtable; +import java.util.Iterator; +import java.util.Vector; + +import org.biomoby.shared.MobyService; /** * This class allows to filter a set of services using some criteria. =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ServletFileCache.java,v retrieving revision 1.3 retrieving revision 1.4 diff -u -r1.3 -r1.4 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ServletFileCache.java 2004/10/18 14:35:06 1.3 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ServletFileCache.java 2005/04/07 16:37:02 1.4 @@ -9,9 +9,7 @@ // TBD: this may go later to the general tools package org.biomoby.client; -import javax.servlet.*; -import java.util.*; -import java.io.*; +import javax.servlet.ServletContext; /** * A simple cache implementation meant to be used in a servlet =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/DataServiceEdge.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/DataServiceEdge.java 2004/10/18 14:35:06 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/DataServiceEdge.java 2005/04/07 16:37:02 1.2 @@ -6,11 +6,9 @@ package org.biomoby.client; -import org.biomoby.shared.*; - -import java.net.*; -import java.util.*; -import java.io.*; +import org.biomoby.shared.MobyDataType; +import org.biomoby.shared.MobyService; +import org.biomoby.shared.Utils; /** * An instance of this class is a container for a pair of a data type =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/Taverna.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/Taverna.java 2004/10/18 14:35:06 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/Taverna.java 2005/04/07 16:37:02 1.2 @@ -6,13 +6,21 @@ package org.biomoby.client; -import org.biomoby.shared.*; -import org.embl.ebi.escience.scufl.*; -import org.embl.ebi.escience.scufl.view.*; -import org.embl.ebi.escience.scuflworkers.biomoby.*; -import org.embl.ebi.escience.scuflworkers.java.*; -import org.embl.ebi.escience.scuflworkers.stringconstant.*; -import java.util.*; +import java.util.Hashtable; +import java.util.Properties; + +import org.biomoby.shared.MobyException; +import org.biomoby.shared.MobyService; +import org.biomoby.shared.Utils; +import org.embl.ebi.escience.scufl.DataConstraint; +import org.embl.ebi.escience.scufl.InputPort; +import org.embl.ebi.escience.scufl.OutputPort; +import org.embl.ebi.escience.scufl.Processor; +import org.embl.ebi.escience.scufl.ScuflModel; +import org.embl.ebi.escience.scufl.view.XScuflView; +import org.embl.ebi.escience.scuflworkers.biomoby.BiomobyProcessor; +import org.embl.ebi.escience.scuflworkers.java.LocalServiceProcessor; +import org.embl.ebi.escience.scuflworkers.stringconstant.StringConstantProcessor; /** * A utility class that understands how to create workflow definitions =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/CentralDigestCachedImpl.java,v retrieving revision 1.2 retrieving revision 1.3 diff -u -r1.2 -r1.3 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/CentralDigestCachedImpl.java 2004/11/14 16:12:50 1.2 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/CentralDigestCachedImpl.java 2005/04/07 16:37:02 1.3 @@ -6,11 +6,22 @@ package org.biomoby.client; -import org.biomoby.shared.*; -import embl.ebi.utils.*; - -import java.util.*; -import java.io.*; +import java.io.BufferedOutputStream; +import java.io.BufferedReader; +import java.io.File; +import java.io.FileOutputStream; +import java.io.FileReader; +import java.io.IOException; +import java.io.PrintWriter; +import java.util.Iterator; +import java.util.Map; +import java.util.Vector; + +import org.biomoby.shared.CentralAll; +import org.biomoby.shared.MobyDataType; +import org.biomoby.shared.MobyException; +import org.biomoby.shared.MobyService; +import org.biomoby.shared.NoSuccessException; /** * An implementation of {@link org.biomoby.shared.CentralAll}, =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ServiceConnections.java,v retrieving revision 1.3 retrieving revision 1.4 diff -u -r1.3 -r1.4 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ServiceConnections.java 2004/10/18 14:35:06 1.3 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ServiceConnections.java 2005/04/07 16:37:02 1.4 @@ -6,8 +6,16 @@ package org.biomoby.client; -import org.biomoby.shared.*; -import java.util.*; +import java.util.Hashtable; +import java.util.Vector; + +import org.biomoby.shared.MobyData; +import org.biomoby.shared.MobyDataType; +import org.biomoby.shared.MobyNamespace; +import org.biomoby.shared.MobyPrimaryDataSet; +import org.biomoby.shared.MobyPrimaryDataSimple; +import org.biomoby.shared.MobyService; +import org.biomoby.shared.Utils; /** * This class contains knowledge (an algorithm) how individual Moby =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/SimpleFileCache.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/SimpleFileCache.java 2004/10/18 14:35:06 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/SimpleFileCache.java 2005/04/07 16:37:02 1.2 @@ -7,8 +7,7 @@ // TBD: this may go later to the general tools package org.biomoby.client; -import java.util.*; -import java.io.*; +import java.io.IOException; /** From kawas at pub.open-bio.org Thu Apr 7 12:37:03 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 12:19:37 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071637.j37Gb3CU001891@pub.open-bio.org> kawas Thu Apr 7 12:37:02 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared In directory pub.open-bio.org:/tmp/cvs-serv1723/org/biomoby/shared Modified Files: MobyDataSimpleInstance.java MobyData.java MobyDataDateTime.java MobySecondaryData.java MobyDataFloat.java MobyRelationship.java MobyService.java MobyDataType.java MobyPrimaryDataSimple.java MobyDataString.java MobyNativeService.java Central.java MobyPrimaryDataSet.java MobyDataInt.java Utils.java Added Files: MobyObjectDecompositionImpl.java MobyObjectDecomposition.java Log Message: Okay, i am trying again ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/shared MobyObjectDecompositionImpl.java,NONE,1.1 MobyObjectDecomposition.java,NONE,1.1 MobyDataSimpleInstance.java,1.6,1.7 MobyData.java,1.2,1.3 MobyDataDateTime.java,1.1,1.2 MobySecondaryData.java,1.1,1.2 MobyDataFloat.java,1.3,1.4 MobyRelationship.java,1.3,1.4 MobyService.java,1.4,1.5 MobyDataType.java,1.5,1.6 MobyPrimaryDataSimple.java,1.3,1.4 MobyDataString.java,1.2,1.3 MobyNativeService.java,1.1,1.2 Central.java,1.8,1.9 MobyPrimaryDataSet.java,1.1,1.2 MobyDataInt.java,1.2,1.3 Utils.java,1.4,1.5 =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataSimpleInstance.java,v retrieving revision 1.6 retrieving revision 1.7 diff -u -r1.6 -r1.7 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataSimpleInstance.java 2005/04/05 15:14:53 1.6 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataSimpleInstance.java 2005/04/07 16:37:02 1.7 @@ -1,17 +1,18 @@ package org.biomoby.shared; -import org.w3c.dom.Element; -import org.w3c.dom.NodeList; -import org.w3c.dom.Node; - import java.io.StringWriter; -//JAXP 1.1 -import javax.xml.parsers.*; -import javax.xml.transform.*; -import javax.xml.transform.stream.*; -import javax.xml.transform.dom.*; +import javax.xml.transform.OutputKeys; +import javax.xml.transform.Transformer; +import javax.xml.transform.TransformerException; +import javax.xml.transform.TransformerFactory; +import javax.xml.transform.dom.DOMSource; +import javax.xml.transform.stream.StreamResult; + +import org.w3c.dom.Element; +import org.w3c.dom.Node; +import org.w3c.dom.NodeList; /** * A class representing a MOBY object that has been instantiated. =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyData.java,v retrieving revision 1.2 retrieving revision 1.3 diff -u -r1.2 -r1.3 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyData.java 2004/10/18 14:35:06 1.2 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyData.java 2005/04/07 16:37:02 1.3 @@ -6,7 +6,6 @@ package org.biomoby.shared; -import java.util.*; /** =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataDateTime.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataDateTime.java 2005/02/09 17:17:25 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataDateTime.java 2005/04/07 16:37:02 1.2 @@ -4,6 +4,7 @@ import java.text.SimpleDateFormat; import java.util.Calendar; import java.util.GregorianCalendar; +import java.util.IllegalFormatException; import java.util.NoSuchElementException; import java.util.StringTokenizer; import java.util.TimeZone; =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobySecondaryData.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobySecondaryData.java 2003/09/24 14:33:37 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobySecondaryData.java 2005/04/07 16:37:02 1.2 @@ -6,8 +6,11 @@ package org.biomoby.shared; -import org.w3c.dom.*; -import java.util.*; +import java.util.Enumeration; +import java.util.Vector; + +import org.w3c.dom.Element; +import org.w3c.dom.NodeList; /** * A container representing a way how various secondary data types =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataFloat.java,v retrieving revision 1.3 retrieving revision 1.4 diff -u -r1.3 -r1.4 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataFloat.java 2005/04/05 15:13:27 1.3 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataFloat.java 2005/04/07 16:37:02 1.4 @@ -1,6 +1,7 @@ package org.biomoby.shared; -import java.math.