[MOBY-guts] biomoby commit

Yan Wong yanwong at pub.open-bio.org
Thu Dec 9 14:41:39 UTC 2004


yanwong
Thu Dec  9 09:41:35 EST 2004
Update of /home/repository/moby/moby-live/Python/doc/public
In directory pub.open-bio.org:/tmp/cvs-serv3725/public

Added Files:
	ZSI.TC.TypeCode-class.html __builtin__.object-class.html 
	__builtin__.type-class.html bioMoby-module.html 
	bioMoby.mobyClient-module.html 
	bioMoby.mobyClient.Central-class.html 
	bioMoby.mobyClient.Client-class.html 
	bioMoby.mobyDataTypes-module.html 
	bioMoby.mobyDataTypes.MobyContent-class.html 
	bioMoby.mobyDataTypes.MobyFloat-class.html 
	bioMoby.mobyDataTypes.MobyInteger-class.html 
	bioMoby.mobyDataTypes.MobyObject-class.html 
	bioMoby.mobyDataTypes.MobySequence-class.html 
	bioMoby.mobyDataTypes.MobyString-class.html 
	bioMoby.mobyDataTypes.MobyXref-class.html 
	bioMoby.mobyDataTypes.MobyZmPDB-class.html 
	bioMoby.mobyDataTypes.Parameter-class.html 
	bioMoby.mobyExceptions-module.html 
	bioMoby.mobyExceptions.EInvalidArgument-class.html 
	bioMoby.mobyExceptions.EInvalidType-class.html 
	bioMoby.mobyExceptions.EMethodRetrieveError-class.html 
	bioMoby.mobyExceptions.ENotAWSMethod-class.html 
	bioMoby.mobyExceptions.ETypeMismatch-class.html 
	bioMoby.mobyMarshal-module.html 
	bioMoby.mobyMarshal.MobyMarshaller-class.html 
	bioMoby.mobyMarshal.MobyUnmarshaller-class.html 
	bioMoby.mobyRegister-module.html 
	bioMoby.mobyRegister.GeneralInformations-class.html 
	bioMoby.mobyRegister.Namespace-class.html 
	bioMoby.mobyRegister.ObjectClass-class.html 
	bioMoby.mobyRegister.RegistrationObject-class.html 
	bioMoby.mobyRegister.ServiceType-class.html 
	bioMoby.mobyService-module.html 
	bioMoby.mobyService.Service-class.html 
	bioMoby.mobyService.ServiceArticle-class.html 
	bioMoby.mobyService.ServiceList-class.html 
	bioMoby.mobyService.ServiceQuery-class.html 
	bioMoby.mobyService.ServiceSecondary-class.html 
	bioMoby.ontology-module.html 
	bioMoby.ontology.AGI_LocusCode-module.html 
	bioMoby.ontology.AGI_LocusCode.MobyAGI_LocusCode-class.html 
	bioMoby.ontology.Allele_freq-module.html 
	bioMoby.ontology.Allele_freq.MobyAllele_freq-class.html 
	bioMoby.ontology.AminoAcidSequence-module.html 
	bioMoby.ontology.AminoAcidSequence.MobyAminoAcidSequence-class.html 
	bioMoby.ontology.B64_Encoded_PNG-module.html 
	bioMoby.ontology.B64_Encoded_PNG.MobyB64_Encoded_PNG-class.html 
	bioMoby.ontology.B64_Encoded_Postscript-module.html 
	bioMoby.ontology.B64_Encoded_Postscript.MobyB64_Encoded_Postscript-class.html 
	bioMoby.ontology.B64_encoded_PDB-module.html 
	bioMoby.ontology.B64_encoded_PDB.MobyB64_encoded_PDB-class.html 
	bioMoby.ontology.B64_encoded_gif-module.html 
	bioMoby.ontology.B64_encoded_gif.MobyB64_encoded_gif-class.html 
	bioMoby.ontology.B64_encoded_jpeg-module.html 
	bioMoby.ontology.B64_encoded_jpeg.MobyB64_encoded_jpeg-class.html 
	bioMoby.ontology.BasicGFFSequenceFeature-module.html 
	bioMoby.ontology.BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature-class.html 
	bioMoby.ontology.ClustalAlnFormattedText-module.html 
	bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText-class.html 
	bioMoby.ontology.CommentedAASequence-module.html 
	bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence-class.html 
	bioMoby.ontology.CommentedDNASequence-module.html 
	bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence-class.html 
	bioMoby.ontology.CommentedRNASequence-module.html 
	bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence-class.html 
	bioMoby.ontology.DNASequence-module.html 
	bioMoby.ontology.DNASequence.MobyDNASequence-class.html 
	bioMoby.ontology.DNASequenceWithGFFFeatures-module.html 
	bioMoby.ontology.DNASequenceWithGFFFeatures.MobyDNASequenceWithGFFFeatures-class.html 
	bioMoby.ontology.DateTime-module.html 
	bioMoby.ontology.DateTime.MobyDateTime-class.html 
	bioMoby.ontology.Decypher_Text-module.html 
	bioMoby.ontology.Decypher_Text.MobyDecypher_Text-class.html 
	bioMoby.ontology.Edge-module.html 
	bioMoby.ontology.Edge.MobyEdge-class.html 
	bioMoby.ontology.EmblFlatfile-module.html 
	bioMoby.ontology.EmblFlatfile.MobyEmblFlatfile-class.html 
	bioMoby.ontology.FASTA-module.html 
	bioMoby.ontology.FASTA.MobyFASTA-class.html 
	bioMoby.ontology.FASTA_AA-module.html 
	bioMoby.ontology.FASTA_AA.MobyFASTA_AA-class.html 
	bioMoby.ontology.FASTA_NA-module.html 
	bioMoby.ontology.FASTA_NA.MobyFASTA_NA-class.html 
	bioMoby.ontology.GFF-module.html 
	bioMoby.ontology.GFF.MobyGFF-class.html 
	bioMoby.ontology.GFF1-module.html 
	bioMoby.ontology.GFF1.MobyGFF1-class.html 
	bioMoby.ontology.GFF2-module.html 
	bioMoby.ontology.GFF2.MobyGFF2-class.html 
	bioMoby.ontology.GFF2_5-module.html 
	bioMoby.ontology.GFF2_5.MobyGFF2_5-class.html 
	bioMoby.ontology.GFF3-module.html 
	bioMoby.ontology.GFF3.MobyGFF3-class.html 
	bioMoby.ontology.GO_Term-module.html 
	bioMoby.ontology.GO_Term.MobyGO_Term-class.html 
	bioMoby.ontology.GenbankFlatfile-module.html 
	bioMoby.ontology.GenbankFlatfile.MobyGenbankFlatfile-class.html 
	bioMoby.ontology.GenericSequence-module.html 
	bioMoby.ontology.GenericSequence.MobyGenericSequence-class.html 
	bioMoby.ontology.GeneticElement-module.html 
	bioMoby.ontology.GeneticElement.MobyGeneticElement-class.html 
	bioMoby.ontology.Germplasm_Details-module.html 
	bioMoby.ontology.Germplasm_Details.MobyGermplasm_Details-class.html 
	bioMoby.ontology.Germplasm_List-module.html 
	bioMoby.ontology.Germplasm_List.MobyGermplasm_List-class.html 
	bioMoby.ontology.Global_Keyword-module.html 
	bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword-class.html 
	bioMoby.ontology.HBond_Pair-module.html 
	bioMoby.ontology.HBond_Pair.MobyHBond_Pair-class.html 
	bioMoby.ontology.HCA_picture-module.html 
	bioMoby.ontology.HCA_picture.MobyHCA_picture-class.html 
	bioMoby.ontology.Haplotyping_Study_obj-module.html 
	bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj-class.html 
	bioMoby.ontology.ICIS_Query-module.html 
	bioMoby.ontology.ICIS_Query.MobyICIS_Query-class.html 
	bioMoby.ontology.ICIS_Query2-module.html 
	bioMoby.ontology.ICIS_Query2.MobyICIS_Query2-class.html 
	bioMoby.ontology.ICIS_Query3-module.html 
	bioMoby.ontology.ICIS_Query3.MobyICIS_Query3-class.html 
	bioMoby.ontology.IntAct_XML-module.html 
	bioMoby.ontology.IntAct_XML.MobyIntAct_XML-class.html 
	bioMoby.ontology.Interaction-module.html 
	bioMoby.ontology.Interaction.MobyInteraction-class.html 
	bioMoby.ontology.InteractionMethod-module.html 
	bioMoby.ontology.InteractionMethod.MobyInteractionMethod-class.html 
	bioMoby.ontology.Interaction_partner-module.html 
	bioMoby.ontology.Interaction_partner.MobyInteraction_partner-class.html 
	bioMoby.ontology.Interactor-module.html 
	bioMoby.ontology.Interactor.MobyInteractor-class.html 
	bioMoby.ontology.MEME_Text-module.html 
	bioMoby.ontology.MEME_Text.MobyMEME_Text-class.html 
	bioMoby.ontology.MGIS_ACCESSION-module.html 
	bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION-class.html 
	bioMoby.ontology.MMP_Locus-module.html 
	bioMoby.ontology.MMP_Locus.MobyMMP_Locus-class.html 
	bioMoby.ontology.MO_Term_Test-module.html 
	bioMoby.ontology.MO_Term_Test.MobyMO_Term_Test-class.html 
	bioMoby.ontology.Multi_key_value_pair-module.html 
	bioMoby.ontology.Multi_key_value_pair.MobyMulti_key_value_pair-class.html 
	bioMoby.ontology.MyTree-module.html 
	bioMoby.ontology.MyTree.MobyMyTree-class.html 
	bioMoby.ontology.NCBI_BLAST_Text-module.html 
	bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text-class.html 
	bioMoby.ontology.NCBI_Blast_XML-module.html 
	bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML-class.html 
	bioMoby.ontology.NCBI_MEME_Text-module.html 
	bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text-class.html 
	bioMoby.ontology.NucleotideSequence-module.html 
	bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence-class.html 
	bioMoby.ontology.PDBFormattedText-module.html 
	bioMoby.ontology.PDBFormattedText.MobyPDBFormattedText-class.html 
	bioMoby.ontology.PDGJOB-module.html 
	bioMoby.ontology.PDGJOB.MobyPDGJOB-class.html 
	bioMoby.ontology.PhenotypeDescription-module.html 
	bioMoby.ontology.PhenotypeDescription.MobyPhenotypeDescription-class.html 
	bioMoby.ontology.PubMedMEDLINE-module.html 
	bioMoby.ontology.PubMedMEDLINE.MobyPubMedMEDLINE-class.html 
	bioMoby.ontology.RNASequence-module.html 
	bioMoby.ontology.RNASequence.MobyRNASequence-class.html 
	bioMoby.ontology.SINGER_ACCESSION-module.html 
	bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION-class.html 
	bioMoby.ontology.SchematikonMotifID-module.html 
	bioMoby.ontology.SchematikonMotifID.MobySchematikonMotifID-class.html 
	bioMoby.ontology.SchematikonMotifSupport-module.html 
	bioMoby.ontology.SchematikonMotifSupport.MobySchematikonMotifSupport-class.html 
	bioMoby.ontology.SchematikonSegmentAttributes-module.html 
	bioMoby.ontology.SchematikonSegmentAttributes.MobySchematikonSegmentAttributes-class.html 
	bioMoby.ontology.SchematikonSegmentID-module.html 
	bioMoby.ontology.SchematikonSegmentID.MobySchematikonSegmentID-class.html 
	bioMoby.ontology.SchematikonStructureAnnotation-module.html 
	bioMoby.ontology.SchematikonStructureAnnotation.MobySchematikonStructureAnnotation-class.html 
	bioMoby.ontology.SchematikonVorocodeName-module.html 
	bioMoby.ontology.SchematikonVorocodeName.MobySchematikonVorocodeName-class.html 
	bioMoby.ontology.Scored_acronym_string-module.html 
	bioMoby.ontology.Scored_acronym_string.MobyScored_acronym_string-class.html 
	bioMoby.ontology.SimpleAnnotatedGIFImage-module.html 
	bioMoby.ontology.SimpleAnnotatedGIFImage.MobySimpleAnnotatedGIFImage-class.html 
	bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html 
	bioMoby.ontology.SimpleAnnotatedJPEGImage.MobySimpleAnnotatedJPEGImage-class.html 
	bioMoby.ontology.Simple_key_value_pair-module.html 
	bioMoby.ontology.Simple_key_value_pair.MobySimple_key_value_pair-class.html 
	bioMoby.ontology.Snp_allele-module.html 
	bioMoby.ontology.Snp_allele.MobySnp_allele-class.html 
	bioMoby.ontology.Snp_genotype-module.html 
	bioMoby.ontology.Snp_genotype.MobySnp_genotype-class.html 
	bioMoby.ontology.Study-module.html 
	bioMoby.ontology.Study.MobyStudy-class.html 
	bioMoby.ontology.TEST-module.html 
	bioMoby.ontology.TEST.MobyTEST-class.html 
	bioMoby.ontology.TargetP_result-module.html 
	bioMoby.ontology.TargetP_result.MobyTargetP_result-class.html 
	bioMoby.ontology.Testout-module.html 
	bioMoby.ontology.Testout.MobyTestout-class.html 
	bioMoby.ontology.TextBase64-module.html 
	bioMoby.ontology.TextBase64.MobyTextBase64-class.html 
	bioMoby.ontology.TextFormatted-module.html 
	bioMoby.ontology.TextFormatted.MobyTextFormatted-class.html 
	bioMoby.ontology.TextHtml-module.html 
	bioMoby.ontology.TextHtml.MobyTextHtml-class.html 
	bioMoby.ontology.TextPlain-module.html 
	bioMoby.ontology.TextPlain.MobyTextPlain-class.html 
	bioMoby.ontology.TextUuencoded-module.html 
	bioMoby.ontology.TextUuencoded.MobyTextUuencoded-class.html 
	bioMoby.ontology.TextXml-module.html 
	bioMoby.ontology.TextXml.MobyTextXml-class.html 
	bioMoby.ontology.Text_plain-module.html 
	bioMoby.ontology.Text_plain.MobyText_plain-class.html 
	bioMoby.ontology.Trait_Details-module.html 
	bioMoby.ontology.Trait_Details.MobyTrait_Details-class.html 
	bioMoby.ontology.Tree-module.html 
	bioMoby.ontology.Tree.MobyTree-class.html 
	bioMoby.ontology.TropGENE_ACCESSION-module.html 
	bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION-class.html 
	bioMoby.ontology.TropGENE_Diversity_Matrix-module.html 
	bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix-class.html 
	bioMoby.ontology.TropGENE_LOCUS-module.html 
	bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS-class.html 
	bioMoby.ontology.VirtualSequence-module.html 
	bioMoby.ontology.VirtualSequence.MobyVirtualSequence-class.html 
	bioMoby.ontology.WU_BLAST_Text-module.html 
	bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text-class.html 
	bioMoby.ontology.Wildcard_Query-module.html 
	bioMoby.ontology.Wildcard_Query.MobyWildcard_Query-class.html 
	bioMoby.webservice-module.html 
	bioMoby.webservice.Dispatcher-module.html 
	bioMoby.webservice.Dispatcher.AbstractDispatcher-class.html 
	bioMoby.webservice.Dispatcher.Dispatcher-class.html 
	bioMoby.webservice.Dispatcher.EDispatchError-class.html 
	bioMoby.webservice.Dispatcher.LockedIterator-class.html 
	bioMoby.webservice.Dispatcher.MultiThread-class.html 
	bioMoby.webservice.Dispatcher.PBSDispatcher-class.html 
	bioMoby.webservice.Dispatcher.SimpleDispatcher-class.html 
	bioMoby.webservice.Dispatcher.SingleThread-class.html 
	bioMoby.webservice.Invocators-module.html 
	bioMoby.webservice.Invocators.CGIPostInvocator-class.html 
	bioMoby.webservice.Invocators.CGIPostMInvocator-class.html 
	bioMoby.webservice.Invocators.GeneralInvocator-class.html 
	bioMoby.webservice.Invocators.InvocatorError-class.html 
	bioMoby.webservice.Invocators.LocalInvocator-class.html 
	bioMoby.webservice.Invocators.PBSInvocator-class.html 
	bioMoby.webservice.Invocators.QsubParameters-class.html 
	bioMoby.webservice.TCBioMoby-module.html 
	bioMoby.webservice.TCBioMoby.Body-class.html 
	exceptions.Exception-class.html frames.html help.html 
	index.html indices.html threading.Thread-class.html 
	toc-bioMoby-module.html toc-bioMoby.mobyClient-module.html 
	toc-bioMoby.mobyDataTypes-module.html 
	toc-bioMoby.mobyExceptions-module.html 
	toc-bioMoby.mobyMarshal-module.html 
	toc-bioMoby.mobyRegister-module.html 
	toc-bioMoby.mobyService-module.html 
	toc-bioMoby.ontology-module.html 
	toc-bioMoby.ontology.AGI_LocusCode-module.html 
	toc-bioMoby.ontology.Allele_freq-module.html 
	toc-bioMoby.ontology.AminoAcidSequence-module.html 
	toc-bioMoby.ontology.B64_Encoded_PNG-module.html 
	toc-bioMoby.ontology.B64_Encoded_Postscript-module.html 
	toc-bioMoby.ontology.B64_encoded_PDB-module.html 
	toc-bioMoby.ontology.B64_encoded_gif-module.html 
	toc-bioMoby.ontology.B64_encoded_jpeg-module.html 
	toc-bioMoby.ontology.BasicGFFSequenceFeature-module.html 
	toc-bioMoby.ontology.ClustalAlnFormattedText-module.html 
	toc-bioMoby.ontology.CommentedAASequence-module.html 
	toc-bioMoby.ontology.CommentedDNASequence-module.html 
	toc-bioMoby.ontology.CommentedRNASequence-module.html 
	toc-bioMoby.ontology.DNASequence-module.html 
	toc-bioMoby.ontology.DNASequenceWithGFFFeatures-module.html 
	toc-bioMoby.ontology.DateTime-module.html 
	toc-bioMoby.ontology.Decypher_Text-module.html 
	toc-bioMoby.ontology.Edge-module.html 
	toc-bioMoby.ontology.EmblFlatfile-module.html 
	toc-bioMoby.ontology.FASTA-module.html 
	toc-bioMoby.ontology.FASTA_AA-module.html 
	toc-bioMoby.ontology.FASTA_NA-module.html 
	toc-bioMoby.ontology.GFF-module.html 
	toc-bioMoby.ontology.GFF1-module.html 
	toc-bioMoby.ontology.GFF2-module.html 
	toc-bioMoby.ontology.GFF2_5-module.html 
	toc-bioMoby.ontology.GFF3-module.html 
	toc-bioMoby.ontology.GO_Term-module.html 
	toc-bioMoby.ontology.GenbankFlatfile-module.html 
	toc-bioMoby.ontology.GenericSequence-module.html 
	toc-bioMoby.ontology.GeneticElement-module.html 
	toc-bioMoby.ontology.Germplasm_Details-module.html 
	toc-bioMoby.ontology.Germplasm_List-module.html 
	toc-bioMoby.ontology.Global_Keyword-module.html 
	toc-bioMoby.ontology.HBond_Pair-module.html 
	toc-bioMoby.ontology.HCA_picture-module.html 
	toc-bioMoby.ontology.Haplotyping_Study_obj-module.html 
	toc-bioMoby.ontology.ICIS_Query-module.html 
	toc-bioMoby.ontology.ICIS_Query2-module.html 
	toc-bioMoby.ontology.ICIS_Query3-module.html 
	toc-bioMoby.ontology.IntAct_XML-module.html 
	toc-bioMoby.ontology.Interaction-module.html 
	toc-bioMoby.ontology.InteractionMethod-module.html 
	toc-bioMoby.ontology.Interaction_partner-module.html 
	toc-bioMoby.ontology.Interactor-module.html 
	toc-bioMoby.ontology.MEME_Text-module.html 
	toc-bioMoby.ontology.MGIS_ACCESSION-module.html 
	toc-bioMoby.ontology.MMP_Locus-module.html 
	toc-bioMoby.ontology.MO_Term_Test-module.html 
	toc-bioMoby.ontology.Multi_key_value_pair-module.html 
	toc-bioMoby.ontology.MyTree-module.html 
	toc-bioMoby.ontology.NCBI_BLAST_Text-module.html 
	toc-bioMoby.ontology.NCBI_Blast_XML-module.html 
	toc-bioMoby.ontology.NCBI_MEME_Text-module.html 
	toc-bioMoby.ontology.NucleotideSequence-module.html 
	toc-bioMoby.ontology.PDBFormattedText-module.html 
	toc-bioMoby.ontology.PDGJOB-module.html 
	toc-bioMoby.ontology.PhenotypeDescription-module.html 
	toc-bioMoby.ontology.PubMedMEDLINE-module.html 
	toc-bioMoby.ontology.RNASequence-module.html 
	toc-bioMoby.ontology.SINGER_ACCESSION-module.html 
	toc-bioMoby.ontology.SchematikonMotifID-module.html 
	toc-bioMoby.ontology.SchematikonMotifSupport-module.html 
	toc-bioMoby.ontology.SchematikonSegmentAttributes-module.html 
	toc-bioMoby.ontology.SchematikonSegmentID-module.html 
	toc-bioMoby.ontology.SchematikonStructureAnnotation-module.html 
	toc-bioMoby.ontology.SchematikonVorocodeName-module.html 
	toc-bioMoby.ontology.Scored_acronym_string-module.html 
	toc-bioMoby.ontology.SimpleAnnotatedGIFImage-module.html 
	toc-bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html 
	toc-bioMoby.ontology.Simple_key_value_pair-module.html 
	toc-bioMoby.ontology.Snp_allele-module.html 
	toc-bioMoby.ontology.Snp_genotype-module.html 
	toc-bioMoby.ontology.Study-module.html 
	toc-bioMoby.ontology.TEST-module.html 
	toc-bioMoby.ontology.TargetP_result-module.html 
	toc-bioMoby.ontology.Testout-module.html 
	toc-bioMoby.ontology.TextBase64-module.html 
	toc-bioMoby.ontology.TextFormatted-module.html 
	toc-bioMoby.ontology.TextHtml-module.html 
	toc-bioMoby.ontology.TextPlain-module.html 
	toc-bioMoby.ontology.TextUuencoded-module.html 
	toc-bioMoby.ontology.TextXml-module.html 
	toc-bioMoby.ontology.Text_plain-module.html 
	toc-bioMoby.ontology.Trait_Details-module.html 
	toc-bioMoby.ontology.Tree-module.html 
	toc-bioMoby.ontology.TropGENE_ACCESSION-module.html 
	toc-bioMoby.ontology.TropGENE_Diversity_Matrix-module.html 
	toc-bioMoby.ontology.TropGENE_LOCUS-module.html 
	toc-bioMoby.ontology.VirtualSequence-module.html 
	toc-bioMoby.ontology.WU_BLAST_Text-module.html 
	toc-bioMoby.ontology.Wildcard_Query-module.html 
	toc-bioMoby.webservice-module.html 
	toc-bioMoby.webservice.Dispatcher-module.html 
	toc-bioMoby.webservice.Invocators-module.html 
	toc-bioMoby.webservice.TCBioMoby-module.html 
	toc-everything.html toc.html trees.html 
Log Message:


