[MOBY-guts] biomoby commit

[Mark Wilkinson]

mwilkinson
Tue May  4 19:54:16 EDT 2004
Update of /home/repository/moby/moby-live/Perl/MOBY
In directory pub.open-bio.org:/tmp/cvs-serv18504/Perl/MOBY

Modified Files:
	CommonSubs.pm CommonSubs.html 
Log Message:
fixing and improving documentation for the service input parser

moby-live/Perl/MOBY CommonSubs.pm,1.50,1.51 CommonSubs.html,1.11,1.12
===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOBY/CommonSubs.pm,v
retrieving revision 1.50
retrieving revision 1.51
diff -u -r1.50 -r1.51
--- /home/repository/moby/moby-live/Perl/MOBY/CommonSubs.pm	2004/05/03 20:51:15	1.50
+++ /home/repository/moby/moby-live/Perl/MOBY/CommonSubs.pm	2004/05/04 23:54:16	1.51
@@ -263,6 +263,41 @@
                             <mobyData...>...</mobyData>
                          b. \@article XML:DOM nodes for Collections
 
+            for example, the input message:
+            
+                <mobyData queryID = '1'>
+                    <Simple>
+                       <Object namespace=blah id=blah/>
+                    </Simple>
+                </mobyData>
+                <mobyData queryID = '2'>
+                    <Simple>
+                       <Object namespace=blah id=blah/>
+                    </Simple>
+                </mobyData>
+
+            will become:
+            (note that SIMPLE, COLLECTION, and SECONDARY are exported constants from this module)
+
+            @inputs = ([SIMPLE, 1, $DOM], [SIMPLE, 2, $DOM]) # the <Simple> block
+
+            for example, the input message:
+            
+                <mobyData queryID = '1'>
+                    <Collection>
+                    <Simple>
+                       <Object namespace=blah id=blah/>
+                    </Simple>
+                    <Simple>
+                       <Object namespace=blah id=blah/>
+                    </Simple>
+                    </Collection>
+                </mobyData>
+
+            will become:
+
+            @inputs = ( [COLLECTION, 1, [$DOM, $DOM]] ) # the <Simple> block
+
 =cut
 
 
@@ -314,7 +349,7 @@
                        <Object namespace=blah id=blah/>
                     </Simple>
                     <Parameter articleName='cutoff'>
-                       <default>10</default>
+                       <Value>10</Value>
                     </Parameter>
                 </mobyData>
 
@@ -344,7 +379,7 @@
                       </Simple>
                     </Collection>
                     <Parameter articleName='cutoff'>
-                       <default>10</default>
+                       <Value>10</Value>
                     </Parameter>
                 </mobyData>
 

===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOBY/CommonSubs.html,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -r1.11 -r1.12
--- /home/repository/moby/moby-live/Perl/MOBY/CommonSubs.html	2004/05/03 20:51:15	1.11
+++ /home/repository/moby/moby-live/Perl/MOBY/CommonSubs.html	2004/05/04 23:54:16	1.12
@@ -218,6 +218,41 @@
                          a. $article XML::DOM node for Simples
                             &lt;mobyData...&gt;...&lt;/mobyData&gt;
                          b. \@article XML:DOM nodes for Collections</pre>
+<pre>
+            for example, the input message:
+            
+                &lt;mobyData queryID = '1'&gt;
+                    &lt;Simple&gt;
+                       &lt;Object namespace=blah id=blah/&gt;
+                    &lt;/Simple&gt;
+                &lt;/mobyData&gt;
+                &lt;mobyData queryID = '2'&gt;
+                    &lt;Simple&gt;
+                       &lt;Object namespace=blah id=blah/&gt;
+                    &lt;/Simple&gt;
+                &lt;/mobyData&gt;</pre>
+<pre>
+            will become:
+            (note that SIMPLE, COLLECTION, and SECONDARY are exported constants from this module)</pre>
+<pre>
+            @inputs = ([SIMPLE, 1, $DOM], [SIMPLE, 2, $DOM]) # the &lt;Simple&gt; block</pre>
+<pre>
+            for example, the input message:
+            
+                &lt;mobyData queryID = '1'&gt;
+                    &lt;Collection&gt;
+                    &lt;Simple&gt;
+                       &lt;Object namespace=blah id=blah/&gt;
+                    &lt;/Simple&gt;
+                    &lt;Simple&gt;
+                       &lt;Object namespace=blah id=blah/&gt;
+                    &lt;/Simple&gt;
+                    &lt;/Collection&gt;
+                &lt;/mobyData&gt;</pre>
+<pre>
+            will become:</pre>
+<pre>
+            @inputs = ( [COLLECTION, 1, [$DOM, $DOM]] ) # the &lt;Simple&gt; block</pre>
 <p>
 </p>
 <h2><a name="complexserviceinputparser">complexServiceInputParser</a></h2>
@@ -242,7 +277,7 @@
                        &lt;Object namespace=blah id=blah/&gt;
                     &lt;/Simple&gt;
                     &lt;Parameter articleName='cutoff'&gt;
-                       &lt;default&gt;10&lt;/default&gt;
+                       &lt;Value&gt;10&lt;/Value&gt;
                     &lt;/Parameter&gt;
                 &lt;/mobyData&gt;</pre>
 <pre>
@@ -271,7 +306,7 @@
                       &lt;/Simple&gt;
                     &lt;/Collection&gt;
                     &lt;Parameter articleName='cutoff'&gt;
-                       &lt;default&gt;10&lt;/default&gt;
+                       &lt;Value&gt;10&lt;/Value&gt;
                     &lt;/Parameter&gt;
                 &lt;/mobyData&gt;</pre>
 <pre>