*; +import java.math.BigDecimal; +import java.math.BigInteger; /** * A class representing a MOBY Float primitive. Note that the =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyRelationship.java,v retrieving revision 1.3 retrieving revision 1.4 diff -u -r1.3 -r1.4 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyRelationship.java 2004/10/18 14:35:06 1.3 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyRelationship.java 2005/04/07 16:37:02 1.4 @@ -7,7 +7,6 @@ package org.biomoby.shared; -import java.util.*; /** =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyService.java,v retrieving revision 1.4 retrieving revision 1.5 diff -u -r1.4 -r1.5 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyService.java 2004/10/18 14:35:06 1.4 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyService.java 2005/04/07 16:37:02 1.5 @@ -7,7 +7,8 @@ package org.biomoby.shared; -import java.util.*; +import java.util.Enumeration; +import java.util.Vector; /** * A container representing a service. But do not be too excited - =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataType.java,v retrieving revision 1.5 retrieving revision 1.6 diff -u -r1.5 -r1.6 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataType.java 2004/10/18 14:35:06 1.5 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataType.java 2005/04/07 16:37:02 1.6 @@ -7,7 +7,6 @@ package org.biomoby.shared; -import java.util.*; /** =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyPrimaryDataSimple.java,v retrieving revision 1.3 retrieving revision 1.4 diff -u -r1.3 -r1.4 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyPrimaryDataSimple.java 2004/10/18 14:35:06 1.3 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyPrimaryDataSimple.java 2005/04/07 16:37:02 1.4 @@ -6,8 +6,11 @@ package org.biomoby.shared; -import org.w3c.dom.*; -import java.util.*; +import java.util.Enumeration; +import java.util.Vector; + +import org.w3c.dom.Element; +import org.w3c.dom.NodeList; /** * A container representing a way how various primary data types =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataString.java,v retrieving revision 1.2 retrieving revision 1.3 diff -u -r1.2 -r1.3 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataString.java 2005/02/09 17:20:38 1.2 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataString.java 2005/04/07 16:37:02 1.3 @@ -1,6 +1,5 @@ package org.biomoby.shared; -import java.math.*; /** * A class representing a MOBY String primitive. =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyNativeService.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyNativeService.java 2004/03/09 00:20:13 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyNativeService.java 2005/04/07 16:37:02 1.2 @@ -7,9 +7,6 @@ package org.biomoby.shared; -import java.util.*; -import java.io.*; -import java.net.*; /** * A client-side interface to a Moby-compliant service. =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/Central.java,v retrieving revision 1.8 retrieving revision 1.9 diff -u -r1.8 -r1.9 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/Central.java 2004/10/18 14:35:06 1.8 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/Central.java 2005/04/07 16:37:02 1.9 @@ -7,9 +7,7 @@ package org.biomoby.shared; -import java.util.*; -import java.io.*; -import java.net.*; +import java.util.Map; /** * An interface to the Moby Registry.

=================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyPrimaryDataSet.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyPrimaryDataSet.java 2003/09/24 14:33:37 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyPrimaryDataSet.java 2005/04/07 16:37:02 1.2 @@ -6,8 +6,11 @@ package org.biomoby.shared; -import org.w3c.dom.*; -import java.util.*; +import java.util.Enumeration; +import java.util.Vector; + +import org.w3c.dom.Element; +import org.w3c.dom.NodeList; /** * A container representing a way how a named collection of various =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataInt.java,v retrieving revision 1.2 retrieving revision 1.3 diff -u -r1.2 -r1.3 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataInt.java 2005/02/09 17:20:38 1.2 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataInt.java 2005/04/07 16:37:02 1.3 @@ -1,6 +1,7 @@ package org.biomoby.shared; -import java.math.*; +import java.math.BigDecimal; +import java.math.BigInteger; /** * A class representing a MOBY Integer primitive. Note that the =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/Utils.java,v retrieving revision 1.4 retrieving revision 1.5 diff -u -r1.4 -r1.5 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/Utils.java 2004/04/02 16:40:23 1.4 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/Utils.java 2005/04/07 16:37:02 1.5 @@ -7,9 +7,9 @@ package org.biomoby.shared; -import org.apache.axis.AxisFault; import javax.xml.namespace.QName; -import java.io.*; + +import org.apache.axis.AxisFault; /** * This is a set of several utility methods which may be useful for From kawas at pub.open-bio.org Thu Apr 7 11:45:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 12:19:49 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071545.j37FjJJn001098@pub.open-bio.org> kawas Thu Apr 7 11:45:19 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/util In directory pub.open-bio.org:/tmp/cvs-serv690/util Removed Files: ObjectXMLWriter.java REGEXP.java TreeLoaderThread.java Log Message: removing old packages created by eddie and replacing them with newly updated ones. moby-live/Java/src/main/org/biomoby/client/gui/util ObjectXMLWriter.java,1.2,NONE REGEXP.java,1.5,NONE TreeLoaderThread.java,1.3,NONE rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/util/RCS/ObjectXMLWriter.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/util/RCS/REGEXP.java,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/gui/util/RCS/TreeLoaderThread.java,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:17 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 12:28:20 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeH0K001951@pub.open-bio.org> kawas Thu Apr 7 12:40:17 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/rdf Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf added to the repository moby-live/Java/src/main/org/biomoby/client/rdf - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:21 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 12:28:38 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeLZ5002598@pub.open-bio.org> kawas Thu Apr 7 12:40:20 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/registry/definitions/types Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types added to the repository moby-live/Java/src/main/org/biomoby/registry/definitions/types - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:18 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 12:28:39 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeItR002135@pub.open-bio.org> kawas Thu Apr 7 12:40:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:18 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 12:28:47 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeI1K002069@pub.open-bio.org> kawas Thu Apr 7 12:40:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:17 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 12:28:49 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeHxZ001969@pub.open-bio.org> kawas Thu Apr 7 12:40:17 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/builder In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/rdf/builder Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/builder added to the repository moby-live/Java/src/main/org/biomoby/client/rdf/builder - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/builder/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/builder/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/builder/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 13:04:43 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 12:46:57 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071704.j37H4hg0003528@pub.open-bio.org> kawas Thu Apr 7 13:04:43 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/config In directory pub.open-bio.org:/tmp/cvs-serv3507 Added Files: biomoby.properties Log Message: moved this file from the src/main/.../properties package moby-live/Java/src/config biomoby.properties,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 13:07:02 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 12:49:14 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071707.j37H72Im003780@pub.open-bio.org> kawas Thu Apr 7 13:07:02 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/properties In directory pub.open-bio.org:/tmp/cvs-serv3741 Removed Files: biomoby.properties log4j.properties Log Message: moved these files to the src/config folder moby-live/Java/src/main/org/biomoby/registry/properties biomoby.properties,1.1,NONE log4j.properties,1.1,NONE rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/properties/RCS/biomoby.properties,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/properties/RCS/log4j.properties,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:17 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:12:24 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeH8n001989@pub.open-bio.org> kawas Thu Apr 7 12:40:17 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/graph In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/rdf/graph Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/graph