moby-live/Python/doc/public ZSI.TC.TypeCode-class.html,NONE,1.1 __builtin__.object-class.html,1.2,1.3 __builtin__.type-class.html,1.2,1.3 bioMoby-module.html,1.2,1.3 bioMoby.mobyClient-module.html,1.2,1.3 bioMoby.mobyClient.Central-class.html,1.2,1.3 bioMoby.mobyClient.Client-class.html,1.2,1.3 bioMoby.mobyDataTypes-module.html,1.2,1.3 bioMoby.mobyDataTypes.MobyContent-class.html,1.2,1.3 bioMoby.mobyDataTypes.MobyFloat-class.html,1.2,1.3 bioMoby.mobyDataTypes.MobyInteger-class.html,1.2,1.3 bioMoby.mobyDataTypes.MobyObject-class.html,1.2,1.3 bioMoby.mobyDataTypes.MobySequence-class.html,1.2,1.3 bioMoby.mobyDataTypes.MobyString-class.html,1.2,1.3 bioMoby.mobyDataTypes.MobyXref-class.html,1.2,1.3 bioMoby.mobyDataTypes.MobyZmPDB-class.html,1.2,1.3 bioMoby.mobyDataTypes.Parameter-class.html,1.2,1.3 bioMoby.mobyExceptions-module.html,1.2,1.3 bioMoby.mobyExceptions.EInvalidArgument-class.html,1.2,1.3 bioMoby.mobyExceptions.EInvalidType-class.html,1.2,1.3 bioMoby.mobyExceptions.EMet!
hodRetrieveError-class.html,1.2,1.3 bioMoby.mobyExceptions.ENotAWSMethod-class.html,1.2,1.3 bioMoby.mobyExceptions.ETypeMismatch-class.html,1.2,1.3 bioMoby.mobyMarshal-module.html,1.2,1.3 bioMoby.mobyMarshal.MobyMarshaller-class.html,1.2,1.3 bioMoby.mobyMarshal.MobyUnmarshaller-class.html,1.2,1.3 bioMoby.mobyRegister-module.html,1.2,1.3 bioMoby.mobyRegister.GeneralInformations-class.html,1.2,1.3 bioMoby.mobyRegister.Namespace-class.html,1.2,1.3 bioMoby.mobyRegister.ObjectClass-class.html,1.2,1.3 bioMoby.mobyRegister.RegistrationObject-class.html,1.2,1.3 bioMoby.mobyRegister.ServiceType-class.html,1.2,1.3 bioMoby.mobyService-module.html,1.2,1.3 bioMoby.mobyService.Service-class.html,1.2,1.3 bioMoby.mobyService.ServiceArticle-class.html,1.2,1.3 bioMoby.mobyService.ServiceList-class.html,1.2,1.3 bioMoby.mobyService.ServiceQuery-class.html,1.2,1.3 bioMoby.mobyService.ServiceSecondary-class.html,1.2,1.3 bioMoby.ontology-module.html,1.2,1.3 bioMoby.ontology.AGI_LocusCode-module.ht!
ml,1.2,1.3 bioMoby.ontology.AGI_LocusCode.MobyAGI_LocusCode-c!
lass.html,1.2,1.3 bioMoby.ontology.Allele_freq-module.html,1.2,1.3 bioMoby.ontology.Allele_freq.MobyAllele_freq-class.html,1.2,1.3 bioMoby.ontology.AminoAcidSequence-module.html,1.2,1.3 bioMoby.ontology.AminoAcidSequence.MobyAminoAcidSequence-class.html,1.2,1.3 bioMoby.ontology.B64_Encoded_PNG-module.html,1.2,1.3 bioMoby.ontology.B64_Encoded_PNG.MobyB64_Encoded_PNG-class.html,1.2,1.3 bioMoby.ontology.B64_Encoded_Postscript-module.html,1.2,1.3 bioMoby.ontology.B64_Encoded_Postscript.MobyB64_Encoded_Postscript-class.html,1.2,1.3 bioMoby.ontology.B64_encoded_PDB-module.html,1.2,1.3 bioMoby.ontology.B64_encoded_PDB.MobyB64_encoded_PDB-class.html,1.2,1.3 bioMoby.ontology.B64_encoded_gif-module.html,1.2,1.3 bioMoby.ontology.B64_encoded_gif.MobyB64_encoded_gif-class.html,1.2,1.3 bioMoby.ontology.B64_encoded_jpeg-module.html,1.2,1.3 bioMoby.ontology.B64_encoded_jpeg.MobyB64_encoded_jpeg-class.html,1.2,1.3 bioMoby.ontology.BasicGFFSequenceFeature-module.html,1.2,1.3 bioMoby.ontology.!
BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature-class.html,1.2,1.3 bioMoby.ontology.ClustalAlnFormattedText-module.html,NONE,1.1 bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText-class.html,NONE,1.1 bioMoby.ontology.CommentedAASequence-module.html,NONE,1.1 bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence-class.html,NONE,1.1 bioMoby.ontology.CommentedDNASequence-module.html,NONE,1.1 bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence-class.html,NONE,1.1 bioMoby.ontology.CommentedRNASequence-module.html,NONE,1.1 bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence-class.html,NONE,1.1 bioMoby.ontology.DNASequence-module.html,1.2,1.3 bioMoby.ontology.DNASequence.MobyDNASequence-class.html,1.2,1.3 bioMoby.ontology.DNASequenceWithGFFFeatures-module.html,1.2,1.3 bioMoby.ontology.DNASequenceWithGFFFeatures.MobyDNASequenceWithGFFFeatures-class.html,1.2,1.3 bioMoby.ontology.DateTime-module.html,1.2,1.3 bioMoby.ontology.DateTime.M!
obyDateTime-class.html,1.2,1.3 bioMoby.ontology.Decypher_Text!
-module.html,1.2,1.3 bioMoby.ontology.Decypher_Text.MobyDecypher_Text-class.html,1.2,1.3 bioMoby.ontology.Edge-module.html,1.2,1.3 bioMoby.ontology.Edge.MobyEdge-class.html,1.2,1.3 bioMoby.ontology.EmblFlatfile-module.html,1.2,1.3 bioMoby.ontology.EmblFlatfile.MobyEmblFlatfile-class.html,1.2,1.3 bioMoby.ontology.FASTA-module.html,1.2,1.3 bioMoby.ontology.FASTA.MobyFASTA-class.html,1.2,1.3 bioMoby.ontology.FASTA_AA-module.html,NONE,1.1 bioMoby.ontology.FASTA_AA.MobyFASTA_AA-class.html,NONE,1.1 bioMoby.ontology.FASTA_NA-module.html,NONE,1.1 bioMoby.ontology.FASTA_NA.MobyFASTA_NA-class.html,NONE,1.1 bioMoby.ontology.GFF-module.html,1.2,1.3 bioMoby.ontology.GFF.MobyGFF-class.html,1.2,1.3 bioMoby.ontology.GFF1-module.html,1.2,1.3 bioMoby.ontology.GFF1.MobyGFF1-class.html,1.2,1.3 bioMoby.ontology.GFF2-module.html,1.2,1.3 bioMoby.ontology.GFF2.MobyGFF2-class.html,1.2,1.3 bioMoby.ontology.GFF2_5-module.html,1.2,1.3 bioMoby.ontology.GFF2_5.MobyGFF2_5-class.html,1.2,1.3 bioMoby.ontolo!
gy.GFF3-module.html,1.2,1.3 bioMoby.ontology.GFF3.MobyGFF3-class.html,1.2,1.3 bioMoby.ontology.GO_Term-module.html,1.2,1.3 bioMoby.ontology.GO_Term.MobyGO_Term-class.html,1.2,1.3 bioMoby.ontology.GenbankFlatfile-module.html,1.2,1.3 bioMoby.ontology.GenbankFlatfile.MobyGenbankFlatfile-class.html,1.2,1.3 bioMoby.ontology.GenericSequence-module.html,1.2,1.3 bioMoby.ontology.GenericSequence.MobyGenericSequence-class.html,1.2,1.3 bioMoby.ontology.GeneticElement-module.html,1.2,1.3 bioMoby.ontology.GeneticElement.MobyGeneticElement-class.html,1.2,1.3 bioMoby.ontology.Germplasm_Details-module.html,1.2,1.3 bioMoby.ontology.Germplasm_Details.MobyGermplasm_Details-class.html,1.2,1.3 bioMoby.ontology.Germplasm_List-module.html,1.2,1.3 bioMoby.ontology.Germplasm_List.MobyGermplasm_List-class.html,1.2,1.3 bioMoby.ontology.Global_Keyword-module.html,1.2,1.3 bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword-class.html,1.2,1.3 bioMoby.ontology.HBond_Pair-module.html,NONE,1.1 bioMoby.ontolo!
gy.HBond_Pair.MobyHBond_Pair-class.html,NONE,1.1 bioMoby.onto!
logy.HCA_picture-module.html,1.2,1.3 bioMoby.ontology.HCA_picture.MobyHCA_picture-class.html,1.2,1.3 bioMoby.ontology.Haplotyping_Study_obj-module.html,1.2,1.3 bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj-class.html,1.2,1.3 bioMoby.ontology.ICIS_Query-module.html,1.2,1.3 bioMoby.ontology.ICIS_Query.MobyICIS_Query-class.html,1.2,1.3 bioMoby.ontology.ICIS_Query2-module.html,1.2,1.3 bioMoby.ontology.ICIS_Query2.MobyICIS_Query2-class.html,1.2,1.3 bioMoby.ontology.ICIS_Query3-module.html,1.2,1.3 bioMoby.ontology.ICIS_Query3.MobyICIS_Query3-class.html,1.2,1.3 bioMoby.ontology.IntAct_XML-module.html,1.2,1.3 bioMoby.ontology.IntAct_XML.MobyIntAct_XML-class.html,1.2,1.3 bioMoby.ontology.Interaction-module.html,1.2,1.3 bioMoby.ontology.Interaction.MobyInteraction-class.html,1.2,1.3 bioMoby.ontology.InteractionMethod-module.html,1.2,1.3 bioMoby.ontology.InteractionMethod.MobyInteractionMethod-class.html,1.2,1.3 bioMoby.ontology.Interaction_partner-module.html,1.2,1.!
3 bioMoby.ontology.Interaction_partner.MobyInteraction_partner-class.html,1.2,1.3 bioMoby.ontology.Interactor-module.html,1.2,1.3 bioMoby.ontology.Interactor.MobyInteractor-class.html,1.2,1.3 bioMoby.ontology.MEME_Text-module.html,NONE,1.1 bioMoby.ontology.MEME_Text.MobyMEME_Text-class.html,NONE,1.1 bioMoby.ontology.MGIS_ACCESSION-module.html,NONE,1.1 bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION-class.html,NONE,1.1 bioMoby.ontology.MMP_Locus-module.html,1.2,1.3 bioMoby.ontology.MMP_Locus.MobyMMP_Locus-class.html,1.2,1.3 bioMoby.ontology.MO_Term_Test-module.html,1.2,1.3 bioMoby.ontology.MO_Term_Test.MobyMO_Term_Test-class.html,1.2,1.3 bioMoby.ontology.Multi_key_value_pair-module.html,1.2,1.3 bioMoby.ontology.Multi_key_value_pair.MobyMulti_key_value_pair-class.html,1.2,1.3 bioMoby.ontology.MyTree-module.html,1.2,1.3 bioMoby.ontology.MyTree.MobyMyTree-class.html,1.2,1.3 bioMoby.ontology.NCBI_BLAST_Text-module.html,1.2,1.3 bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Te!
xt-class.html,1.2,1.3 bioMoby.ontology.NCBI_Blast_XML-module.!
html,1.2,1.3 bioMoby.ontology.NCBI_
Blast_XML.MobyNCBI_Blast_XML-class.html,1.2,1.3 bioMoby.ontology.NCBI_MEME_Text-module.html,NONE,1.1 bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text-class.html,NONE,1.1 bioMoby.ontology.NucleotideSequence-module.html,1.2,1.3 bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence-class.html,1.2,1.3 bioMoby.ontology.PDBFormattedText-module.html,1.2,1.3 bioMoby.ontology.PDBFormattedText.MobyPDBFormattedText-class.html,1.2,1.3 bioMoby.ontology.PDGJOB-module.html,1.2,1.3 bioMoby.ontology.PDGJOB.MobyPDGJOB-class.html,1.2,1.3 bioMoby.ontology.PhenotypeDescription-module.html,1.2,1.3 bioMoby.ontology.PhenotypeDescription.MobyPhenotypeDescription-class.html,1.2,1.3 bioMoby.ontology.PubMedMEDLINE-module.html,1.2,1.3 bioMoby.ontology.PubMedMEDLINE.MobyPubMedMEDLINE-class.html,1.2,1.3 bioMoby.ontology.RNASequence-module.html,1.2,1.3 bioMoby.ontology.RNASequence.MobyRNASequence-class.html,1.2,1.3 bioMoby.ontology.SINGER_ACCESSION-module.html,NONE,1.1 bioMoby.ontology.SINGER_ACCESS!
ION.MobySINGER_ACCESSION-class.html,NONE,1.1 bioMoby.ontology.SchematikonMotifID-module.html,1.2,1.3 bioMoby.ontology.SchematikonMotifID.MobySchematikonMotifID-class.html,1.2,1.3 bioMoby.ontology.SchematikonMotifSupport-module.html,1.2,1.3 bioMoby.ontology.SchematikonMotifSupport.MobySchematikonMotifSupport-class.html,1.2,1.3 bioMoby.ontology.SchematikonSegmentAttributes-module.html,1.2,1.3 bioMoby.ontology.SchematikonSegmentAttributes.MobySchematikonSegmentAttributes-class.html,1.2,1.3 bioMoby.ontology.SchematikonSegmentID-module.html,1.2,1.3 bioMoby.ontology.SchematikonSegmentID.MobySchematikonSegmentID-class.html,1.2,1.3 bioMoby.ontology.SchematikonStructureAnnotation-module.html,1.2,1.3 bioMoby.ontology.SchematikonStructureAnnotation.MobySchematikonStructureAnnotation-class.html,1.2,1.3 bioMoby.ontology.SchematikonVorocodeName-module.html,1.2,1.3 bioMoby.ontology.SchematikonVorocodeName.MobySchematikonVorocodeName-class.html,1.2,1.3 bioMoby.ontology.Scored_acronym_string!
-module.html,1.2,1.3 bioMoby.ontology.Scored_acronym_string.M!
obyScored_acronym_string-class.html,1.2,1.3 bioMoby.ontology.SimpleAnnotatedGIFImage-module.html,1.2,1.3 bioMoby.ontology.SimpleAnnotatedGIFImage.MobySimpleAnnotatedGIFImage-class.html,1.2,1.3 bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html,1.2,1.3 bioMoby.ontology.SimpleAnnotatedJPEGImage.MobySimpleAnnotatedJPEGImage-class.html,1.2,1.3 bioMoby.ontology.Simple_key_value_pair-module.html,1.2,1.3 bioMoby.ontology.Simple_key_value_pair.MobySimple_key_value_pair-class.html,1.2,1.3 bioMoby.ontology.Snp_allele-module.html,1.2,1.3 bioMoby.ontology.Snp_allele.MobySnp_allele-class.html,1.2,1.3 bioMoby.ontology.Snp_genotype-module.html,1.2,1.3 bioMoby.ontology.Snp_genotype.MobySnp_genotype-class.html,1.2,1.3 bioMoby.ontology.Study-module.html,1.2,1.3 bioMoby.ontology.Study.MobyStudy-class.html,1.2,1.3 bioMoby.ontology.TEST-module.html,NONE,1.1 bioMoby.ontology.TEST.MobyTEST-class.html,NONE,1.1 bioMoby.ontology.TargetP_result-module.html,1.2,1.3 bioMoby.ontology.TargetP_result.Mo!
byTargetP_result-class.html,1.2,1.3 bioMoby.ontology.Testout-module.html,1.2,1.3 bioMoby.ontology.Testout.MobyTestout-class.html,1.2,1.3 bioMoby.ontology.TextBase64-module.html,1.2,1.3 bioMoby.ontology.TextBase64.MobyTextBase64-class.html,1.2,1.3 bioMoby.ontology.TextFormatted-module.html,1.2,1.3 bioMoby.ontology.TextFormatted.MobyTextFormatted-class.html,1.2,1.3 bioMoby.ontology.TextHtml-module.html,1.2,1.3 bioMoby.ontology.TextHtml.MobyTextHtml-class.html,1.2,1.3 bioMoby.ontology.TextPlain-module.html,1.2,1.3 bioMoby.ontology.TextPlain.MobyTextPlain-class.html,1.2,1.3 bioMoby.ontology.TextUuencoded-module.html,1.2,1.3 bioMoby.ontology.TextUuencoded.MobyTextUuencoded-class.html,1.2,1.3 bioMoby.ontology.TextXml-module.html,1.2,1.3 bioMoby.ontology.TextXml.MobyTextXml-class.html,1.2,1.3 bioMoby.ontology.Text_plain-module.html,1.2,1.3 bioMoby.ontology.Text_plain.MobyText_plain-class.html,1.2,1.3 bioMoby.ontology.Trait_Details-module.html,1.2,1.3 bioMoby.ontology.Trait_Details.!
MobyTrait_Details-class.html,1.2,1.3 bioMoby.ontology.Tree-mo!
dule.html,1.2,1.3 bioMoby.ontology.Tree.MobyTree-class.html,1.2,1.3 bioMoby.ontology.TropGENE_ACCESSION-module.html,NONE,1.1 bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION-class.html,NONE,1.1 bioMoby.ontology.TropGENE_Diversity_Matrix-module.html,NONE,1.1 bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix-class.html,NONE,1.1 bioMoby.ontology.TropGENE_LOCUS-module.html,NONE,1.1 bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS-class.html,NONE,1.1 bioMoby.ontology.VirtualSequence-module.html,1.2,1.3 bioMoby.ontology.VirtualSequence.MobyVirtualSequence-class.html,1.2,1.3 bioMoby.ontology.WU_BLAST_Text-module.html,1.2,1.3 bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text-class.html,1.2,1.3 bioMoby.ontology.Wildcard_Query-module.html,1.2,1.3 bioMoby.ontology.Wildcard_Query.MobyWildcard_Query-class.html,1.2,1.3 bioMoby.webservice-module.html,1.2,1.3 bioMoby.webservice.Dispatcher-module.html,1.2,1.3 bioMoby.webservice.Dispatcher.AbstractDispatcher-!
class.html,NONE,1.1 bioMoby.webservice.Dispatcher.Dispatcher-class.html,1.2,1.3 bioMoby.webservice.Dispatcher.EDispatchError-class.html,1.2,1.3 bioMoby.webservice.Dispatcher.LockedIterator-class.html,1.2,1.3 bioMoby.webservice.Dispatcher.MultiThread-class.html,1.2,1.3 bioMoby.webservice.Dispatcher.PBSDispatcher-class.html,NONE,1.1 bioMoby.webservice.Dispatcher.SimpleDispatcher-class.html,NONE,1.1 bioMoby.webservice.Dispatcher.SingleThread-class.html,1.2,1.3 bioMoby.webservice.Invocators-module.html,1.2,1.3 bioMoby.webservice.Invocators.CGIPostInvocator-class.html,1.2,1.3 bioMoby.webservice.Invocators.CGIPostMInvocator-class.html,1.2,1.3 bioMoby.webservice.Invocators.GeneralInvocator-class.html,1.2,1.3 bioMoby.webservice.Invocators.InvocatorError-class.html,1.2,1.3 bioMoby.webservice.Invocators.LocalInvocator-class.html,1.2,1.3 bioMoby.webservice.Invocators.PBSInvocator-class.html,NONE,1.1 bioMoby.webservice.Invocators.QsubParameters-class.html,NONE,1.1 bioMoby.webservice.TCB!
ioMoby-module.html,NONE,1.1 bioMoby.webservice.TCBioMoby.Body!
-class.html,NONE,1.1 exceptions.Exception-class.html,1.2,1.3 frames.html,1.2,1.3 help.html,1.2,1.3 index.html,1.2,1.3 indices.html,1.2,1.3 threading.Thread-class.html,1.2,1.3 toc-bioMoby-module.html,1.2,1.3 toc-bioMoby.mobyClient-module.html,1.2,1.3 toc-bioMoby.mobyDataTypes-module.html,1.2,1.3 toc-bioMoby.mobyExceptions-module.html,1.2,1.3 toc-bioMoby.mobyMarshal-module.html,1.2,1.3 toc-bioMoby.mobyRegister-module.html,1.2,1.3 toc-bioMoby.mobyService-module.html,1.2,1.3 toc-bioMoby.ontology-module.html,1.2,1.3 toc-bioMoby.ontology.AGI_LocusCode-module.html,1.2,1.3 toc-bioMoby.ontology.Allele_freq-module.html,1.2,1.3 toc-bioMoby.ontology.AminoAcidSequence-module.html,1.2,1.3 toc-bioMoby.ontology.B64_Encoded_PNG-module.html,1.2,1.3 toc-bioMoby.ontology.B64_Encoded_Postscript-module.html,1.2,1.3 toc-bioMoby.ontology.B64_encoded_PDB-module.html,1.2,1.3 toc-bioMoby.ontology.B64_encoded_gif-module.html,1.2,1.3 toc-bioMoby.ontology.B64_encoded_jpeg-module.html,1.2,1.3 toc-bioMoby.!
ontology.BasicGFFSequenceFeature-module.html,1.2,1.3 toc-bioMoby.ontology.ClustalAlnFormattedText-module.html,NONE,1.1 toc-bioMoby.ontology.CommentedAASequence-module.html,NONE,1.1 toc-bioMoby.ontology.CommentedDNASequence-module.html,NONE,1.1 toc-bioMoby.ontology.CommentedRNASequence-module.html,NONE,1.1 toc-bioMoby.ontology.DNASequence-module.html,1.2,1.3 toc-bioMoby.ontology.DNASequenceWithGFFFeatures-module.html,1.2,1.3 toc-bioMoby.ontology.DateTime-module.html,1.2,1.3 toc-bioMoby.ontology.Decypher_Text-module.html,1.2,1.3 toc-bioMoby.ontology.Edge-module.html,1.2,1.3 toc-bioMoby.ontology.EmblFlatfile-module.html,1.2,1.3 toc-bioMoby.ontology.FASTA-module.html,1.2,1.3 toc-bioMoby.ontology.FASTA_AA-module.html,NONE,1.1 toc-bioMoby.ontology.FASTA_NA-module.html,NONE,1.1 toc-bioMoby.ontology.GFF-module.html,1.2,1.3 toc-bioMoby.ontology.GFF1-module.html,1.2,1.3 toc-bioMoby.ontology.GFF2-module.html,1.2,1.3 toc-bioMoby.ontology.GFF2_5-module.html,1.2,1.3 toc-bioMoby.ontology.G!
FF3-module.html,1.2,1.3 toc-bioMoby.ontology.GO_Term-module.h!
tml,1.2,1.3 toc-bioMoby.ontology.Ge
nbankFlatfile-module.html,1.2,1.3 toc-bioMoby.ontology.GenericSequence-module.html,1.2,1.3 toc-bioMoby.ontology.GeneticElement-module.html,1.2,1.3 toc-bioMoby.ontology.Germplasm_Details-module.html,1.2,1.3 toc-bioMoby.ontology.Germplasm_List-module.html,1.2,1.3 toc-bioMoby.ontology.Global_Keyword-module.html,1.2,1.3 toc-bioMoby.ontology.HBond_Pair-module.html,NONE,1.1 toc-bioMoby.ontology.HCA_picture-module.html,1.2,1.3 toc-bioMoby.ontology.Haplotyping_Study_obj-module.html,1.2,1.3 toc-bioMoby.ontology.ICIS_Query-module.html,1.2,1.3 toc-bioMoby.ontology.ICIS_Query2-module.html,1.2,1.3 toc-bioMoby.ontology.ICIS_Query3-module.html,1.2,1.3 toc-bioMoby.ontology.IntAct_XML-module.html,1.2,1.3 toc-bioMoby.ontology.Interaction-module.html,1.2,1.3 toc-bioMoby.ontology.InteractionMethod-module.html,1.2,1.3 toc-bioMoby.ontology.Interaction_partner-module.html,1.2,1.3 toc-bioMoby.ontology.Interactor-module.html,1.2,1.3 toc-bioMoby.ontology.MEME_Text-module.html,NONE,1.1 toc-bioMoby.ont!
ology.MGIS_ACCESSION-module.html,NONE,1.1 toc-bioMoby.ontology.MMP_Locus-module.html,1.2,1.3 toc-bioMoby.ontology.MO_Term_Test-module.html,1.2,1.3 toc-bioMoby.ontology.Multi_key_value_pair-module.html,1.2,1.3 toc-bioMoby.ontology.MyTree-module.html,1.2,1.3 toc-bioMoby.ontology.NCBI_BLAST_Text-module.html,1.2,1.3 toc-bioMoby.ontology.NCBI_Blast_XML-module.html,1.2,1.3 toc-bioMoby.ontology.NCBI_MEME_Text-module.html,NONE,1.1 toc-bioMoby.ontology.NucleotideSequence-module.html,1.2,1.3 toc-bioMoby.ontology.PDBFormattedText-module.html,1.2,1.3 toc-bioMoby.ontology.PDGJOB-module.html,1.2,1.3 toc-bioMoby.ontology.PhenotypeDescription-module.html,1.2,1.3 toc-bioMoby.ontology.PubMedMEDLINE-module.html,1.2,1.3 toc-bioMoby.ontology.RNASequence-module.html,1.2,1.3 toc-bioMoby.ontology.SINGER_ACCESSION-module.html,NONE,1.1 toc-bioMoby.ontology.SchematikonMotifID-module.html,1.2,1.3 toc-bioMoby.ontology.SchematikonMotifSupport-module.html,1.2,1.3 toc-bioMoby.ontology.SchematikonSegmentAtt!
ributes-module.html,1.2,1.3 toc-bioMoby.ontology.SchematikonS!
egmentID-module.html,1.2,1.3 toc-bioMoby.ontology.SchematikonStructureAnnotation-module.html,1.2,1.3 toc-bioMoby.ontology.SchematikonVorocodeName-module.html,1.2,1.3 toc-bioMoby.ontology.Scored_acronym_string-module.html,1.2,1.3 toc-bioMoby.ontology.SimpleAnnotatedGIFImage-module.html,1.2,1.3 toc-bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html,1.2,1.3 toc-bioMoby.ontology.Simple_key_value_pair-module.html,1.2,1.3 toc-bioMoby.ontology.Snp_allele-module.html,1.2,1.3 toc-bioMoby.ontology.Snp_genotype-module.html,1.2,1.3 toc-bioMoby.ontology.Study-module.html,1.2,1.3 toc-bioMoby.ontology.TEST-module.html,NONE,1.1 toc-bioMoby.ontology.TargetP_result-module.html,1.2,1.3 toc-bioMoby.ontology.Testout-module.html,1.2,1.3 toc-bioMoby.ontology.TextBase64-module.html,1.2,1.3 toc-bioMoby.ontology.TextFormatted-module.html,1.2,1.3 toc-bioMoby.ontology.TextHtml-module.html,1.2,1.3 toc-bioMoby.ontology.TextPlain-module.html,1.2,1.3 toc-bioMoby.ontology.TextUuencoded-module.html,1.2,1.!
3 toc-bioMoby.ontology.TextXml-module.html,1.2,1.3 toc-bioMoby.ontology.Text_plain-module.html,1.2,1.3 toc-bioMoby.ontology.Trait_Details-module.html,1.2,1.3 toc-bioMoby.ontology.Tree-module.html,1.2,1.3 toc-bioMoby.ontology.TropGENE_ACCESSION-module.html,NONE,1.1 toc-bioMoby.ontology.TropGENE_Diversity_Matrix-module.html,NONE,1.1 toc-bioMoby.ontology.TropGENE_LOCUS-module.html,NONE,1.1 toc-bioMoby.ontology.VirtualSequence-module.html,1.2,1.3 toc-bioMoby.ontology.WU_BLAST_Text-module.html,1.2,1.3 toc-bioMoby.ontology.Wildcard_Query-module.html,1.2,1.3 toc-bioMoby.webservice-module.html,1.2,1.3 toc-bioMoby.webservice.Dispatcher-module.html,1.2,1.3 toc-bioMoby.webservice.Invocators-module.html,1.2,1.3 toc-bioMoby.webservice.TCBioMoby-module.html,NONE,1.1 toc-everything.html,1.2,1.3 toc.html,1.2,1.3 trees.html,1.2,1.3
===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/__builtin__.object-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/__builtin__.object-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/__builtin__.object-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -245,13 +251,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/__builtin__.type-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/__builtin__.type-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/__builtin__.type-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -489,13 +495,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby-module.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -58,6 +64,10 @@
     <li> <b><a href="bioMoby.ontology.B64_Encoded_PNG-module.html"><code>B64_Encoded_PNG</code></a></b>
     <li> <b><a href="bioMoby.ontology.B64_Encoded_Postscript-module.html"><code>B64_Encoded_Postscript</code></a></b>
     <li> <b><a href="bioMoby.ontology.BasicGFFSequenceFeature-module.html"><code>BasicGFFSequenceFeature</code></a></b>
+    <li> <b><a href="bioMoby.ontology.ClustalAlnFormattedText-module.html"><code>ClustalAlnFormattedText</code></a></b>
+    <li> <b><a href="bioMoby.ontology.CommentedAASequence-module.html"><code>CommentedAASequence</code></a></b>
+    <li> <b><a href="bioMoby.ontology.CommentedDNASequence-module.html"><code>CommentedDNASequence</code></a></b>
+    <li> <b><a href="bioMoby.ontology.CommentedRNASequence-module.html"><code>CommentedRNASequence</code></a></b>
     <li> <b><a href="bioMoby.ontology.DateTime-module.html"><code>DateTime</code></a></b>
     <li> <b><a href="bioMoby.ontology.Decypher_Text-module.html"><code>Decypher_Text</code></a></b>
     <li> <b><a href="bioMoby.ontology.DNASequence-module.html"><code>DNASequence</code></a></b>
@@ -65,6 +75,8 @@
     <li> <b><a href="bioMoby.ontology.Edge-module.html"><code>Edge</code></a></b>
     <li> <b><a href="bioMoby.ontology.EmblFlatfile-module.html"><code>EmblFlatfile</code></a></b>
     <li> <b><a href="bioMoby.ontology.FASTA-module.html"><code>FASTA</code></a></b>
+    <li> <b><a href="bioMoby.ontology.FASTA_AA-module.html"><code>FASTA_AA</code></a></b>
+    <li> <b><a href="bioMoby.ontology.FASTA_NA-module.html"><code>FASTA_NA</code></a></b>
     <li> <b><a href="bioMoby.ontology.GenbankFlatfile-module.html"><code>GenbankFlatfile</code></a></b>
     <li> <b><a href="bioMoby.ontology.GenericSequence-module.html"><code>GenericSequence</code></a></b>
     <li> <b><a href="bioMoby.ontology.GeneticElement-module.html"><code>GeneticElement</code></a></b>
@@ -78,6 +90,7 @@
     <li> <b><a href="bioMoby.ontology.Global_Keyword-module.html"><code>Global_Keyword</code></a></b>
     <li> <b><a href="bioMoby.ontology.GO_Term-module.html"><code>GO_Term</code></a></b>
     <li> <b><a href="bioMoby.ontology.Haplotyping_Study_obj-module.html"><code>Haplotyping_Study_obj</code></a></b>
+    <li> <b><a href="bioMoby.ontology.HBond_Pair-module.html"><code>HBond_Pair</code></a></b>
     <li> <b><a href="bioMoby.ontology.HCA_picture-module.html"><code>HCA_picture</code></a></b>
     <li> <b><a href="bioMoby.ontology.ICIS_Query-module.html"><code>ICIS_Query</code></a></b>
     <li> <b><a href="bioMoby.ontology.ICIS_Query2-module.html"><code>ICIS_Query2</code></a></b>
@@ -87,12 +100,15 @@
     <li> <b><a href="bioMoby.ontology.Interaction_partner-module.html"><code>Interaction_partner</code></a></b>
     <li> <b><a href="bioMoby.ontology.InteractionMethod-module.html"><code>InteractionMethod</code></a></b>
     <li> <b><a href="bioMoby.ontology.Interactor-module.html"><code>Interactor</code></a></b>
+    <li> <b><a href="bioMoby.ontology.MEME_Text-module.html"><code>MEME_Text</code></a></b>
+    <li> <b><a href="bioMoby.ontology.MGIS_ACCESSION-module.html"><code>MGIS_ACCESSION</code></a></b>
     <li> <b><a href="bioMoby.ontology.MMP_Locus-module.html"><code>MMP_Locus</code></a></b>
     <li> <b><a href="bioMoby.ontology.MO_Term_Test-module.html"><code>MO_Term_Test</code></a></b>
     <li> <b><a href="bioMoby.ontology.Multi_key_value_pair-module.html"><code>Multi_key_value_pair</code></a></b>
     <li> <b><a href="bioMoby.ontology.MyTree-module.html"><code>MyTree</code></a></b>
     <li> <b><a href="bioMoby.ontology.NCBI_BLAST_Text-module.html"><code>NCBI_BLAST_Text</code></a></b>
     <li> <b><a href="bioMoby.ontology.NCBI_Blast_XML-module.html"><code>NCBI_Blast_XML</code></a></b>
+    <li> <b><a href="bioMoby.ontology.NCBI_MEME_Text-module.html"><code>NCBI_MEME_Text</code></a></b>
     <li> <b><a href="bioMoby.ontology.NucleotideSequence-module.html"><code>NucleotideSequence</code></a></b>
     <li> <b><a href="bioMoby.ontology.PDBFormattedText-module.html"><code>PDBFormattedText</code></a></b>
     <li> <b><a href="bioMoby.ontology.PDGJOB-module.html"><code>PDGJOB</code></a></b>
@@ -109,10 +125,12 @@
     <li> <b><a href="bioMoby.ontology.Simple_key_value_pair-module.html"><code>Simple_key_value_pair</code></a></b>
     <li> <b><a href="bioMoby.ontology.SimpleAnnotatedGIFImage-module.html"><code>SimpleAnnotatedGIFImage</code></a></b>
     <li> <b><a href="bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html"><code>SimpleAnnotatedJPEGImage</code></a></b>
+    <li> <b><a href="bioMoby.ontology.SINGER_ACCESSION-module.html"><code>SINGER_ACCESSION</code></a></b>
     <li> <b><a href="bioMoby.ontology.Snp_allele-module.html"><code>Snp_allele</code></a></b>
     <li> <b><a href="bioMoby.ontology.Snp_genotype-module.html"><code>Snp_genotype</code></a></b>
     <li> <b><a href="bioMoby.ontology.Study-module.html"><code>Study</code></a></b>
     <li> <b><a href="bioMoby.ontology.TargetP_result-module.html"><code>TargetP_result</code></a></b>
+    <li> <b><a href="bioMoby.ontology.TEST-module.html"><code>TEST</code></a></b>
     <li> <b><a href="bioMoby.ontology.Testout-module.html"><code>Testout</code></a></b>
     <li> <b><a href="bioMoby.ontology.Text_plain-module.html"><code>Text_plain</code></a></b>
     <li> <b><a href="bioMoby.ontology.TextBase64-module.html"><code>TextBase64</code></a></b>
@@ -123,6 +141,9 @@
     <li> <b><a href="bioMoby.ontology.TextXml-module.html"><code>TextXml</code></a></b>
     <li> <b><a href="bioMoby.ontology.Trait_Details-module.html"><code>Trait_Details</code></a></b>
     <li> <b><a href="bioMoby.ontology.Tree-module.html"><code>Tree</code></a></b>
+    <li> <b><a href="bioMoby.ontology.TropGENE_ACCESSION-module.html"><code>TropGENE_ACCESSION</code></a></b>
+    <li> <b><a href="bioMoby.ontology.TropGENE_Diversity_Matrix-module.html"><code>TropGENE_Diversity_Matrix</code></a></b>
+    <li> <b><a href="bioMoby.ontology.TropGENE_LOCUS-module.html"><code>TropGENE_LOCUS</code></a></b>
     <li> <b><a href="bioMoby.ontology.VirtualSequence-module.html"><code>VirtualSequence</code></a></b>
     <li> <b><a href="bioMoby.ontology.Wildcard_Query-module.html"><code>Wildcard_Query</code></a></b>
     <li> <b><a href="bioMoby.ontology.WU_BLAST_Text-module.html"><code>WU_BLAST_Text</code></a></b>
@@ -131,6 +152,7 @@
   <ul>
     <li> <b><a href="bioMoby.webservice.Dispatcher-module.html"><code>Dispatcher</code></a></b>
     <li> <b><a href="bioMoby.webservice.Invocators-module.html"><code>Invocators</code></a></b>
+    <li> <b><a href="bioMoby.webservice.TCBioMoby-module.html"><code>TCBioMoby</code></a></b>
   </ul>
   </ul></td></tr>
 </table><br />
@@ -143,13 +165,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyClient-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyClient-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyClient-module.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyClient.Central-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyClient.Central-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyClient.Central-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -54,7 +60,8 @@
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
   <td><code><span class="summary-sig"><a href="bioMoby.mobyClient.Central-class.html#__init__" class="summary-sig-name"><code>__init__</code></a>(<span class=summary-sig-arg>self</span>,
           <span class=summary-sig-arg>url</span>,
-          <span class=summary-sig-arg>ns</span>)</span></code>
+          <span class=summary-sig-arg>ns</span>,
+          <span class=summary-sig-arg>debug</span>)</span></code>
 <br />
 Changes url and ns parameters if you want to use another moby 
 server</td></tr>
@@ -77,7 +84,8 @@
 <table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td>
   <h3><span class="sig"><span class="sig-name">__init__</span>(<span class=sig-arg>self</span>,
           <span class=sig-arg>url</span>=<span class=sig-default>'http://mobycentral.cbr.nrc.ca/cgi-bin/MOBY05/mobycentral...</span>,
-          <span class=sig-arg>ns</span>=<span class=sig-default>'http://mobycentral.cbr.nrc.ca/MOBY/Central'</span>)</span>
+          <span class=sig-arg>ns</span>=<span class=sig-default>'http://mobycentral.cbr.nrc.ca/MOBY/Central'</span>,
+          <span class=sig-arg>debug</span>=<span class=sig-default>False</span>)</span>
     <br /><i>(Constructor)</i>
   </h3>
   Changes url and ns parameters if you want to use another moby 
@@ -106,13 +114,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyClient.Client-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyClient.Client-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyClient.Client-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -54,12 +60,10 @@
 <tr bgcolor="#70b0f0" class="summary">
   <th colspan="2">Method Summary</th></tr>
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
-  <td><code><span class="summary-sig"><a href="bioMoby.mobyClient.Client-class.html#__init__" class="summary-sig-name"><code>__init__</code></a>(<span class=summary-sig-arg>self</span>,
+  <td><code><a name="__init__"></a><span class="summary-sig"><span class="summary-sig-name">__init__</span>(<span class=summary-sig-arg>self</span>,
           <span class=summary-sig-arg>url</span>,
           <span class=summary-sig-arg>ns</span>)</span></code>
-<br />
-Changes url and ns parameters if you want to use another moby 
-server</td></tr>
+</td></tr>
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
   <td><code><span class="summary-sig"><a href="bioMoby.mobyClient.Client-class.html#findService" class="summary-sig-name"><code>findService</code></a>(<span class=summary-sig-arg>self</span>,
           <span class=summary-sig-arg>mobyQuery</span>)</span></code>
@@ -141,23 +145,6 @@
   <th colspan="2">Method Details</th></tr>
 </table>
 
