* Fixed signatureURL in service response object.
From senger at pub.open-bio.org Mon Oct 18 10:35:06 2004
From: senger at pub.open-bio.org (senger@ebi.ac.uk)
Date: Mon Oct 18 10:06:37 2004
Subject: [MOBY-guts] biomoby commit
Message-ID: <200410181435.i9IEZ6HW002548@pub.open-bio.org>
senger
Mon Oct 18 10:35:06 EDT 2004
Update of /home/repository/moby/moby-live/Java/src/config
In directory pub.open-bio.org:/tmp/cvs-serv2405/src/config
Modified Files:
run-graphs-client
Log Message:
searching data paths and more, see docs/ChangeLog
moby-live/Java/src/config run-graphs-client,1.1,1.2
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/config/run-graphs-client,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/src/config/run-graphs-client 2004/09/23 00:18:01 1.1
+++ /home/repository/moby/moby-live/Java/src/config/run-graphs-client 2004/10/18 14:35:06 1.2
@@ -14,4 +14,7 @@
CLASSPATH=${PROJECT_HOME}/build/Clients:$CLASSPATH
CLASSPATH=`echo ${PROJECT_HOME}/lib/*.jar | tr ' ' ':'`:$CLASSPATH
+# WORK IN PROGRESS!!!
+CLASSPATH=`echo echo ${PROJECT_HOME}/lib2/*.jar | tr ' ' ':'`:$CLASSPATH
+
exec java -cp $CLASSPATH MobyGraphs "$@"
From senger at pub.open-bio.org Mon Oct 18 10:35:05 2004
From: senger at pub.open-bio.org (senger@ebi.ac.uk)
Date: Mon Oct 18 10:06:46 2004
Subject: [MOBY-guts] biomoby commit
Message-ID: <200410181435.i9IEZ53U002467@pub.open-bio.org>
senger
Mon Oct 18 10:35:05 EDT 2004
Update of /home/repository/moby/moby-live/Java/docs/graphs
In directory pub.open-bio.org:/tmp/cvs-serv2405/docs/graphs
Modified Files:
index.html
Added Files:
Taverna_howto.html
Log Message:
searching data paths and more, see docs/ChangeLog
moby-live/Java/docs/graphs Taverna_howto.html,NONE,1.1 index.html,1.3,1.4
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/graphs/index.html,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Java/docs/graphs/index.html 2003/11/25 13:18:10 1.3
+++ /home/repository/moby/moby-live/Java/docs/graphs/index.html 2004/10/18 14:35:05 1.4
@@ -21,14 +21,18 @@
world and perhaps to find new and unexpected pathes, or simply to find
unconnected orphans.
+It also creates workflow definitions that can be loaded into Taverna (a workflow engine and a GUI
+workbench around it).
+
The BioMoby Graphs are available:
- - As an experimental
- interactive service (implemented as a Java servlet).
+
- As an interactive service (implemented as
+ a Java servlet).
- The graphs can be also created from the command-line provided that
you have a popular Graphviz
@@ -81,7 +85,11 @@
but also scalable vector graphics and RDF)
- possibility to display only some services and some authorities, or to decide
to display only limited neighbourhood
-
- possibility to display only pathes between two services
+
- possibility to display only pathes between two selected services
+
-
+ possibility to display only pathes between two selected data types
+
-
+ possibility to create workflow definitions for selected paths
- caching created graphs for faster access...
- ...but in the same time allowing to refresh the cache anytime so you can see
immediate changes in a registry
@@ -105,15 +113,8 @@
- More robust dealing with the complex data types, such as
collections of elements of different types, or services
connected with more than one data input/output.
-
- Showing the graphs in an IDE, such as Haystack from IBM (we are
- close to have it done but we are not yet there).
-
- Add an option to limit views in order to skip connections between
- simple and collection data types (because they may not be always
- implemented by the service providers).
- Add an option to "show only" or "do not show at all" the orphan
services.
-
- Add a better support for saving graphs into local files.
-
- Add a graph showing pathes from input data-type to output data-type.
- And there is a Bug List to work on...
@@ -128,7 +129,7 @@
Suggestions, comments, and bug reports to: Martin Senger
-Last modified: Tue Nov 25 12:56:31 2003
+Last modified: Mon Oct 18 12:33:26 2004