added to the repository moby-live/Java/src/main/org/biomoby/client/rdf/graph - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/graph/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/graph/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/graph/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:20 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:12:30 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeKqm002511@pub.open-bio.org> kawas Thu Apr 7 12:40:20 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/servlet/lsid Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:20 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:12:41 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeK6i002535@pub.open-bio.org> kawas Thu Apr 7 12:40:20 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/servlet/lsid/authority Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:20 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:12:42 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeKm9002493@pub.open-bio.org> kawas Thu Apr 7 12:40:20 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/servlet/jresources Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:17 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:19:52 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeH8k001933@pub.open-bio.org> kawas Thu Apr 7 12:40:17 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/exceptions In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/exceptions Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/exceptions added to the repository moby-live/Java/src/main/org/biomoby/client/exceptions - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/exceptions/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/exceptions/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/exceptions/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:18 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:19:53 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeIc9002007@pub.open-bio.org> kawas Thu Apr 7 12:40:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/vocabulary In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/rdf/vocabulary Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/vocabulary added to the repository moby-live/Java/src/main/org/biomoby/client/rdf/vocabulary - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/vocabulary/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/vocabulary/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/vocabulary/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:18 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:05 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeISq002025@pub.open-bio.org> kawas Thu Apr 7 12:40:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui added to the repository moby-live/Java/src/main/org/biomoby/client/ui - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:18 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:06 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeI4X002043@pub.open-bio.org> kawas Thu Apr 7 12:40:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/commandline In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/commandline Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/commandline added to the repository moby-live/Java/src/main/org/biomoby/client/ui/commandline - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/commandline/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/commandline/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/commandline/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:18 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:06 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeINS002117@pub.open-bio.org> kawas Thu Apr 7 12:40:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets/img Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:18 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:07 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeIZv002090@pub.open-bio.org> kawas Thu Apr 7 12:40:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:08 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeJ15002176@pub.open-bio.org> kawas Thu Apr 7 12:40:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/general In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/general Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/general added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/general - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/general/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/general/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/general/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:08 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeJ9V002156@pub.open-bio.org> kawas Thu Apr 7 12:40:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/development In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/development Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/development added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/development - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/development/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/development/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/development/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:09 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeJhf002198@pub.open-bio.org> kawas Thu Apr 7 12:40:19 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/media In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/media Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/media added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/media - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/media/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/media/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/media/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:10 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeJw3002220@pub.open-bio.org> kawas Thu Apr 7 12:40:19 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/navigation In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/navigation Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/navigation added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/navigation - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/navigation/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/navigation/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/navigation/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:11 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeJaJ002238@pub.open-bio.org> kawas Thu Apr 7 12:40:19 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/table In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/table Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/table added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/table - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/table/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/table/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/table/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:12 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeJFq002262@pub.open-bio.org> kawas Thu Apr 7 12:40:19 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/text In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/text Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/text added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/text - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/text/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/text/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/text/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:17 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeJvh002281@pub.open-bio.org> kawas Thu Apr 7 12:40:19 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets/objectCreationTool Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:18 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeJmi002304@pub.open-bio.org> kawas Thu Apr 7 12:40:19 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:18 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeJV6002325@pub.open-bio.org> kawas Thu Apr 7 12:40:19 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceTypeCreationTool In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets/serviceTypeCreationTool Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceTypeCreationTool added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceTypeCreationTool - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceTypeCreationTool/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceTypeCreationTool/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceTypeCreationTool/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:19 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:19 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeJgp002345@pub.open-bio.org> kawas Thu Apr 7 12:40:19 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/shared In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets/shared Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/shared added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/shared - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/shared/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/shared/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/shared/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:20 