-<a name="__init__"></a>
-<table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td>
-  <h3><span class="sig"><span class="sig-name">__init__</span>(<span class=sig-arg>self</span>,
-          <span class=sig-arg>url</span>=<span class=sig-default>'http://mobycentral.cbr.nrc.ca/cgi-bin/MOBY05/mobycentral...</span>,
-          <span class=sig-arg>ns</span>=<span class=sig-default>'http://mobycentral.cbr.nrc.ca/MOBY/Central'</span>)</span>
-    <br /><i>(Constructor)</i>
-  </h3>
-  Changes url and ns parameters if you want to use another moby 
-  server
-  <dl><dt></dt><dd>
-    <dl><dt><b>Overrides:</b></dt>
-      <dd><a href="bioMoby.mobyClient.Central-class.html#__init__"><code>bioMoby.mobyClient.Central.__init__</code></a> <i>(inherited documentation)</i>
-</dd>
-    </dl>
-  </dd></dl>
-</td></tr></table>
-
 <a name="findService"></a>
 <table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td>
   <h3><span class="sig"><span class="sig-name">findService</span>(<span class=sig-arg>self</span>,
@@ -298,13 +285,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes-module.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -80,13 +86,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyContent-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyContent-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyContent-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -116,13 +122,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyFloat-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyFloat-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyFloat-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -110,13 +116,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyInteger-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyInteger-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyInteger-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -110,13 +116,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyObject-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyObject-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyObject-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -49,6 +55,7 @@
     <a href="bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword-class.html"><code>MobyGlobal_Keyword</code></a>,
     <a href="bioMoby.ontology.GO_Term.MobyGO_Term-class.html"><code>MobyGO_Term</code></a>,
     <a href="bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj-class.html"><code>MobyHaplotyping_Study_obj</code></a>,
+    <a href="bioMoby.ontology.HBond_Pair.MobyHBond_Pair-class.html"><code>MobyHBond_Pair</code></a>,
     <a href="bioMoby.ontology.ICIS_Query.MobyICIS_Query-class.html"><code>MobyICIS_Query</code></a>,
     <a href="bioMoby.ontology.ICIS_Query2.MobyICIS_Query2-class.html"><code>MobyICIS_Query2</code></a>,
     <a href="bioMoby.ontology.ICIS_Query3.MobyICIS_Query3-class.html"><code>MobyICIS_Query3</code></a>,
@@ -57,6 +64,7 @@
     <a href="bioMoby.ontology.Interaction_partner.MobyInteraction_partner-class.html"><code>MobyInteraction_partner</code></a>,
     <a href="bioMoby.ontology.InteractionMethod.MobyInteractionMethod-class.html"><code>MobyInteractionMethod</code></a>,
     <a href="bioMoby.ontology.Interactor.MobyInteractor-class.html"><code>MobyInteractor</code></a>,
+    <a href="bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION-class.html"><code>MobyMGIS_ACCESSION</code></a>,
     <a href="bioMoby.ontology.MMP_Locus.MobyMMP_Locus-class.html"><code>MobyMMP_Locus</code></a>,
     <a href="bioMoby.ontology.MO_Term_Test.MobyMO_Term_Test-class.html"><code>MobyMO_Term_Test</code></a>,
     <a href="bioMoby.ontology.Multi_key_value_pair.MobyMulti_key_value_pair-class.html"><code>MobyMulti_key_value_pair</code></a>,
@@ -70,11 +78,14 @@
     <a href="bioMoby.ontology.Scored_acronym_string.MobyScored_acronym_string-class.html"><code>MobyScored_acronym_string</code></a>,
     <a href="bioMoby.mobyDataTypes.MobySequence-class.html"><code>MobySequence</code></a>,
     <a href="bioMoby.ontology.Simple_key_value_pair.MobySimple_key_value_pair-class.html"><code>MobySimple_key_value_pair</code></a>,
+    <a href="bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION-class.html"><code>MobySINGER_ACCESSION</code></a>,
     <a href="bioMoby.mobyDataTypes.MobyString-class.html"><code>MobyString</code></a>,
     <a href="bioMoby.ontology.Study.MobyStudy-class.html"><code>MobyStudy</code></a>,
     <a href="bioMoby.ontology.TargetP_result.MobyTargetP_result-class.html"><code>MobyTargetP_result</code></a>,
     <a href="bioMoby.ontology.Testout.MobyTestout-class.html"><code>MobyTestout</code></a>,
     <a href="bioMoby.ontology.Trait_Details.MobyTrait_Details-class.html"><code>MobyTrait_Details</code></a>,
+    <a href="bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION-class.html"><code>MobyTropGENE_ACCESSION</code></a>,
+    <a href="bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS-class.html"><code>MobyTropGENE_LOCUS</code></a>,
     <a href="bioMoby.ontology.VirtualSequence.MobyVirtualSequence-class.html"><code>MobyVirtualSequence</code></a>,
     <a href="bioMoby.ontology.Wildcard_Query.MobyWildcard_Query-class.html"><code>MobyWildcard_Query</code></a>,
     <a href="bioMoby.mobyDataTypes.MobyXref-class.html"><code>MobyXref</code></a>,
@@ -162,13 +173,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobySequence-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobySequence-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobySequence-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,7 +63,8 @@
   <td><code><a name="__init__"></a><span class="summary-sig"><span class="summary-sig-name">__init__</span>(<span class=summary-sig-arg>self</span>,
           <span class=summary-sig-arg>sequence</span>,
           <span class=summary-sig-arg>namespace</span>,
-          <span class=summary-sig-arg>id</span>)</span></code>
+          <span class=summary-sig-arg>id</span>,
+          <span class=summary-sig-arg>articleName</span>)</span></code>
 </td></tr>
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
   <td><code><span class="summary-sig"><a href="bioMoby.mobyDataTypes.MobySequence-class.html#fromMoby" class="summary-sig-name"><code>fromMoby</code></a>(<span class=summary-sig-arg>self</span>,
@@ -110,13 +117,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyString-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyString-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyString-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -99,13 +105,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyXref-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyXref-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyXref-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -124,13 +130,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyZmPDB-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyZmPDB-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.MobyZmPDB-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -183,13 +189,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:30 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.Parameter-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.Parameter-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyDataTypes.Parameter-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -104,13 +110,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions-module.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -66,13 +72,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.EInvalidArgument-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.EInvalidArgument-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.EInvalidArgument-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -71,13 +77,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.EInvalidType-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.EInvalidType-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.EInvalidType-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -71,13 +77,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.EMethodRetrieveError-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.EMethodRetrieveError-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.EMethodRetrieveError-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -71,13 +77,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.ENotAWSMethod-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.ENotAWSMethod-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.ENotAWSMethod-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -71,13 +77,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.ETypeMismatch-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.ETypeMismatch-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyExceptions.ETypeMismatch-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -71,13 +77,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyMarshal-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyMarshal-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyMarshal-module.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyMarshal.MobyMarshaller-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyMarshal.MobyMarshaller-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyMarshal.MobyMarshaller-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -48,10 +54,11 @@
 <tr bgcolor="#70b0f0" class="summary">
   <th colspan="2">Method Summary</th></tr>
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
-  <td><code><a name="dumps"></a><span class="summary-sig"><span class="summary-sig-name">dumps</span>(<span class=summary-sig-arg>self</span>,
+  <td><code><span class="summary-sig"><a href="bioMoby.mobyMarshal.MobyMarshaller-class.html#dumps" class="summary-sig-name"><code>dumps</code></a>(<span class=summary-sig-arg>self</span>,
           <span class=summary-sig-arg>value</span>,
           <span class=summary-sig-arg>articleName</span>)</span></code>
-</td></tr>
+<br />
+Serialize the object into a Moby XML object</td></tr>
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
   <td><code><span class="summary-sig"><a href="bioMoby.mobyMarshal.MobyMarshaller-class.html#m_dict" class="summary-sig-name"><code>m_dict</code></a>(<span class=summary-sig-arg>self</span>,
           <span class=summary-sig-arg>value</span>,
@@ -115,6 +122,17 @@
   <th colspan="2">Method Details</th></tr>
 </table>
 
