[MOBY-guts] biomoby commit

[senger@ebi.ac.uk]

senger
Tue May 18 06:13:16 EDT 2004
Update of /home/repository/moby/moby-live/Java/src/Clients/help
In directory pub.open-bio.org:/tmp/cvs-serv26265/src/Clients/help

Modified Files:
	MobyCmdLineClient_usage.txt 
Log Message:
improved finding services in MobyCmdLineClient

moby-live/Java/src/Clients/help MobyCmdLineClient_usage.txt,1.3,1.4
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/Clients/help/MobyCmdLineClient_usage.txt,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Java/src/Clients/help/MobyCmdLineClient_usage.txt	2003/11/24 18:45:25	1.3
+++ /home/repository/moby/moby-live/Java/src/Clients/help/MobyCmdLineClient_usage.txt	2004/05/18 10:13:16	1.4
@@ -58,7 +58,8 @@
       find services by keywords (apply logical OR if more keywords);
       <keywords> is a comma-delimited lists of keywords
 
- To find services by their input and/or output data types:
+ To find services by their input and/or output data types
+ (note that this works only for simple data, not for collections):
 
    -fs-type <service-type>
    -fs-auth <authority>
@@ -69,6 +70,16 @@
    -fs-out   <outputs>
       <outputs> are comma-delimited names of output types
 
+   You may limit the number of found services by specifying:
+   -nc ... do not include services that are child types (more
+           specific) than the type you requested
+           (this option also applies when searching with -ft)
+   -np ... do not include services operating on parent types of
+           the data types you requested
+
+ The found services are printed in details, unless:
+   -on ... print only names of found services
+
  To register a data type:
 
    -rd-name  <data-type-name>
@@ -149,7 +160,4 @@
      is a name of an existing file, the contents of this file
      is used as an input parameter to the called mathod
 
-     Note that this method is meant mostly for debugging and may
-     be depracated later.
-
    -debug  ... print debug messages