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:20 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeKPs002366@pub.open-bio.org> kawas Thu Apr 7 12:40:19 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/util In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/applets/util Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/util added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/util - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/util/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/util/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/util/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:20 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:21 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeKTr002387@pub.open-bio.org> kawas Thu Apr 7 12:40:19 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/plugins In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/plugins Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/plugins added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/plugins - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/plugins/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/plugins/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/plugins/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:20 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:22 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeKWY002409@pub.open-bio.org> kawas Thu Apr 7 12:40:20 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/servlet Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:20 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:23 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeKBU002451@pub.open-bio.org> kawas Thu Apr 7 12:40:20 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/forms In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/servlet/forms Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/forms added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/forms - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/forms/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/forms/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/forms/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:20 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:24 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeKS3002427@pub.open-bio.org> kawas Thu Apr 7 12:40:20 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/errorpages In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/servlet/errorpages Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/errorpages added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/errorpages - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/errorpages/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/errorpages/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/errorpages/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:20 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:25 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeKGl002469@pub.open-bio.org> kawas Thu Apr 7 12:40:20 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jTypes In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/servlet/jTypes Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jTypes added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jTypes - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jTypes/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jTypes/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jTypes/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:20 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:26 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeKdx002553@pub.open-bio.org> kawas Thu Apr 7 12:40:20 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/utilities In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/client/ui/graphical/servlet/utilities Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/utilities added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/utilities - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/utilities/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/utilities/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/utilities/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:21 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:27 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeKMd002576@pub.open-bio.org> kawas Thu Apr 7 12:40:20 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/registry/definitions Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions added to the repository moby-live/Java/src/main/org/biomoby/registry/definitions - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:21 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:28 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeLML002620@pub.open-bio.org> kawas Thu Apr 7 12:40:21 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/properties In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/registry/properties Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/properties added to the repository moby-live/Java/src/main/org/biomoby/registry/properties - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/properties/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/properties/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/properties/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:21 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:29 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeLP1002639@pub.open-bio.org> kawas Thu Apr 7 12:40:21 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/shared/mobyxml Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml added to the repository moby-live/Java/src/main/org/biomoby/shared/mobyxml - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:21 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:30 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeLXY002661@pub.open-bio.org> kawas Thu Apr 7 12:40:21 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/shared/mobyxml/w3c Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c added to the repository moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:40:21 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:31 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071640.j37GeLMG002684@pub.open-bio.org> kawas Thu Apr 7 12:40:21 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c/dom3 In directory pub.open-bio.org:/tmp/cvs-serv1909/org/biomoby/shared/mobyxml/w3c/dom3 Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c/dom3 added to the repository moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c/dom3 - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c/dom3/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c/dom3/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c/dom3/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:42:26 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:32 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgQjU002731@pub.open-bio.org> kawas Thu Apr 7 12:42:26 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/development In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/development Added Files: J2EEApplication24.gif ApplicationDeploy16.gif JarAdd24.gif Jar24.gif Host24.gif Applet24.gif EnterpriseJavaBean24.gif War24.gif Bean24.gif J2EEApplicationClient16.gif J2EEServer16.gif WebComponent16.gif Server24.gif J2EEServer24.gif Application16.gif EnterpriseJavaBean16.gif Host16.gif EnterpriseJavaBeanJar24.gif War16.gif ApplicationDeploy24.gif WarAdd16.gif Server16.gif J2EEApplicationClientAdd16.gif J2EEApplicationClientAdd24.gif JarAdd16.gif WebComponentAdd24.gif BeanAdd16.gif J2EEApplication16.gif Application24.gif WebComponent24.gif WebComponentAdd16.gif WarAdd24.gif Jar16.gif Bean16.gif J2EEApplicationClient24.gif Applet16.gif EnterpriseJavaBeanJar16.gif BeanAdd24.gif Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/development J2EEApplication24.gif,NONE,1.1 ApplicationDeploy16.gif,NONE,1.1 JarAdd24.gif,NONE,1.1 Jar24.gif,NONE,1.1 Host24.gif,NONE,1.1 Applet24.gif,NONE,1.1 EnterpriseJavaBean24.gif,NONE,1.1 War24.gif,NONE,1.1 Bean24.gif,NONE,1.1 J2EEApplicationClient16.gif,NONE,1.1 J2EEServer16.gif,NONE,1.1 WebComponent16.gif,NONE,1.1 Server24.gif,NONE,1.1 J2EEServer24.gif,NONE,1.1 Application16.gif,NONE,1.1 EnterpriseJavaBean16.gif,NONE,1.1 Host16.gif,NONE,1.1 EnterpriseJavaBeanJar24.gif,NONE,1.1 War16.gif,NONE,1.1 ApplicationDeploy24.gif,NONE,1.1 WarAdd16.gif,NONE,1.1 Server16.gif,NONE,1.1 J2EEApplicationClientAdd16.gif,NONE,1.1 J2EEApplicationClientAdd24.gif,NONE,1.1 JarAdd16.gif,NONE,1.1 WebComponentAdd24.gif,NONE,1.1 BeanAdd16.gif,NONE,1.1 J2EEApplication16.gif,NONE,1.1 Application24.gif,NONE,1.1 WebComponent24.gif,NONE,1.1 WebComponentAdd16.gif,NONE,1.1 WarAdd24.gif,NONE,1.1 Jar16.gif,NONE,1.1 ! Bean16.gif,NONE,1.1 J2EEApplicationClient24.gif,NONE,1.1 Applet16.gif,NONE,1.1 EnterpriseJavaBeanJar16.gif,NONE,1.1 BeanAdd24.gif,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:26 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:33 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgQUX002749@pub.open-bio.org> kawas Thu Apr 7 12:42:26 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/general