+<a name="dumps"></a>
+<table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td>
+  <h3><span class="sig"><span class="sig-name">dumps</span>(<span class=sig-arg>self</span>,
+          <span class=sig-arg>value</span>,
+          <span class=sig-arg>articleName</span>=<span class=sig-default>''</span>)</span>
+  </h3>
+  Serialize the object into a Moby XML object
+  <dl><dt></dt><dd>
+  </dd></dl>
+</td></tr></table>
+
 <a name="m_dict"></a>
 <table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td>
   <h3><span class="sig"><span class="sig-name">m_dict</span>(<span class=sig-arg>self</span>,
@@ -208,13 +226,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:30 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyMarshal.MobyUnmarshaller-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyMarshal.MobyUnmarshaller-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyMarshal.MobyUnmarshaller-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -48,9 +54,10 @@
 <tr bgcolor="#70b0f0" class="summary">
   <th colspan="2">Method Summary</th></tr>
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
-  <td><code><a name="loads"></a><span class="summary-sig"><span class="summary-sig-name">loads</span>(<span class=summary-sig-arg>self</span>,
+  <td><code><span class="summary-sig"><a href="bioMoby.mobyMarshal.MobyUnmarshaller-class.html#loads" class="summary-sig-name"><code>loads</code></a>(<span class=summary-sig-arg>self</span>,
           <span class=summary-sig-arg>xml</span>)</span></code>
-</td></tr>
+<br />
+Deserializes an xml string and return a bioMoby-Python object</td></tr>
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
   <td><code><span class="summary-sig"><a href="bioMoby.mobyMarshal.MobyUnmarshaller-class.html#m_Collection" class="summary-sig-name"><code>m_Collection</code></a>(<span class=summary-sig-arg>self</span>,
           <span class=summary-sig-arg>value</span>)</span></code>
@@ -93,6 +100,16 @@
   <th colspan="2">Method Details</th></tr>
 </table>
 
+<a name="loads"></a>
+<table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td>
+  <h3><span class="sig"><span class="sig-name">loads</span>(<span class=sig-arg>self</span>,
+          <span class=sig-arg>xml</span>)</span>
+  </h3>
+  Deserializes an xml string and return a bioMoby-Python object
+  <dl><dt></dt><dd>
+  </dd></dl>
+</td></tr></table>
+
 <a name="m_Collection"></a>
 <table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td>
   <h3><span class="sig"><span class="sig-name">m_Collection</span>(<span class=sig-arg>self</span>,
@@ -165,13 +182,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister-module.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -67,13 +73,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.GeneralInformations-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.GeneralInformations-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.GeneralInformations-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -154,13 +160,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.Namespace-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.Namespace-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.Namespace-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -136,13 +142,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.ObjectClass-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.ObjectClass-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.ObjectClass-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -138,13 +144,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.RegistrationObject-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.RegistrationObject-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.RegistrationObject-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -121,13 +127,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.ServiceType-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.ServiceType-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyRegister.ServiceType-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -158,13 +164,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:30 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService-module.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -67,13 +73,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.Service-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.Service-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.Service-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -70,7 +76,8 @@
   <td><code><span class="summary-sig"><a href="bioMoby.mobyService.Service-class.html#execute" class="summary-sig-name"><code>execute</code></a>(<span class=summary-sig-arg>self</span>,
           <span class=summary-sig-arg>query</span>,
           <span class=summary-sig-arg>method</span>,
-          <span class=summary-sig-arg>returnXml</span>)</span></code>
+          <span class=summary-sig-arg>returnXml</span>,
+          <span class=summary-sig-arg>debug</span>)</span></code>
 <br />
 Executes the web service v0.5: return either the XML form or try to 
 unmarshall the result and return a MobyContent Object</td></tr>
@@ -82,7 +89,8 @@
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
   <td><code><span class="summary-sig"><a href="bioMoby.mobyService.Service-class.html#register" class="summary-sig-name"><code>register</code></a>(<span class=summary-sig-arg>self</span>)</span></code>
 <br />
-Register the service on the Moby server</td></tr>
+Register the service on the Moby server has been added here a code to 
+verify that signatureURL is not empty :)</td></tr>
 </table><br />
 