In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/general Added Files: SendMail24.gif History16.gif Information16.gif Edit24.gif FindAgain24.gif Import16.gif Properties24.gif ZoomIn24.gif Export16.gif AlignJustifyHorizontal24.gif AlignJustifyVertical16.gif Zoom16.gif AlignTop16.gif Search24.gif PrintPreview24.gif Delete16.gif ComposeMail24.gif Find16.gif Save16.gif AlignBottom16.gif AlignCenter24.gif Cut24.gif AlignRight24.gif ComposeMail16.gif Save24.gif SendMail16.gif ContextualHelp16.gif AlignJustifyVertical24.gif Open24.gif Edit16.gif Remove16.gif New16.gif Copy24.gif Preferences16.gif Undo24.gif Print16.gif ZoomOut16.gif Open16.gif History24.gif Preferences24.gif Replace24.gif Bookmarks24.gif Find24.gif Zoom24.gif Refresh16.gif AlignRight16.gif ContextualHelp24.gif TipOfTheDay24.gif Refresh24.gif PrintPreview16.gif AlignBottom24.gif SaveAll24.gif Stop16.gif SaveAll16.gif Help16.gif AlignLeft24.gif Help24.gif Undo16.gif Add16.gif Replace16.gif AlignJustifyHorizontal16.gif Export24.gif About24.gif About16.gif Stop24.gif Remove24.gif Delete24.gif Print24.gif FindAgain16.gif SaveAs16.gif PageSetup24.gif TipOfTheDay16.gif Cut16.gif Import24.gif AlignCenter16.gif PageSetup16.gif Paste24.gif ZoomIn16.gif Redo16.gif Search16.gif Properties16.gif New24.gif Information24.gif Paste16.gif Add24.gif SaveAs24.gif Copy16.gif Bookmarks16.gif AlignLeft16.gif AlignTop24.gif ZoomOut24.gif Redo24.gif Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/general SendMail24.gif,NONE,1.1 History16.gif,NONE,1.1 Information16.gif,NONE,1.1 Edit24.gif,NONE,1.1 FindAgain24.gif,NONE,1.1 Import16.gif,NONE,1.1 Properties24.gif,NONE,1.1 ZoomIn24.gif,NONE,1.1 Export16.gif,NONE,1.1 AlignJustifyHorizontal24.gif,NONE,1.1 AlignJustifyVertical16.gif,NONE,1.1 Zoom16.gif,NONE,1.1 AlignTop16.gif,NONE,1.1 Search24.gif,NONE,1.1 PrintPreview24.gif,NONE,1.1 Delete16.gif,NONE,1.1 ComposeMail24.gif,NONE,1.1 Find16.gif,NONE,1.1 Save16.gif,NONE,1.1 AlignBottom16.gif,NONE,1.1 AlignCenter24.gif,NONE,1.1 Cut24.gif,NONE,1.1 AlignRight24.gif,NONE,1.1 ComposeMail16.gif,NONE,1.1 Save24.gif,NONE,1.1 SendMail16.gif,NONE,1.1 ContextualHelp16.gif,NONE,1.1 AlignJustifyVertical24.gif,NONE,1.1 Open24.gif,NONE,1.1 Edit16.gif,NONE,1.1 Remove16.gif,NONE,1.1 New16.gif,NONE,1.1 Copy24.gif,NONE,1.1 Preferences16.gif,NONE,1.1 Undo24.gif,NONE,1.1 Print16.gif,NONE,1.1 ZoomOut16.gif,NONE! ,1.1 Open16.gif,NONE,1.1 History24.gif,NONE,1.1 Preferences24.gif,NONE,1.1 Replace24.gif,NONE,1.1 Bookmarks24.gif,NONE,1.1 Find24.gif,NONE,1.1 Zoom24.gif,NONE,1.1 Refresh16.gif,NONE,1.1 AlignRight16.gif,NONE,1.1 ContextualHelp24.gif,NONE,1.1 TipOfTheDay24.gif,NONE,1.1 Refresh24.gif,NONE,1.1 PrintPreview16.gif,NONE,1.1 AlignBottom24.gif,NONE,1.1 SaveAll24.gif,NONE,1.1 Stop16.gif,NONE,1.1 SaveAll16.gif,NONE,1.1 Help16.gif,NONE,1.1 AlignLeft24.gif,NONE,1.1 Help24.gif,NONE,1.1 Undo16.gif,NONE,1.1 Add16.gif,NONE,1.1 Replace16.gif,NONE,1.1 AlignJustifyHorizontal16.gif,NONE,1.1 Export24.gif,NONE,1.1 About24.gif,NONE,1.1 About16.gif,NONE,1.1 Stop24.gif,NONE,1.1 Remove24.gif,NONE,1.1 Delete24.gif,NONE,1.1 Print24.gif,NONE,1.1 FindAgain16.gif,NONE,1.1 SaveAs16.gif,NONE,1.1 PageSetup24.gif,NONE,1.1 TipOfTheDay16.gif,NONE,1.1 Cut16.gif,NONE,1.1 Import24.gif,NONE,1.1 AlignCenter16.gif,NONE,1.1 PageSetup16.gif,NONE,1.1 Paste24.gif,NONE,1.1 ZoomIn16.gif,NONE,1.1 Redo16.gif,NONE,1.1 Search1! 6.gif,NONE,1.1 Properties16.gif,NONE,1.1 New24.gif,NONE,1.1 I! nformation24.gif,NONE,1.1 Paste16.gif,NONE,1.1 Add24.gif,NONE,1.1 SaveAs24.gif,NONE,1.1 Copy16.gif,NONE,1.1 Bookmarks16.gif,NONE,1.1 AlignLeft16.gif,NONE,1.1 AlignTop24.gif,NONE,1.1 ZoomOut24.gif,NONE,1.1 Redo24.gif,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:26 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:40 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgQ0r002764@pub.open-bio.org> kawas Thu Apr 7 12:42:26 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/text In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/text Added Files: AlignCenter24.gif AlignCenter16.gif AlignJustify24.gif Underline16.gif Italic24.gif Normal16.gif Bold24.gif Underline24.gif AlignRight16.gif AlignJustify16.gif AlignRight24.gif AlignLeft24.gif AlignLeft16.gif Normal24.gif Italic16.gif Bold16.gif Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/text AlignCenter24.gif,NONE,1.1 AlignCenter16.gif,NONE,1.1 AlignJustify24.gif,NONE,1.1 Underline16.gif,NONE,1.1 Italic24.gif,NONE,1.1 Normal16.gif,NONE,1.1 Bold24.gif,NONE,1.1 Underline24.gif,NONE,1.1 AlignRight16.gif,NONE,1.1 AlignJustify16.gif,NONE,1.1 AlignRight24.gif,NONE,1.1 AlignLeft24.gif,NONE,1.1 AlignLeft16.gif,NONE,1.1 Normal24.gif,NONE,1.1 Italic16.gif,NONE,1.1 Bold16.gif,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:26 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:41 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgQTx002780@pub.open-bio.org> kawas Thu Apr 7 12:42:26 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/errorpages In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/servlet/errorpages Added Files: Error404.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/errorpages Error404.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:26 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:42 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgQI7002814@pub.open-bio.org> kawas Thu Apr 7 12:42:26 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/servlet/lsid/authority Added Files: LSIDAuthorityData.java LSIDDataLookup.java web.xml default-services.xml MobyAuthority.java LSIDAuthorityMetaData.java Test.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/lsid/authority LSIDAuthorityData.java,NONE,1.1 LSIDDataLookup.java,NONE,1.1 web.xml,NONE,1.1 default-services.xml,NONE,1.1 MobyAuthority.java,NONE,1.1 LSIDAuthorityMetaData.java,NONE,1.1 Test.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:26 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:43 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgQ8g002795@pub.open-bio.org> kawas Thu Apr 7 12:42:26 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/applets Added Files: package.html Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets package.html,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:26 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:44 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgQF5002830@pub.open-bio.org> kawas Thu Apr 7 12:42:26 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/applets/objectCreationTool Added Files: SubmissionWindow.java TreeMouseListener.java ObjectCreationTool.java MobyPlainText.java Pair.java retrieveObjectXML.cgi MobyUtilities.java PopUpWindow.java TreeWindow.java MobyXML.java Registration.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool SubmissionWindow.java,NONE,1.1 TreeMouseListener.java,NONE,1.1 ObjectCreationTool.java,NONE,1.1 MobyPlainText.java,NONE,1.1 Pair.java,NONE,1.1 retrieveObjectXML.cgi,NONE,1.1 MobyUtilities.java,NONE,1.1 PopUpWindow.java,NONE,1.1 TreeWindow.java,NONE,1.1 MobyXML.java,NONE,1.1 Registration.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:27 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:45 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgRcv002882@pub.open-bio.org> kawas Thu Apr 7 12:42:27 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool Added Files: MobyUtilities.java MobyCollection.java MobyInputOutputData.java ServiceActionListener.java README TreeListener.java Service.java HelpActionListener.java ServiceCreationTool.java ServiceTypeTree.java InputOutputFocusListener.java ServiceInstancePanelFactory.java InputOutputActionListener.java NamespaceListener.java Pair.java ButtonBeautifier.java NamespaceTree.java ServiceFocusListener.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool MobyUtilities.java,NONE,1.1 MobyCollection.java,NONE,1.1 MobyInputOutputData.java,NONE,1.1 ServiceActionListener.java,NONE,1.1 README,NONE,1.1 TreeListener.java,NONE,1.1 Service.java,NONE,1.1 HelpActionListener.java,NONE,1.1 ServiceCreationTool.java,NONE,1.1 ServiceTypeTree.java,NONE,1.1 InputOutputFocusListener.java,NONE,1.1 ServiceInstancePanelFactory.java,NONE,1.1 InputOutputActionListener.java,NONE,1.1 NamespaceListener.java,NONE,1.1 Pair.java,NONE,1.1 ButtonBeautifier.java,NONE,1.1 NamespaceTree.java,NONE,1.1 ServiceFocusListener.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:27 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:46 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgRHW002850@pub.open-bio.org> kawas Thu Apr 7 12:42:26 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/table In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/table Added Files: ColumnInsertBefore24.gif RowDelete24.gif ColumnInsertAfter16.gif ColumnDelete16.gif ColumnDelete24.gif ColumnInsertBefore16.gif RowInsertBefore24.gif RowInsertAfter16.gif RowInsertAfter24.gif RowDelete16.gif ColumnInsertAfter24.gif RowInsertBefore16.gif Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/table ColumnInsertBefore24.gif,NONE,1.1 RowDelete24.gif,NONE,1.1 ColumnInsertAfter16.gif,NONE,1.1 ColumnDelete16.gif,NONE,1.1 ColumnDelete24.gif,NONE,1.1 ColumnInsertBefore16.gif,NONE,1.1 RowInsertBefore24.gif,NONE,1.1 RowInsertAfter16.gif,NONE,1.1 RowInsertAfter24.gif,NONE,1.1 RowDelete16.gif,NONE,1.1 ColumnInsertAfter24.gif,NONE,1.1 RowInsertBefore16.gif,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:27 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:47 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgRcC002867@pub.open-bio.org> kawas Thu Apr 7 12:42:26 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/properties In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/registry/properties Added Files: log4j.properties MobyCentralConfig.java biomoby.properties package.html MobyProperties.