 
@@ -151,7 +159,8 @@
   <h3><span class="sig"><span class="sig-name">execute</span>(<span class=sig-arg>self</span>,
           <span class=sig-arg>query</span>,
           <span class=sig-arg>method</span>=<span class=sig-default>''</span>,
-          <span class=sig-arg>returnXml</span>=<span class=sig-default>True</span>)</span>
+          <span class=sig-arg>returnXml</span>=<span class=sig-default>True</span>,
+          <span class=sig-arg>debug</span>=<span class=sig-default>False</span>)</span>
   </h3>
   Executes the web service v0.5: return either the XML form or try to 
   unmarshall the result and return a MobyContent Object
@@ -173,7 +182,8 @@
 <table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td>
   <h3><span class="sig"><span class="sig-name">register</span>(<span class=sig-arg>self</span>)</span>
   </h3>
-  Register the service on the Moby server
+  Register the service on the Moby server has been added here a code 
+  to verify that signatureURL is not empty :)
   <dl><dt></dt><dd>
   </dd></dl>
 </td></tr></table>
@@ -187,13 +197,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.ServiceArticle-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.ServiceArticle-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.ServiceArticle-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -113,13 +119,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.ServiceList-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.ServiceList-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.ServiceList-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -204,13 +210,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.ServiceQuery-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.ServiceQuery-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.ServiceQuery-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -128,13 +134,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.ServiceSecondary-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.ServiceSecondary-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.mobyService.ServiceSecondary-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -116,13 +122,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology-module.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -51,6 +57,10 @@
 <li> <b><a href="bioMoby.ontology.B64_Encoded_PNG-module.html"><code>B64_Encoded_PNG</code></a></b>
 <li> <b><a href="bioMoby.ontology.B64_Encoded_Postscript-module.html"><code>B64_Encoded_Postscript</code></a></b>
 <li> <b><a href="bioMoby.ontology.BasicGFFSequenceFeature-module.html"><code>BasicGFFSequenceFeature</code></a></b>
+<li> <b><a href="bioMoby.ontology.ClustalAlnFormattedText-module.html"><code>ClustalAlnFormattedText</code></a></b>
+<li> <b><a href="bioMoby.ontology.CommentedAASequence-module.html"><code>CommentedAASequence</code></a></b>
+<li> <b><a href="bioMoby.ontology.CommentedDNASequence-module.html"><code>CommentedDNASequence</code></a></b>
+<li> <b><a href="bioMoby.ontology.CommentedRNASequence-module.html"><code>CommentedRNASequence</code></a></b>
 <li> <b><a href="bioMoby.ontology.DateTime-module.html"><code>DateTime</code></a></b>
 <li> <b><a href="bioMoby.ontology.Decypher_Text-module.html"><code>Decypher_Text</code></a></b>
 <li> <b><a href="bioMoby.ontology.DNASequence-module.html"><code>DNASequence</code></a></b>
@@ -58,6 +68,8 @@
 <li> <b><a href="bioMoby.ontology.Edge-module.html"><code>Edge</code></a></b>
 <li> <b><a href="bioMoby.ontology.EmblFlatfile-module.html"><code>EmblFlatfile</code></a></b>
 <li> <b><a href="bioMoby.ontology.FASTA-module.html"><code>FASTA</code></a></b>
+<li> <b><a href="bioMoby.ontology.FASTA_AA-module.html"><code>FASTA_AA</code></a></b>
+<li> <b><a href="bioMoby.ontology.FASTA_NA-module.html"><code>FASTA_NA</code></a></b>
 <li> <b><a href="bioMoby.ontology.GenbankFlatfile-module.html"><code>GenbankFlatfile</code></a></b>
 <li> <b><a href="bioMoby.ontology.GenericSequence-module.html"><code>GenericSequence</code></a></b>
 <li> <b><a href="bioMoby.ontology.GeneticElement-module.html"><code>GeneticElement</code></a></b>
@@ -71,6 +83,7 @@
 <li> <b><a href="bioMoby.ontology.Global_Keyword-module.html"><code>Global_Keyword</code></a></b>
 <li> <b><a href="bioMoby.ontology.GO_Term-module.html"><code>GO_Term</code></a></b>
 <li> <b><a href="bioMoby.ontology.Haplotyping_Study_obj-module.html"><code>Haplotyping_Study_obj</code></a></b>
+<li> <b><a href="bioMoby.ontology.HBond_Pair-module.html"><code>HBond_Pair</code></a></b>
 <li> <b><a href="bioMoby.ontology.HCA_picture-module.html"><code>HCA_picture</code></a></b>
 <li> <b><a href="bioMoby.ontology.ICIS_Query-module.html"><code>ICIS_Query</code></a></b>
 <li> <b><a href="bioMoby.ontology.ICIS_Query2-module.html"><code>ICIS_Query2</code></a></b>
@@ -80,12 +93,15 @@
 <li> <b><a href="bioMoby.ontology.Interaction_partner-module.html"><code>Interaction_partner</code></a></b>
 <li> <b><a href="bioMoby.ontology.InteractionMethod-module.html"><code>InteractionMethod</code></a></b>
 <li> <b><a href="bioMoby.ontology.Interactor-module.html"><code>Interactor</code></a></b>
+<li> <b><a href="bioMoby.ontology.MEME_Text-module.html"><code>MEME_Text</code></a></b>
+<li> <b><a href="bioMoby.ontology.MGIS_ACCESSION-module.html"><code>MGIS_ACCESSION</code></a></b>
 <li> <b><a href="bioMoby.ontology.MMP_Locus-module.html"><code>MMP_Locus</code></a></b>
 <li> <b><a href="bioMoby.ontology.MO_Term_Test-module.html"><code>MO_Term_Test</code></a></b>
 <li> <b><a href="bioMoby.ontology.Multi_key_value_pair-module.html"><code>Multi_key_value_pair</code></a></b>
 <li> <b><a href="bioMoby.ontology.MyTree-module.html"><code>MyTree</code></a></b>
 <li> <b><a href="bioMoby.ontology.NCBI_BLAST_Text-module.html"><code>NCBI_BLAST_Text</code></a></b>
 <li> <b><a href="bioMoby.ontology.NCBI_Blast_XML-module.html"><code>NCBI_Blast_XML</code></a></b>
+<li> <b><a href="bioMoby.ontology.NCBI_MEME_Text-module.html"><code>NCBI_MEME_Text</code></a></b>
 <li> <b><a href="bioMoby.ontology.NucleotideSequence-module.html"><code>NucleotideSequence</code></a></b>
 <li> <b><a href="bioMoby.ontology.PDBFormattedText-module.html"><code>PDBFormattedText</code></a></b>
 <li> <b><a href="bioMoby.ontology.PDGJOB-module.html"><code>PDGJOB</code></a></b>
@@ -102,10 +118,12 @@
 <li> <b><a href="bioMoby.ontology.Simple_key_value_pair-module.html"><code>Simple_key_value_pair</code></a></b>
 <li> <b><a href="bioMoby.ontology.SimpleAnnotatedGIFImage-module.html"><code>SimpleAnnotatedGIFImage</code></a></b>
 <li> <b><a href="bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html"><code>SimpleAnnotatedJPEGImage</code></a></b>
+<li> <b><a href="bioMoby.ontology.SINGER_ACCESSION-module.html"><code>SINGER_ACCESSION</code></a></b>
 <li> <b><a href="bioMoby.ontology.Snp_allele-module.html"><code>Snp_allele</code></a></b>
 <li> <b><a href="bioMoby.ontology.Snp_genotype-module.html"><code>Snp_genotype</code></a></b>
 <li> <b><a href="bioMoby.ontology.Study-module.html"><code>Study</code></a></b>
 <li> <b><a href="bioMoby.ontology.TargetP_result-module.html"><code>TargetP_result</code></a></b>
+<li> <b><a href="bioMoby.ontology.TEST-module.html"><code>TEST</code></a></b>
 <li> <b><a href="bioMoby.ontology.Testout-module.html"><code>Testout</code></a></b>
 <li> <b><a href="bioMoby.ontology.Text_plain-module.html"><code>Text_plain</code></a></b>
 <li> <b><a href="bioMoby.ontology.TextBase64-module.html"><code>TextBase64</code></a></b>
@@ -116,6 +134,9 @@
 <li> <b><a href="bioMoby.ontology.TextXml-module.html"><code>TextXml</code></a></b>
 <li> <b><a href="bioMoby.ontology.Trait_Details-module.html"><code>Trait_Details</code></a></b>
 <li> <b><a href="bioMoby.ontology.Tree-module.html"><code>Tree</code></a></b>
+<li> <b><a href="bioMoby.ontology.TropGENE_ACCESSION-module.html"><code>TropGENE_ACCESSION</code></a></b>
+<li> <b><a href="bioMoby.ontology.TropGENE_Diversity_Matrix-module.html"><code>TropGENE_Diversity_Matrix</code></a></b>
+<li> <b><a href="bioMoby.ontology.TropGENE_LOCUS-module.html"><code>TropGENE_LOCUS</code></a></b>
 <li> <b><a href="bioMoby.ontology.VirtualSequence-module.html"><code>VirtualSequence</code></a></b>
 <li> <b><a href="bioMoby.ontology.Wildcard_Query-module.html"><code>Wildcard_Query</code></a></b>
 <li> <b><a href="bioMoby.ontology.WU_BLAST_Text-module.html"><code>WU_BLAST_Text</code></a></b>
@@ -130,13 +151,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.AGI_LocusCode-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.AGI_LocusCode-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.AGI_LocusCode-module.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -58,13 +64,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.AGI_LocusCode.MobyAGI_LocusCode-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.AGI_LocusCode.MobyAGI_LocusCode-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.AGI_LocusCode.MobyAGI_LocusCode-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -113,13 +119,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Allele_freq-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Allele_freq-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Allele_freq-module.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Allele_freq.MobyAllele_freq-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Allele_freq.MobyAllele_freq-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Allele_freq.MobyAllele_freq-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -90,13 +96,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.AminoAcidSequence-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.AminoAcidSequence-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.AminoAcidSequence-module.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.AminoAcidSequence.MobyAminoAcidSequence-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.AminoAcidSequence.MobyAminoAcidSequence-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.AminoAcidSequence.MobyAminoAcidSequence-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -48,6 +54,10 @@
                          <b>MobyAminoAcidSequence</b>
 </pre><br />
 
+<dl><dt><b>Known Subclasses:</b></dt>
+<dd>
+    <a href="bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence-class.html"><code>MobyCommentedAASequence</code></a></dd></dl>
+
 <hr/>
 
 Description: Lightweight representation an amino acid sequence Author: 
@@ -117,13 +127,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_Encoded_PNG-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_Encoded_PNG-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_Encoded_PNG-module.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_Encoded_PNG.MobyB64_Encoded_PNG-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_Encoded_PNG.MobyB64_Encoded_PNG-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_Encoded_PNG.MobyB64_Encoded_PNG-class.html	2004/12/09 14:41:33	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -116,13 +122,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_Encoded_Postscript-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_Encoded_Postscript-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_Encoded_Postscript-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_Encoded_Postscript.MobyB64_Encoded_Postscript-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_Encoded_Postscript.MobyB64_Encoded_Postscript-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_Encoded_Postscript.MobyB64_Encoded_Postscript-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -120,13 +126,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_PDB-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_PDB-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_PDB-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_PDB.MobyB64_encoded_PDB-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_PDB.MobyB64_encoded_PDB-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_PDB.MobyB64_encoded_PDB-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -116,13 +122,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_gif-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_gif-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_gif-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_gif.MobyB64_encoded_gif-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_gif.MobyB64_encoded_gif-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_gif.MobyB64_encoded_gif-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -120,13 +126,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_jpeg-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_jpeg-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_jpeg-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_jpeg.MobyB64_encoded_jpeg-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_jpeg.MobyB64_encoded_jpeg-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.B64_encoded_jpeg.MobyB64_encoded_jpeg-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -120,13 +126,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.BasicGFFSequenceFeature-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.BasicGFFSequenceFeature-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.BasicGFFSequenceFeature-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -58,13 +64,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -123,13 +129,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DNASequence-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DNASequence-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DNASequence-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DNASequence.MobyDNASequence-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DNASequence.MobyDNASequence-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DNASequence.MobyDNASequence-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -52,6 +58,7 @@
 
 <dl><dt><b>Known Subclasses:</b></dt>
 <dd>
+    <a href="bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence-class.html"><code>MobyCommentedDNASequence</code></a>,
     <a href="bioMoby.ontology.DNASequenceWithGFFFeatures.MobyDNASequenceWithGFFFeatures-class.html"><code>MobyDNASequenceWithGFFFeatures</code></a></dd></dl>
 
 <hr/>
@@ -123,13 +130,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DNASequenceWithGFFFeatures-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DNASequenceWithGFFFeatures-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DNASequenceWithGFFFeatures-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -55,13 +61,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DNASequenceWithGFFFeatures.MobyDNASequenceWithGFFFeatures-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DNASequenceWithGFFFeatures.MobyDNASequenceWithGFFFeatures-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DNASequenceWithGFFFeatures.MobyDNASequenceWithGFFFeatures-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -125,13 +131,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DateTime-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DateTime-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DateTime-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DateTime.MobyDateTime-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DateTime.MobyDateTime-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.DateTime.MobyDateTime-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -114,13 +120,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Decypher_Text-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Decypher_Text-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Decypher_Text-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Decypher_Text.MobyDecypher_Text-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Decypher_Text.MobyDecypher_Text-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Decypher_Text.MobyDecypher_Text-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -119,13 +125,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Edge-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Edge-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Edge-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Edge.MobyEdge-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Edge.MobyEdge-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Edge.MobyEdge-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -114,13 +120,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.EmblFlatfile-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.EmblFlatfile-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.EmblFlatfile-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.EmblFlatfile.MobyEmblFlatfile-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.EmblFlatfile.MobyEmblFlatfile-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.EmblFlatfile.MobyEmblFlatfile-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -118,13 +124,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.FASTA-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.FASTA-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.FASTA-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.FASTA.MobyFASTA-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.FASTA.MobyFASTA-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.FASTA.MobyFASTA-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -50,6 +56,11 @@
                         <b>MobyFASTA</b>
 </pre><br />
 
+<dl><dt><b>Known Subclasses:</b></dt>
+<dd>
+    <a href="bioMoby.ontology.FASTA_AA.MobyFASTA_AA-class.html"><code>MobyFASTA_AA</code></a>,
+    <a href="bioMoby.ontology.FASTA_NA.MobyFASTA_NA-class.html"><code>MobyFASTA_NA</code></a></dd></dl>
+
 <hr/>
 
 Description: FASTA formatted sequence Author: www.sdsc.edu Contact: 
@@ -118,13 +129,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF-module.html	2004/12/09 14:41:34	1.3
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:30 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF.MobyGFF-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF.MobyGFF-class.html	2004/12/08 11:15:26	1.2
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -125,13 +131,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF1-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF1-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF1-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:30 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF1.MobyGFF1-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF1.MobyGFF1-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF1.MobyGFF1-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -121,13 +127,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF2-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF2-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF2-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:30 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF2.MobyGFF2-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF2.MobyGFF2-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF2.MobyGFF2-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -121,13 +127,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF2_5-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF2_5-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF2_5-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF2_5.MobyGFF2_5-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF2_5.MobyGFF2_5-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF2_5.MobyGFF2_5-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -121,13 +127,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:30 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF3-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF3-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF3-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:30 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF3.MobyGFF3-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF3.MobyGFF3-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GFF3.MobyGFF3-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -121,13 +127,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GO_Term-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GO_Term-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GO_Term-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GO_Term.MobyGO_Term-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GO_Term.MobyGO_Term-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GO_Term.MobyGO_Term-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -113,13 +119,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GenbankFlatfile-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GenbankFlatfile-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GenbankFlatfile-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GenbankFlatfile.MobyGenbankFlatfile-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GenbankFlatfile.MobyGenbankFlatfile-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GenbankFlatfile.MobyGenbankFlatfile-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -118,13 +124,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GenericSequence-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GenericSequence-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GenericSequence-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GenericSequence.MobyGenericSequence-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GenericSequence.MobyGenericSequence-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GenericSequence.MobyGenericSequence-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -123,13 +129,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GeneticElement-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GeneticElement-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GeneticElement-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GeneticElement.MobyGeneticElement-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GeneticElement.MobyGeneticElement-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.GeneticElement.MobyGeneticElement-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -112,13 +118,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Germplasm_Details-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Germplasm_Details-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Germplasm_Details-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
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-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
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retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Germplasm_Details.MobyGermplasm_Details-class.html	2004/12/08 11:15:26	1.2
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
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+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
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+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Germplasm_List-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Germplasm_List-module.html	2004/12/08 11:15:26	1.2
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Germplasm_List.MobyGermplasm_List-class.html,v
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retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Germplasm_List.MobyGermplasm_List-class.html	2004/12/08 11:15:26	1.2
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@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Global_Keyword-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Global_Keyword-module.html	2004/12/08 11:15:26	1.2
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
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   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -111,13 +117,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.HCA_picture-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.HCA_picture-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.HCA_picture-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.HCA_picture.MobyHCA_picture-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.HCA_picture.MobyHCA_picture-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.HCA_picture.MobyHCA_picture-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -118,13 +124,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Haplotyping_Study_obj-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Haplotyping_Study_obj-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Haplotyping_Study_obj-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -111,13 +117,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query-module.html	2004/12/09 14:41:34	1.3
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query.MobyICIS_Query-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query.MobyICIS_Query-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query.MobyICIS_Query-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -114,13 +120,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query2-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query2-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query2-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -55,13 +61,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query2.MobyICIS_Query2-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query2.MobyICIS_Query2-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query2.MobyICIS_Query2-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -117,13 +123,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query3-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query3-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query3-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -55,13 +61,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query3.MobyICIS_Query3-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query3.MobyICIS_Query3-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.ICIS_Query3.MobyICIS_Query3-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -116,13 +122,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.IntAct_XML-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.IntAct_XML-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.IntAct_XML-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.IntAct_XML.MobyIntAct_XML-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.IntAct_XML.MobyIntAct_XML-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.IntAct_XML.MobyIntAct_XML-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -116,13 +122,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interaction-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interaction-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interaction-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -55,13 +61,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interaction.MobyInteraction-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interaction.MobyInteraction-class.html	2004/12/08 11:15:26	1.2
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -115,13 +121,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.InteractionMethod-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.InteractionMethod-module.html	2004/12/08 11:15:26	1.2
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.InteractionMethod.MobyInteractionMethod-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.InteractionMethod.MobyInteractionMethod-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.InteractionMethod.MobyInteractionMethod-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -114,13 +120,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interaction_partner-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interaction_partner-module.html	2004/12/08 11:15:26	1.2
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interaction_partner.MobyInteraction_partner-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interaction_partner.MobyInteraction_partner-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interaction_partner.MobyInteraction_partner-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -114,13 +120,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interactor-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interactor-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interactor-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interactor.MobyInteractor-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interactor.MobyInteractor-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Interactor.MobyInteractor-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -112,13 +118,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MMP_Locus-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MMP_Locus-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MMP_Locus-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MMP_Locus.MobyMMP_Locus-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MMP_Locus.MobyMMP_Locus-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MMP_Locus.MobyMMP_Locus-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -111,13 +117,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MO_Term_Test-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MO_Term_Test-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MO_Term_Test-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
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retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MO_Term_Test.MobyMO_Term_Test-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MO_Term_Test.MobyMO_Term_Test-class.html	2004/12/09 14:41:34	1.3
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -116,13 +122,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
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+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
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retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Multi_key_value_pair-module.html	2004/12/08 11:15:26	1.2
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
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retrieving revision 1.3
diff -u -r1.2 -r1.3
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@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MyTree-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MyTree-module.html	2004/12/08 11:15:26	1.2
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@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MyTree.MobyMyTree-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MyTree.MobyMyTree-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.MyTree.MobyMyTree-class.html	2004/12/09 14:41:34	1.3
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -118,13 +124,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NCBI_BLAST_Text-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NCBI_BLAST_Text-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NCBI_BLAST_Text-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -118,13 +124,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NCBI_Blast_XML-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NCBI_Blast_XML-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NCBI_Blast_XML-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -116,13 +122,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NucleotideSequence-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NucleotideSequence-module.html	2004/12/08 11:15:26	1.2
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence-class.html	2004/12/08 11:15:26	1.2
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -123,13 +129,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PDBFormattedText-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PDBFormattedText-module.html	2004/12/08 11:15:26	1.2
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@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
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   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PDBFormattedText.MobyPDBFormattedText-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PDBFormattedText.MobyPDBFormattedText-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PDBFormattedText.MobyPDBFormattedText-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -118,13 +124,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PDGJOB-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PDGJOB-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PDGJOB-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PDGJOB.MobyPDGJOB-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PDGJOB.MobyPDGJOB-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PDGJOB.MobyPDGJOB-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -117,13 +123,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PhenotypeDescription-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PhenotypeDescription-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PhenotypeDescription-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PhenotypeDescription.MobyPhenotypeDescription-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PhenotypeDescription.MobyPhenotypeDescription-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PhenotypeDescription.MobyPhenotypeDescription-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -113,13 +119,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PubMedMEDLINE-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PubMedMEDLINE-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PubMedMEDLINE-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PubMedMEDLINE.MobyPubMedMEDLINE-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PubMedMEDLINE.MobyPubMedMEDLINE-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.PubMedMEDLINE.MobyPubMedMEDLINE-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -119,13 +125,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.RNASequence-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.RNASequence-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.RNASequence-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.RNASequence.MobyRNASequence-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.RNASequence.MobyRNASequence-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.RNASequence.MobyRNASequence-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -50,6 +56,10 @@
                              <b>MobyRNASequence</b>
 </pre><br />
 