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/registry/properties log4j.properties,NONE,1.1 MobyCentralConfig.java,NONE,1.1 biomoby.properties,NONE,1.1 package.html,NONE,1.1 MobyProperties.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:27 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:48 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgREn002935@pub.open-bio.org> kawas Thu Apr 7 12:42:27 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/util In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/applets/util Added Files: ObjectXMLWriter.java PrimitiveTypes.java REGEXP.java TreeLoaderThread.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/util ObjectXMLWriter.java,NONE,1.1 PrimitiveTypes.java,NONE,1.1 REGEXP.java,NONE,1.1 TreeLoaderThread.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:27 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:49 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgREj002916@pub.open-bio.org> kawas Thu Apr 7 12:42:27 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/applets/img Added Files: MOBY-S.jpeg LICENSE right.gif middle.gif moby_small.gif left.gif moby1.gif bio.gif java.gif moby.gif Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img MOBY-S.jpeg,NONE,1.1 LICENSE,NONE,1.1 right.gif,NONE,1.1 middle.gif,NONE,1.1 moby_small.gif,NONE,1.1 left.gif,NONE,1.1 moby1.gif,NONE,1.1 bio.gif,NONE,1.1 java.gif,NONE,1.1 moby.gif,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:27 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:57 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgRGb002900@pub.open-bio.org> kawas Thu Apr 7 12:42:27 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/media In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/media Added Files: StepBack16.gif StepForward16.gif Stop24.gif Movie24.gif Play24.gif Rewind16.gif Volume16.gif Pause24.gif FastForward16.gif Stop16.gif Volume24.gif StepBack24.gif Movie16.gif Play16.gif Pause16.gif Rewind24.gif FastForward24.gif StepForward24.gif Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/media StepBack16.gif,NONE,1.1 StepForward16.gif,NONE,1.1 Stop24.gif,NONE,1.1 Movie24.gif,NONE,1.1 Play24.gif,NONE,1.1 Rewind16.gif,NONE,1.1 Volume16.gif,NONE,1.1 Pause24.gif,NONE,1.1 FastForward16.gif,NONE,1.1 Stop16.gif,NONE,1.1 Volume24.gif,NONE,1.1 StepBack24.gif,NONE,1.1 Movie16.gif,NONE,1.1 Play16.gif,NONE,1.1 Pause16.gif,NONE,1.1 Rewind24.gif,NONE,1.1 FastForward24.gif,NONE,1.1 StepForward24.gif,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:29 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:58 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgR8W002973@pub.open-bio.org> kawas Thu Apr 7 12:42:27 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/registry/definitions/types Added Files: JServices.java JObjects.java JNamespaces.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/registry/definitions/types JServices.java,NONE,1.1 JObjects.java,NONE,1.1 JNamespaces.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:27 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:20:59 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgRmQ002951@pub.open-bio.org> kawas Thu Apr 7 12:42:27 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/registry/definitions Added Files: package.html Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/registry/definitions package.html,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:29 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:00 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgTLO003074@pub.open-bio.org> kawas Thu Apr 7 12:42:29 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/forms In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/servlet/forms Added Files: updateSignatureURL.cgi GetSignatureRDFResponse.java web.xml GetSignatureRDFForm.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/forms updateSignatureURL.cgi,NONE,1.1 GetSignatureRDFResponse.java,NONE,1.1 web.xml,NONE,1.1 GetSignatureRDFForm.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:29 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:01 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgT7X003005@pub.open-bio.org> kawas Thu Apr 7 12:42:29 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/navigation In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/navigation Added Files: Down24.gif Up24.gif Back24.gif Home16.gif Forward24.gif Forward16.gif Down16.gif Home24.gif Back16.gif Up16.gif Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/img/toolbarButtonGraphics/navigation Down24.gif,NONE,1.1 Up24.gif,NONE,1.1 Back24.gif,NONE,1.1 Home16.gif,NONE,1.1 Forward24.gif,NONE,1.1 Forward16.gif,NONE,1.1 Down16.gif,NONE,1.1 Home24.gif,NONE,1.1 Back16.gif,NONE,1.1 Up16.gif,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:29 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:02 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgTT7003038@pub.open-bio.org> kawas Thu Apr 7 12:42:29 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/vocabulary In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/rdf/vocabulary Added Files: package.html MobyResources.java Predicates.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/rdf/vocabulary package.html,NONE,1.1 MobyResources.java,NONE,1.1 Predicates.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:29 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:03 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgTbo003055@pub.open-bio.org> kawas Thu Apr 7 12:42:29 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/graph In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/rdf/graph Added Files: package.html Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/rdf/graph package.html,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:29 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:04 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgRkn002990@pub.open-bio.org> kawas Thu Apr 7 12:42:27 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/shared In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/applets/shared Added Files: Household.java MobyTree.java Construct.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/shared Household.java,NONE,1.1 MobyTree.java,NONE,1.1 Construct.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:29 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:05 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgT8F003020@pub.open-bio.org> kawas Thu Apr 7 12:42:29 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui Added Files: package.html Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui package.html,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:29 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:06 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgTSv003094@pub.open-bio.org> kawas Thu Apr 7 12:42:29 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/utilities In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/servlet/utilities Added Files: Security.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/utilities Security.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:29 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:13 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgTmn003112@pub.open-bio.org> kawas Thu Apr 7 12:42:29 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceTypeCreationTool In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/applets/serviceTypeCreationTool Added Files: ServiceTypeApplet.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceTypeCreationTool ServiceTypeApplet.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:29 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:14 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgTNO003129@pub.open-bio.org> kawas Thu Apr 7 12:42:29 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/servlet/jresources Added Files: RESOURCE.java web.xml Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jresources RESOURCE.java,NONE,1.1 web.xml,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:30 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:15 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgU2R003167@pub.open-bio.org> kawas Thu Apr 7 12:42:29 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/exceptions In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/exceptions Added Files: package.html Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/exceptions package.html,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:30 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:16 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgU4n003187@pub.open-bio.org> kawas Thu Apr 7 12:42:30 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/commandline In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/commandline Added Files: package.html Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/commandline package.html,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:30 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:18 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgUYM003151@pub.open-bio.org> kawas Thu Apr 7 12:42:29 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf/builder In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/rdf/builder Added Files: RDFConfigure.java package.html ServiceInstanceRDF.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/rdf/builder RDFConfigure.java,NONE,1.1 package.html,NONE,1.1 ServiceInstanceRDF.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:30 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:18 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgUu7003204@pub.open-bio.org> kawas Thu Apr 7 12:42:30 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical Added Files: package.html Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical package.html,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:43:18 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:19 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071643.j37GhIbI003337@pub.open-bio.org> kawas Thu Apr 7 12:43:17 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/swing In directory pub.open-bio.org:/tmp/cvs-serv3313/org/biomoby/client/ui/graphical/swing Log Message: Directory /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/swing added to the repository moby-live/Java/src/main/org/biomoby/client/ui/graphical/swing - New directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/swing/RCS/-,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/swing/RCS/New,v: No such file or directory rcsdiff: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/swing/RCS/directory,v: No such file or directory From kawas at pub.open-bio.org Thu Apr 7 12:42:30 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:20 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgU6I003221@pub.open-bio.org> kawas Thu Apr 7 12:42:30 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/servlet Added Files: package.html Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet package.html,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:30 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:21 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgUWH003241@pub.open-bio.org> kawas Thu Apr 7 12:42:30 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/rdf In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/rdf Added Files: package.html Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/rdf package.html,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:30 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:22 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgU9L003262@pub.open-bio.org> kawas Thu Apr 7 12:42:30 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c/dom3 In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/shared/mobyxml/w3c/dom3 Added Files: MobyObjectClassNSImpl.java MobyObjectClassImpl.java MobyObjectClass.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/shared/mobyxml/w3c/dom3 MobyObjectClassNSImpl.java,NONE,1.1 MobyObjectClassImpl.java,NONE,1.1 MobyObjectClass.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:30 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:24 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgUnu003279@pub.open-bio.org> kawas Thu Apr 7 12:42:30 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jTypes In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/servlet/jTypes Added Files: Types.java Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/jTypes Types.java,NONE,1.1 From kawas at pub.open-bio.org Thu Apr 7 12:42:30 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 13:21:26 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071642.j37GgUtq003298@pub.open-bio.org> kawas Thu Apr 7 12:42:30 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/plugins In directory pub.open-bio.org:/tmp/cvs-serv2710/org/biomoby/client/ui/graphical/plugins Added Files: package.html Log Message: Seriously, this time the commit actually do what i want ... ----------------------- Adding the packages and files: org.biomoby.client.rdf.* org.biomoby.client.ui.* org.biomoby.shared.mobyxml.* org.biomoby.registry.properties.* org.biomoby.registry.definitions.* as well as some empty packages: org.biomoby.client.exceptions I have also removed various import statements in source files that were not needed. Eddie moby-live/Java/src/main/org/biomoby/client/ui/graphical/plugins package.html,NONE,1.1 From senger at pub.open-bio.org Thu Apr 7 15:28:11 2005 From: senger at pub.open-bio.org (Martin Senger) Date: Thu Apr 7 15:11:11 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504071928.j37JSBIU004356@pub.open-bio.org> senger Thu Apr 7 15:28:11 EDT 2005 Update of /home/repository/moby/moby-live/Java In directory pub.open-bio.org:/tmp/cvs-serv4337 Modified Files: build.xml Log Message: moby-live/Java build.xml,1.11,1.12 =================================================================== RCS file: /home/repository/moby/moby-live/Java/build.xml,v retrieving revision 1.11 retrieving revision 1.12 diff -u -r1.11 -r1.12 --- /home/repository/moby/moby-live/Java/build.xml 2005/03/03 23:18:35 1.11 +++ /home/repository/moby/moby-live/Java/build.xml 2005/04/07 19:28:11 1.12 @@ -94,6 +94,8 @@ + + @@ -147,6 +149,9 @@ + + + @@ -205,6 +210,9 @@ + + + From kawas at pub.open-bio.org Thu Apr 7 16:21:18 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 16:04:01 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504072021.j37KLI5k004688@pub.open-bio.org> kawas Thu Apr 7 16:21:18 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/util In directory pub.open-bio.org:/tmp/cvs-serv4663/org/biomoby/client/ui/graphical/applets/util Modified Files: TreeLoaderThread.java Log Message: Removed a variable available only to java 1.5 moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/util TreeLoaderThread.java,1.1,1.2 =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/util/TreeLoaderThread.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/util/TreeLoaderThread.java 2005/04/07 16:42:27 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/util/TreeLoaderThread.java 2005/04/07 20:21:18 1.2 @@ -1,6 +1,4 @@ package org.biomoby.client.ui.graphical.applets.util; -import java.util.concurrent.FutureTask; - import javax.swing.SwingUtilities; /** @@ -115,7 +113,6 @@ Thread t = new Thread(doConstruct); threadVar = new ThreadVar(t); } - public FutureTask f; /** * Start the worker thread. */ From kawas at pub.open-bio.org Thu Apr 7 16:58:59 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 16:41:13 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504072058.j37Kwxib004813@pub.open-bio.org> kawas Thu Apr 7 16:58:59 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types In directory pub.open-bio.org:/tmp/cvs-serv4780/org/biomoby/registry/definitions/types Modified Files: JNamespaces.java JObjects.java JServices.java Log Message: fixed some lexical/etc errors that javac found. moby-live/Java/src/main/org/biomoby/registry/definitions/types JNamespaces.java,1.1,1.2 JObjects.java,1.1,1.2 JServices.java,1.1,1.2 =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types/JNamespaces.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types/JNamespaces.java 2005/04/07 16:42:27 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types/JNamespaces.java 2005/04/07 20:58:59 1.2 @@ -21,7 +21,7 @@ *

email me at edward.kawas@gmail.com */ public final class JNamespaces { - private final String sql = "SELECT namespace_type, description FROM namespace ORDER BY namespace_type asc"; + private static final String sql = "SELECT namespace_type, description FROM namespace ORDER BY namespace_type asc"; private final String newline = System.getProperty("line.separator"); =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types/JObjects.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types/JObjects.java 2005/04/07 16:42:27 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types/JObjects.java 2005/04/07 20:58:59 1.2 @@ -21,7 +21,7 @@ *

email me at edward.kawas@gmail.com */ public final class JObjects { - private final String sql = "SELECT ot1.object_type, rt.relationship_type, ot2.object_type, rt.object2_articlename, ot1.description " + private static final String sql = "SELECT ot1.object_type, rt.relationship_type, ot2.object_type, rt.object2_articlename, ot1.description " + "FROM object as ot1, object_term2term as rt, object as ot2 " + "WHERE ot1.object_id = rt.object1_id and ot2.object_id = rt.object2_id " + "ORDER BY ot1.object_type"; =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types/JServices.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types/JServices.java 2005/04/07 16:42:27 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/registry/definitions/types/JServices.java 2005/04/07 20:58:59 1.2 @@ -22,7 +22,7 @@ *