+<dl><dt><b>Known Subclasses:</b></dt>
+<dd>
+    <a href="bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence-class.html"><code>MobyCommentedRNASequence</code></a></dd></dl>
+
 <hr/>
 
 Description: Lightweight representation an RNA sequence Author: 
@@ -119,13 +129,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonMotifID-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonMotifID-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonMotifID-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonMotifID.MobySchematikonMotifID-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonMotifID.MobySchematikonMotifID-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonMotifID.MobySchematikonMotifID-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -114,13 +120,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonMotifSupport-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonMotifSupport-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonMotifSupport-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonMotifSupport.MobySchematikonMotifSupport-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonMotifSupport.MobySchematikonMotifSupport-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonMotifSupport.MobySchematikonMotifSupport-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -113,13 +119,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonSegmentAttributes-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonSegmentAttributes-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonSegmentAttributes-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -59,13 +65,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:30 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonSegmentAttributes.MobySchematikonSegmentAttributes-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonSegmentAttributes.MobySchematikonSegmentAttributes-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonSegmentAttributes.MobySchematikonSegmentAttributes-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -119,13 +125,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonSegmentID-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonSegmentID-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonSegmentID-module.html	2004/12/09 14:41:34	1.3
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonSegmentID.MobySchematikonSegmentID-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonSegmentID.MobySchematikonSegmentID-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonSegmentID.MobySchematikonSegmentID-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -116,13 +122,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonStructureAnnotation-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonStructureAnnotation-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonStructureAnnotation-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonStructureAnnotation.MobySchematikonStructureAnnotation-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonStructureAnnotation.MobySchematikonStructureAnnotation-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonStructureAnnotation.MobySchematikonStructureAnnotation-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -116,13 +122,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonVorocodeName-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonVorocodeName-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonVorocodeName-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonVorocodeName.MobySchematikonVorocodeName-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonVorocodeName.MobySchematikonVorocodeName-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SchematikonVorocodeName.MobySchematikonVorocodeName-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -113,13 +119,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Scored_acronym_string-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Scored_acronym_string-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Scored_acronym_string-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Scored_acronym_string.MobyScored_acronym_string-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Scored_acronym_string.MobyScored_acronym_string-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Scored_acronym_string.MobyScored_acronym_string-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -115,13 +121,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SimpleAnnotatedGIFImage-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SimpleAnnotatedGIFImage-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SimpleAnnotatedGIFImage-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SimpleAnnotatedGIFImage.MobySimpleAnnotatedGIFImage-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SimpleAnnotatedGIFImage.MobySimpleAnnotatedGIFImage-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SimpleAnnotatedGIFImage.MobySimpleAnnotatedGIFImage-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -119,13 +125,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SimpleAnnotatedJPEGImage.MobySimpleAnnotatedJPEGImage-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SimpleAnnotatedJPEGImage.MobySimpleAnnotatedJPEGImage-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.SimpleAnnotatedJPEGImage.MobySimpleAnnotatedJPEGImage-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -119,13 +125,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Simple_key_value_pair-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Simple_key_value_pair-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Simple_key_value_pair-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Simple_key_value_pair.MobySimple_key_value_pair-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Simple_key_value_pair.MobySimple_key_value_pair-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Simple_key_value_pair.MobySimple_key_value_pair-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -114,13 +120,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Snp_allele-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Snp_allele-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Snp_allele-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Snp_allele.MobySnp_allele-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Snp_allele.MobySnp_allele-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Snp_allele.MobySnp_allele-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -87,13 +93,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Snp_genotype-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Snp_genotype-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Snp_genotype-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Snp_genotype.MobySnp_genotype-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Snp_genotype.MobySnp_genotype-class.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Snp_genotype.MobySnp_genotype-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -88,13 +94,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Study-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Study-module.html	2004/12/08 11:15:26	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Study-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Study.MobyStudy-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Study.MobyStudy-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Study.MobyStudy-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -114,13 +120,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TargetP_result-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TargetP_result-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TargetP_result-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -57,13 +63,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TargetP_result.MobyTargetP_result-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TargetP_result.MobyTargetP_result-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TargetP_result.MobyTargetP_result-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -117,13 +123,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Testout-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Testout-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Testout-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Testout.MobyTestout-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Testout.MobyTestout-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Testout.MobyTestout-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -115,13 +121,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextBase64-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextBase64-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextBase64-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextBase64.MobyTextBase64-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextBase64.MobyTextBase64-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextBase64.MobyTextBase64-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -122,13 +128,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextFormatted-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextFormatted-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextFormatted-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextFormatted.MobyTextFormatted-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextFormatted.MobyTextFormatted-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextFormatted.MobyTextFormatted-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -50,16 +56,21 @@
 
 <dl><dt><b>Known Subclasses:</b></dt>
 <dd>
+    <a href="bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText-class.html"><code>MobyClustalAlnFormattedText</code></a>,
     <a href="bioMoby.ontology.Decypher_Text.MobyDecypher_Text-class.html"><code>MobyDecypher_Text</code></a>,
     <a href="bioMoby.ontology.EmblFlatfile.MobyEmblFlatfile-class.html"><code>MobyEmblFlatfile</code></a>,
     <a href="bioMoby.ontology.FASTA.MobyFASTA-class.html"><code>MobyFASTA</code></a>,
     <a href="bioMoby.ontology.GenbankFlatfile.MobyGenbankFlatfile-class.html"><code>MobyGenbankFlatfile</code></a>,
     <a href="bioMoby.ontology.GFF.MobyGFF-class.html"><code>MobyGFF</code></a>,
+    <a href="bioMoby.ontology.MEME_Text.MobyMEME_Text-class.html"><code>MobyMEME_Text</code></a>,
     <a href="bioMoby.ontology.MyTree.MobyMyTree-class.html"><code>MobyMyTree</code></a>,
     <a href="bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text-class.html"><code>MobyNCBI_BLAST_Text</code></a>,
+    <a href="bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text-class.html"><code>MobyNCBI_MEME_Text</code></a>,
     <a href="bioMoby.ontology.PDBFormattedText.MobyPDBFormattedText-class.html"><code>MobyPDBFormattedText</code></a>,
     <a href="bioMoby.ontology.PubMedMEDLINE.MobyPubMedMEDLINE-class.html"><code>MobyPubMedMEDLINE</code></a>,
+    <a href="bioMoby.ontology.TEST.MobyTEST-class.html"><code>MobyTEST</code></a>,
     <a href="bioMoby.ontology.Tree.MobyTree-class.html"><code>MobyTree</code></a>,
+    <a href="bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix-class.html"><code>MobyTropGENE_Diversity_Matrix</code></a>,
     <a href="bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text-class.html"><code>MobyWU_BLAST_Text</code></a></dd></dl>
 
 <hr/>
@@ -130,13 +141,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextHtml-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextHtml-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextHtml-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextHtml.MobyTextHtml-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextHtml.MobyTextHtml-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextHtml.MobyTextHtml-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -114,13 +120,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextPlain-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextPlain-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextPlain-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextPlain.MobyTextPlain-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextPlain.MobyTextPlain-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextPlain.MobyTextPlain-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -118,13 +124,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextUuencoded-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextUuencoded-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextUuencoded-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextUuencoded.MobyTextUuencoded-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextUuencoded.MobyTextUuencoded-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextUuencoded.MobyTextUuencoded-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -114,13 +120,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextXml-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextXml-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextXml-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextXml.MobyTextXml-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextXml.MobyTextXml-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.TextXml.MobyTextXml-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -119,13 +125,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Text_plain-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Text_plain-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Text_plain-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
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retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Text_plain.MobyText_plain-class.html	2004/12/08 11:15:27	1.2
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@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -114,13 +120,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Trait_Details-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Trait_Details-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Trait_Details-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Trait_Details.MobyTrait_Details-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Trait_Details.MobyTrait_Details-class.html	2004/12/08 11:15:27	1.2
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@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -116,13 +122,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Tree-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Tree-module.html	2004/12/08 11:15:27	1.2
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@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Tree.MobyTree-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Tree.MobyTree-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Tree.MobyTree-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
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     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -118,13 +124,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.VirtualSequence-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.VirtualSequence-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.VirtualSequence-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.VirtualSequence.MobyVirtualSequence-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.VirtualSequence.MobyVirtualSequence-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.VirtualSequence.MobyVirtualSequence-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -119,13 +125,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.WU_BLAST_Text-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.WU_BLAST_Text-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.WU_BLAST_Text-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -118,13 +124,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Wildcard_Query-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Wildcard_Query-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Wildcard_Query-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -56,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Wildcard_Query.MobyWildcard_Query-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Wildcard_Query.MobyWildcard_Query-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.ontology.Wildcard_Query.MobyWildcard_Query-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -114,13 +120,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -44,6 +50,7 @@
   <tr><td><ul>
 <li> <b><a href="bioMoby.webservice.Dispatcher-module.html"><code>Dispatcher</code></a></b>
 <li> <b><a href="bioMoby.webservice.Invocators-module.html"><code>Invocators</code></a></b>
+<li> <b><a href="bioMoby.webservice.TCBioMoby-module.html"><code>TCBioMoby</code></a></b>
   </ul></td></tr>
 </table><br />
 
@@ -55,13 +62,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -43,6 +49,10 @@
 <tr bgcolor="#70b0f0" class="summary">
   <th colspan="2">Classes</th></tr>
 <tr><td width="15%">
+  <b><a href="bioMoby.webservice.Dispatcher.AbstractDispatcher-class.html"><code>AbstractDispatcher</code></a></b></td>
+  <td>Subclass this one to create your own dispatcher class a Dispatcher 
+class must have a execute method</td></tr>
+<tr><td width="15%">
   <b><a href="bioMoby.webservice.Dispatcher.Dispatcher-class.html"><code>Dispatcher</code></a></b></td>
   <td>All Queries in the MobyContent Object are splitted and executed</td></tr>
 <tr><td width="15%">
@@ -52,6 +62,12 @@
   <b><a href="bioMoby.webservice.Dispatcher.MultiThread-class.html"><code>MultiThread</code></a></b></td>
   <td>Several threads</td></tr>
 <tr><td width="15%">
+  <b><a href="bioMoby.webservice.Dispatcher.PBSDispatcher-class.html"><code>PBSDispatcher</code></a></b></td>
+  <td>Dispatcher for PBS jobs</td></tr>
+<tr><td width="15%">
+  <b><a href="bioMoby.webservice.Dispatcher.SimpleDispatcher-class.html"><code>SimpleDispatcher</code></a></b></td>
+  <td>A simple dispatcher, without execute method</td></tr>
+<tr><td width="15%">
   <b><a href="bioMoby.webservice.Dispatcher.SingleThread-class.html"><code>SingleThread</code></a></b></td>
   <td>Definition of a single Thread</td></tr>
 </table><br />
@@ -74,13 +90,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.Dispatcher-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.Dispatcher-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.Dispatcher-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -38,6 +44,12 @@
 <!-- =========== START OF CLASS DESCRIPTION =========== -->
 <h2 class="class">Class Dispatcher</h2>
 
+<pre class="base-tree">
+<a href="bioMoby.webservice.Dispatcher.AbstractDispatcher-class.html"><code>AbstractDispatcher</code></a> --+
+                     |
+                    <b>Dispatcher</b>
+</pre><br />
+
 <hr/>
 
 All Queries in the MobyContent Object are splitted and executed
@@ -92,6 +104,9 @@
   [queryData]--&gt;(&quot;commandName&quot;,&quot;commandArgs&quot;, 
   [&quot;tempfiles&quot;])
   <dl><dt></dt><dd>
+    <dl><dt><b>Overrides:</b></dt>
+      <dd><a href="bioMoby.webservice.Dispatcher.AbstractDispatcher-class.html#__init__"><code>bioMoby.webservice.Dispatcher.AbstractDispatcher.__init__</code></a></dd>
+    </dl>
   </dd></dl>
 </td></tr></table>
 
@@ -103,6 +118,9 @@
   Execute the queries with a pool of threads, store the results in a 
   mobyContent Object
   <dl><dt></dt><dd>
+    <dl><dt><b>Overrides:</b></dt>
+      <dd><a href="bioMoby.webservice.Dispatcher.AbstractDispatcher-class.html#execute"><code>bioMoby.webservice.Dispatcher.AbstractDispatcher.execute</code></a></dd>
+    </dl>
   </dd></dl>
 </td></tr></table>
 <br />
@@ -115,13 +133,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.EDispatchError-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.EDispatchError-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.EDispatchError-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -75,13 +81,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.LockedIterator-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.LockedIterator-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.LockedIterator-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -68,13 +74,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.MultiThread-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.MultiThread-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.MultiThread-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -71,13 +77,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:30 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.SingleThread-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.SingleThread-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Dispatcher.SingleThread-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -141,13 +147,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators-module.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -54,11 +60,24 @@
   <b><a href="bioMoby.webservice.Invocators.GeneralInvocator-class.html"><code>GeneralInvocator</code></a></b></td>
   <td>General class for other invocators</td></tr>
 <tr><td width="15%">
-  <b><a href="bioMoby.webservice.Invocators.InvocatorError-class.html"><code>InvocatorError</code></a></b></td>
-  <td>Error during an invocation of method</td></tr>
-<tr><td width="15%">
   <b><a href="bioMoby.webservice.Invocators.LocalInvocator-class.html"><code>LocalInvocator</code></a></b></td>
   <td>Invokes local command</td></tr>
+<tr><td width="15%">
+  <b><a href="bioMoby.webservice.Invocators.PBSInvocator-class.html"><code>PBSInvocator</code></a></b></td>
+  <td>Invokes a command in a qsub</td></tr>
+<tr><td width="15%">
+  <b><a href="bioMoby.webservice.Invocators.QsubParameters-class.html"><code>QsubParameters</code></a></b></td>
+  <td>Parameters for the qsub command</td></tr>
+</table><br />
+
+
+<!-- =========== START OF EXCEPTIONS =========== -->
+<table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white">
+<tr bgcolor="#70b0f0" class="summary">
+  <th colspan="2">Exceptions</th></tr>
+<tr><td width="15%">
+  <b><a href="bioMoby.webservice.Invocators.InvocatorError-class.html"><code>InvocatorError</code></a></b></td>
+  <td>Error during an invocation of method</td></tr>
 </table><br />
 