email me at edward.kawas@gmail.com */ public final class JServices { - private final String sql = "SELECT ot1.service_type, rt.relationship_type, ot2.service_type, ot1.description " + private static final String sql = "SELECT ot1.service_type, rt.relationship_type, ot2.service_type, ot1.description " + "FROM service as ot1, service_term2term as rt, service as ot2 " + "WHERE ot1.service_id = rt.service1_id and ot2.service_id = rt.service2_id order by ot1.service_type"; From kawas at pub.open-bio.org Thu Apr 7 17:00:06 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 16:42:18 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504072100.j37L069a004864@pub.open-bio.org> kawas Thu Apr 7 17:00:06 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared In directory pub.open-bio.org:/tmp/cvs-serv4839/org/biomoby/shared Modified Files: MobyDataFloat.java Log Message: made compareTo return 0 until it is fully implemented. I did this so that the code would compile. Eddie moby-live/Java/src/main/org/biomoby/shared MobyDataFloat.java,1.4,1.5 =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataFloat.java,v retrieving revision 1.4 retrieving revision 1.5 diff -u -r1.4 -r1.5 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataFloat.java 2005/04/07 16:37:02 1.4 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/MobyDataFloat.java 2005/04/07 21:00:06 1.5 @@ -80,7 +80,8 @@ BigDecimal otherNumber = null; if(o instanceof MobyDataSimpleInstance){ - } + } + return 0; } public String toXML(){ From kawas at pub.open-bio.org Thu Apr 7 17:01:14 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 16:43:26 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504072101.j37L1EMc004932@pub.open-bio.org> kawas Thu Apr 7 17:01:13 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool In directory pub.open-bio.org:/tmp/cvs-serv4895/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool Modified Files: InputOutputFocusListener.java ServiceInstancePanelFactory.java ServiceCreationTool.java Service.java Log Message: fixed some lexical/etc errors that javac found. moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool InputOutputFocusListener.java,1.1,1.2 ServiceInstancePanelFactory.java,1.1,1.2 ServiceCreationTool.java,1.1,1.2 Service.java,1.1,1.2 =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/InputOutputFocusListener.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/InputOutputFocusListener.java 2005/04/07 16:42:27 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/InputOutputFocusListener.java 2005/04/07 21:01:13 1.2 @@ -46,27 +46,27 @@ * Method that handles the FocusEvents */ public void focusLost(FocusEvent fe) { - String name = fe.getComponent().getName(); - if (name.equals("name")) { + String _name = fe.getComponent().getName(); + if (_name.equals("name")) { InputOutputFocusListener.name = ((JTextField) (fe.getComponent())).getText(); - } else if (name.equals("enumeration")) { + } else if (_name.equals("enumeration")) { InputOutputFocusListener.enumeration = ((JTextField) (fe.getComponent())).getText(); secondaryEnumerationField = (JTextField) (fe.getComponent()); - } else if (name.equals("secondaryInputName")) { + } else if (_name.equals("secondaryInputName")) { secondaryInputName = ((JTextField) (fe.getComponent())).getText(); - } else if (name.equals("default")) { + } else if (_name.equals("default")) { secondaryInputDefaultField = ((JTextField) (fe.getComponent())).getText(); - } else if (name.equals("min")) { + } else if (_name.equals("min")) { secondaryInputMinField = ((JTextField) (fe.getComponent())).getText(); if (!checkIfInteger(secondaryInputMinField)) { secondaryInputMinField = ""; } - } else if (name.equals("max")) { + } else if (_name.equals("max")) { secondaryInputMaxField = ((JTextField) (fe.getComponent())).getText(); if (!checkIfInteger(secondaryInputMaxField)) { =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/ServiceInstancePanelFactory.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/ServiceInstancePanelFactory.java 2005/04/07 16:42:27 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/ServiceInstancePanelFactory.java 2005/04/07 21:01:13 1.2 @@ -541,13 +541,13 @@ detailLabel.setText(detailLabelText); int len = dataTypeName.length(); - JTextField datatype = new JTextField((len > 10) ? len - 5 : len + 15), dataName = new JTextField( + JTextField _datatype = new JTextField((len > 10) ? len - 5 : len + 15), dataName = new JTextField( (len > 10) ? len - 5 : len + 15); - datatype.setPreferredSize(datatype.getMinimumSize()); + _datatype.setPreferredSize(_datatype.getMinimumSize()); dataName.setPreferredSize(dataName.getMinimumSize()); - datatype.setEditable(false); - datatype.setName("dataName"); - datatype.setText(dataTypeName); + _datatype.setEditable(false); + _datatype.setName("dataName"); + _datatype.setText(dataTypeName); dataName.setName("name"); // required dataName.setActionCommand("simpleDataName"); @@ -614,7 +614,7 @@ JLabel typeLabel = new JLabel("Data Type: "); typeLabel.setPreferredSize(nameLabel.getMinimumSize()); f1.add(typeLabel); - f1.add(datatype); + f1.add(_datatype); JLabel namespaceLabel = new JLabel("Namespace(s): "); namespaceLabel.setPreferredSize(namespaceLabel.getMinimumSize()); f1.add(namespaceLabel); @@ -1264,11 +1264,11 @@ "Are you sure you would like to submit your service?", -1); - JButton submit = new JButton(" Register Your Service "); - submit.setActionCommand("registerService"); - submit.setName("registerService"); - submit.addActionListener(bal); - ButtonBeautifier.enhanceButton(submit, 5, tool.getClass()); + JButton _submit = new JButton(" Register Your Service "); + _submit.setActionCommand("registerService"); + _submit.setName("registerService"); + _submit.addActionListener(bal); + ButtonBeautifier.enhanceButton(_submit, 5, tool.getClass()); JButton cancel = new JButton(" Don't Register Yet "); cancel.setActionCommand("back"); @@ -1278,7 +1278,7 @@ JPanel buttons = null; buttons = initPanel(buttons, "", 1); - buttons.add(submit); + buttons.add(_submit); buttons.add(cancel); panel.add(buttons, BorderLayout.PAGE_END); =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/ServiceCreationTool.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/ServiceCreationTool.java 2005/04/07 16:42:27 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/ServiceCreationTool.java 2005/04/07 21:01:13 1.2 @@ -34,7 +34,7 @@ */ private static final long serialVersionUID = 1L; // set to false if creating a java application - private final boolean isApplet = true; + private static final boolean isApplet = true; private String newline = System.getProperty("line.separator"); /* private member variables */ =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/Service.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/Service.java 2005/04/07 16:42:27 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/serviceInstanceCreationTool/Service.java 2005/04/07 21:01:13 1.2 @@ -24,7 +24,6 @@ */ public class Service extends MobyService { - private String signatureURL = ""; private boolean PROTO = false; From kawas at pub.open-bio.org Thu Apr 7 17:01:35 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 16:43:46 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504072101.j37L1Zt5004980@pub.open-bio.org> kawas Thu Apr 7 17:01:35 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool In directory pub.open-bio.org:/tmp/cvs-serv4947/org/biomoby/client/ui/graphical/applets/objectCreationTool Modified Files: MobyXML.java Log Message: fixed some lexical/etc errors that javac found. moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool MobyXML.java,1.1,1.2 =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/MobyXML.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/MobyXML.java 2005/04/07 16:42:26 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/applets/objectCreationTool/MobyXML.java 2005/04/07 21:01:35 1.2 @@ -267,8 +267,8 @@ public String toString() { String str = out.outputString(document); String newline = System.getProperty("line.separator"); - String has = " (cardinality 1+)"; - String hasa = " (cardinality 1)"; + String _has = " (cardinality 1+)"; + String _hasa = " (cardinality 1)"; StringBuffer sb = new StringBuffer(""); Pattern hasPattern = Pattern.compile("(HAS_TAG_PM_)"); Pattern hasaPattern = Pattern.compile("(HASA_TAG_PM_)"); @@ -280,9 +280,9 @@ int start = 0; int end = 0; if ((matcher = hasPattern.matcher(line)).find()) { - sb.append(matcher.replaceAll("") + " " + has + newline); + sb.append(matcher.replaceAll("") + " " + _has + newline); } else if ((matcher = hasaPattern.matcher(line)).find()) { - sb.append(matcher.replaceAll("") + " " + hasa + newline); + sb.append(matcher.replaceAll("") + " " + _hasa + newline); } else { sb.append(line + newline); } From kawas at pub.open-bio.org Thu Apr 7 17:02:01 2005 From: kawas at pub.open-bio.org (Eddie Kawas) Date: Thu Apr 7 16:44:13 2005 Subject: [MOBY-guts] biomoby commit Message-ID: <200504072102.j37L21fD005018@pub.open-bio.org> kawas Thu Apr 7 17:02:01 EDT 2005 Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/errorpages In directory pub.open-bio.org:/tmp/cvs-serv4993/org/biomoby/client/ui/graphical/servlet/errorpages Modified Files: Error404.java Log Message: fixed some lexical/etc errors that javac found. moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/errorpages Error404.java,1.1,1.2 =================================================================== RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/errorpages/Error404.java,v retrieving revision 1.1 retrieving revision 1.2 diff -u -r1.1 -r1.2 --- /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/errorpages/Error404.java 2005/04/07 16:42:26 1.1 +++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/client/ui/graphical/servlet/errorpages/Error404.java 2005/04/07 21:02:01 1.2 @@ -24,7 +24,7 @@ * */ private static final long serialVersionUID = 1L; - private final String Four0FourError = "" + private static final String Four0FourError = "" + "" + "