 
@@ -69,13 +88,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.CGIPostInvocator-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.CGIPostInvocator-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.CGIPostInvocator-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -68,7 +74,8 @@
   <th colspan="2">&nbsp;&nbsp;&nbsp;&nbsp;Inherited from GeneralInvocator</th></tr>
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
   <td><code><span class="summary-sig"><a href="bioMoby.webservice.Invocators.GeneralInvocator-class.html#getResults" class="summary-sig-name"><code>getResults</code></a>(<span class=summary-sig-arg>self</span>)</span></code>
-</td></tr>
+<br />
+retrieve the results if available</td></tr>
 </table><br />
 
 
@@ -111,13 +118,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.CGIPostMInvocator-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.CGIPostMInvocator-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.CGIPostMInvocator-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -89,7 +95,8 @@
   <th colspan="2">&nbsp;&nbsp;&nbsp;&nbsp;Inherited from GeneralInvocator</th></tr>
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
   <td><code><span class="summary-sig"><a href="bioMoby.webservice.Invocators.GeneralInvocator-class.html#getResults" class="summary-sig-name"><code>getResults</code></a>(<span class=summary-sig-arg>self</span>)</span></code>
-</td></tr>
+<br />
+retrieve the results if available</td></tr>
 </table><br />
 
 
@@ -151,13 +158,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:08 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.GeneralInvocator-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.GeneralInvocator-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.GeneralInvocator-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -55,17 +61,51 @@
 <tr bgcolor="#70b0f0" class="summary">
   <th colspan="2">Method Summary</th></tr>
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
-  <td><code><a name="__init__"></a><span class="summary-sig"><span class="summary-sig-name">__init__</span>(<span class=summary-sig-arg>self</span>,
+  <td><code><span class="summary-sig"><a href="bioMoby.webservice.Invocators.GeneralInvocator-class.html#__init__" class="summary-sig-name"><code>__init__</code></a>(<span class=summary-sig-arg>self</span>,
           <span class=summary-sig-arg>queryid</span>,
           <span class=summary-sig-arg>userdir</span>,
           <span class=summary-sig-arg>timeout</span>)</span></code>
-</td></tr>
+<br />
+queryid is the identifier of a query, userdir is the session 
+directory, timeout the limit time of execution of the query</td></tr>
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
-  <td><code><a name="getResults"></a><span class="summary-sig"><span class="summary-sig-name">getResults</span>(<span class=summary-sig-arg>self</span>)</span></code>
-</td></tr>
+  <td><code><span class="summary-sig"><a href="bioMoby.webservice.Invocators.GeneralInvocator-class.html#getResults" class="summary-sig-name"><code>getResults</code></a>(<span class=summary-sig-arg>self</span>)</span></code>
+<br />
+retrieve the results if available</td></tr>
 </table><br />
 
 
+<!-- =========== START OF METHOD DETAILS =========== -->
+<table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white">
+<tr bgcolor="#70b0f0" class="details">
+  <th colspan="2">Method Details</th></tr>
+</table>
+
+<a name="__init__"></a>
+<table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td>
+  <h3><span class="sig"><span class="sig-name">__init__</span>(<span class=sig-arg>self</span>,
+          <span class=sig-arg>queryid</span>,
+          <span class=sig-arg>userdir</span>=<span class=sig-default>'/tmp'</span>,
+          <span class=sig-arg>timeout</span>=<span class=sig-default>None</span>)</span>
+    <br /><i>(Constructor)</i>
+  </h3>
+  queryid is the identifier of a query, userdir is the session 
+  directory, timeout the limit time of execution of the query
+  <dl><dt></dt><dd>
+  </dd></dl>
+</td></tr></table>
+
+<a name="getResults"></a>
+<table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td>
+  <h3><span class="sig"><span class="sig-name">getResults</span>(<span class=sig-arg>self</span>)</span>
+  </h3>
+  retrieve the results if available
+  <dl><dt></dt><dd>
+  </dd></dl>
+</td></tr></table>
+<br />
+
+
 <!-- =========== START OF NAVBAR =========== -->
 <table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0">
   <tr valign="center">
@@ -73,13 +113,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:05 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.InvocatorError-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.InvocatorError-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.InvocatorError-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -38,6 +44,12 @@
 <!-- =========== START OF CLASS DESCRIPTION =========== -->
 <h2 class="class">Class InvocatorError</h2>
 
+<pre class="base-tree">
+<a href="exceptions.Exception-class.html"><code>Exception</code></a> --+
+            |
+           <b>InvocatorError</b>
+</pre><br />
+
 <hr/>
 
 Error during an invocation of method
@@ -51,6 +63,14 @@
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
   <td><code><a name="__str__"></a><span class="summary-sig"><span class="summary-sig-name">__str__</span>(<span class=summary-sig-arg>self</span>)</span></code>
 </td></tr>
+<tr bgcolor="#e8f0f8" class="group">
+  <th colspan="2">&nbsp;&nbsp;&nbsp;&nbsp;Inherited from Exception</th></tr>
+<tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
+  <td><code><span class="summary-sig"><a href="exceptions.Exception-class.html#__init__" class="summary-sig-name"><code>__init__</code></a>(<span class="summary-sig-vararg">...</span>)</span></code>
+</td></tr>
+<tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
+  <td><code><span class="summary-sig"><a href="exceptions.Exception-class.html#__getitem__" class="summary-sig-name"><code>__getitem__</code></a>(<span class="summary-sig-vararg">...</span>)</span></code>
+</td></tr>
 </table><br />
 
 
@@ -61,13 +81,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.LocalInvocator-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.LocalInvocator-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/bioMoby.webservice.Invocators.LocalInvocator-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -44,6 +50,10 @@
                   <b>LocalInvocator</b>
 </pre><br />
 
+<dl><dt><b>Known Subclasses:</b></dt>
+<dd>
+    <a href="bioMoby.webservice.Invocators.PBSInvocator-class.html"><code>PBSInvocator</code></a></dd></dl>
+
 <hr/>
 
 Invokes local command
@@ -69,7 +79,8 @@
   <th colspan="2">&nbsp;&nbsp;&nbsp;&nbsp;Inherited from GeneralInvocator</th></tr>
 <tr><td align="right" valign="top" width="15%"><font size="-1">&nbsp;</font></td>
   <td><code><span class="summary-sig"><a href="bioMoby.webservice.Invocators.GeneralInvocator-class.html#getResults" class="summary-sig-name"><code>getResults</code></a>(<span class=summary-sig-arg>self</span>)</span></code>
-</td></tr>
+<br />
+retrieve the results if available</td></tr>
 </table><br />
 
 
@@ -105,13 +116,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:27 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:07 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/exceptions.Exception-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/exceptions.Exception-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/exceptions.Exception-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -43,7 +49,8 @@
     <a href="bioMoby.mobyExceptions.EInvalidType-class.html"><code>EInvalidType</code></a>,
     <a href="bioMoby.mobyExceptions.EMethodRetrieveError-class.html"><code>EMethodRetrieveError</code></a>,
     <a href="bioMoby.mobyExceptions.ENotAWSMethod-class.html"><code>ENotAWSMethod</code></a>,
-    <a href="bioMoby.mobyExceptions.ETypeMismatch-class.html"><code>ETypeMismatch</code></a></dd></dl>
+    <a href="bioMoby.mobyExceptions.ETypeMismatch-class.html"><code>ETypeMismatch</code></a>,
+    <a href="bioMoby.webservice.Invocators.InvocatorError-class.html"><code>InvocatorError</code></a></dd></dl>
 
 <hr/>
 
@@ -74,13 +81,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:28 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/frames.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/frames.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/frames.html	2004/12/09 14:41:34	1.3
@@ -1,7 +1,7 @@
 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Frameset//EN">
 <html>
 <head>
-  <title> API Documentation </title>
+  <title> bioMoby-python </title>
 </head>
 <frameset cols="20%,80%">
   <frameset rows="30%,70%">

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/help.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/help.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/help.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th bgcolor="#70b0f0" class="navselect">&nbsp;&nbsp;&nbsp;Help&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -32,7 +38,7 @@
 <center><h2> API Documentation </h2></center>
 
 <p> This document contains the API (Application Programming Interface)
-documentation for this project.  Documentation for the Python
+documentation for bioMoby-python.  Documentation for the Python
 objects defined by the project is divided into separate pages for each
 package, module, and class.  The API documentation also includes two
 pages containing information about the project as a whole: a trees
@@ -209,13 +215,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th bgcolor="#70b0f0" class="navselect">&nbsp;&nbsp;&nbsp;Help&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:30 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:10 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/index.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/index.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/index.html	2004/12/09 14:41:34	1.3
@@ -1,7 +1,7 @@
 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Frameset//EN">
 <html>
 <head>
-  <title> API Documentation </title>
+  <title> bioMoby-python </title>
 </head>
 <frameset cols="20%,80%">
   <frameset rows="30%,70%">

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/indices.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/indices.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/indices.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th bgcolor="#70b0f0" class="navselect">&nbsp;&nbsp;&nbsp;Index&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -70,6 +76,8 @@
     <td>Method in class <a href="__builtin__.object-class.html"><code>__builtin__.object</code></a></td></tr>
   <tr><td width="15%"><a href="__builtin__.type-class.html#__hash__"><code>__hash__</code></a></td>
     <td>Method in class <a href="__builtin__.type-class.html"><code>__builtin__.type</code></a></td></tr>
+  <tr><td width="15%"><a href="ZSI.TC.TypeCode-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="ZSI.TC.TypeCode-class.html"><code>ZSI.TC.TypeCode</code></a></td></tr>
   <tr><td width="15%"><a href="__builtin__.object-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="__builtin__.object-class.html"><code>__builtin__.object</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyClient.Central-class.html#__init__"><code>__init__</code></a></td>
@@ -132,6 +140,14 @@
     <td>Method in class <a href="bioMoby.ontology.B64_encoded_jpeg.MobyB64_encoded_jpeg-class.html"><code>bioMoby.ontology.B64_encoded_jpeg.MobyB64_encoded_jpeg</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature-class.html"><code>bioMoby.ontology.BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText-class.html"><code>bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence-class.html"><code>bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence-class.html"><code>bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence-class.html"><code>bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.DNASequence.MobyDNASequence-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.DNASequence.MobyDNASequence-class.html"><code>bioMoby.ontology.DNASequence.MobyDNASequence</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.DNASequenceWithGFFFeatures.MobyDNASequenceWithGFFFeatures-class.html#__init__"><code>__init__</code></a></td>
@@ -146,6 +162,10 @@
     <td>Method in class <a href="bioMoby.ontology.EmblFlatfile.MobyEmblFlatfile-class.html"><code>bioMoby.ontology.EmblFlatfile.MobyEmblFlatfile</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.FASTA.MobyFASTA-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.FASTA.MobyFASTA-class.html"><code>bioMoby.ontology.FASTA.MobyFASTA</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.FASTA_AA.MobyFASTA_AA-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.FASTA_AA.MobyFASTA_AA-class.html"><code>bioMoby.ontology.FASTA_AA.MobyFASTA_AA</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.FASTA_NA.MobyFASTA_NA-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.FASTA_NA.MobyFASTA_NA-class.html"><code>bioMoby.ontology.FASTA_NA.MobyFASTA_NA</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.GFF.MobyGFF-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.GFF.MobyGFF-class.html"><code>bioMoby.ontology.GFF.MobyGFF</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.GFF1.MobyGFF1-class.html#__init__"><code>__init__</code></a></td>
@@ -170,6 +190,8 @@
     <td>Method in class <a href="bioMoby.ontology.Germplasm_List.MobyGermplasm_List-class.html"><code>bioMoby.ontology.Germplasm_List.MobyGermplasm_List</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword-class.html"><code>bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.HBond_Pair.MobyHBond_Pair-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.HBond_Pair.MobyHBond_Pair-class.html"><code>bioMoby.ontology.HBond_Pair.MobyHBond_Pair</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.HCA_picture.MobyHCA_picture-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.HCA_picture.MobyHCA_picture-class.html"><code>bioMoby.ontology.HCA_picture.MobyHCA_picture</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj-class.html#__init__"><code>__init__</code></a></td>
@@ -190,6 +212,10 @@
     <td>Method in class <a href="bioMoby.ontology.Interaction_partner.MobyInteraction_partner-class.html"><code>bioMoby.ontology.Interaction_partner.MobyInteraction_partner</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Interactor.MobyInteractor-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.Interactor.MobyInteractor-class.html"><code>bioMoby.ontology.Interactor.MobyInteractor</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.MEME_Text.MobyMEME_Text-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.MEME_Text.MobyMEME_Text-class.html"><code>bioMoby.ontology.MEME_Text.MobyMEME_Text</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION-class.html"><code>bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.MMP_Locus.MobyMMP_Locus-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.MMP_Locus.MobyMMP_Locus-class.html"><code>bioMoby.ontology.MMP_Locus.MobyMMP_Locus</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.MO_Term_Test.MobyMO_Term_Test-class.html#__init__"><code>__init__</code></a></td>
@@ -202,6 +228,8 @@
     <td>Method in class <a href="bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text-class.html"><code>bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML-class.html"><code>bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text-class.html"><code>bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence-class.html"><code>bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.PDBFormattedText.MobyPDBFormattedText-class.html#__init__"><code>__init__</code></a></td>
@@ -214,6 +242,8 @@
     <td>Method in class <a href="bioMoby.ontology.PubMedMEDLINE.MobyPubMedMEDLINE-class.html"><code>bioMoby.ontology.PubMedMEDLINE.MobyPubMedMEDLINE</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.RNASequence.MobyRNASequence-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.RNASequence.MobyRNASequence-class.html"><code>bioMoby.ontology.RNASequence.MobyRNASequence</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION-class.html"><code>bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.SchematikonMotifID.MobySchematikonMotifID-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.SchematikonMotifID.MobySchematikonMotifID-class.html"><code>bioMoby.ontology.SchematikonMotifID.MobySchematikonMotifID</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.SchematikonMotifSupport.MobySchematikonMotifSupport-class.html#__init__"><code>__init__</code></a></td>
@@ -240,6 +270,8 @@
     <td>Method in class <a href="bioMoby.ontology.Snp_genotype.MobySnp_genotype-class.html"><code>bioMoby.ontology.Snp_genotype.MobySnp_genotype</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Study.MobyStudy-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.Study.MobyStudy-class.html"><code>bioMoby.ontology.Study.MobyStudy</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TEST.MobyTEST-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.TEST.MobyTEST-class.html"><code>bioMoby.ontology.TEST.MobyTEST</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.TargetP_result.MobyTargetP_result-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.TargetP_result.MobyTargetP_result-class.html"><code>bioMoby.ontology.TargetP_result.MobyTargetP_result</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Testout.MobyTestout-class.html#__init__"><code>__init__</code></a></td>
@@ -262,18 +294,30 @@
     <td>Method in class <a href="bioMoby.ontology.Trait_Details.MobyTrait_Details-class.html"><code>bioMoby.ontology.Trait_Details.MobyTrait_Details</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Tree.MobyTree-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.Tree.MobyTree-class.html"><code>bioMoby.ontology.Tree.MobyTree</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION-class.html"><code>bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix-class.html"><code>bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS-class.html"><code>bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.VirtualSequence.MobyVirtualSequence-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.VirtualSequence.MobyVirtualSequence-class.html"><code>bioMoby.ontology.VirtualSequence.MobyVirtualSequence</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text-class.html"><code>bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Wildcard_Query.MobyWildcard_Query-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.Wildcard_Query.MobyWildcard_Query-class.html"><code>bioMoby.ontology.Wildcard_Query.MobyWildcard_Query</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.AbstractDispatcher-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.webservice.Dispatcher.AbstractDispatcher-class.html"><code>bioMoby.webservice.Dispatcher.AbstractDispatcher</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.Dispatcher-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.webservice.Dispatcher.Dispatcher-class.html"><code>bioMoby.webservice.Dispatcher.Dispatcher</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.LockedIterator-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.webservice.Dispatcher.LockedIterator-class.html"><code>bioMoby.webservice.Dispatcher.LockedIterator</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.MultiThread-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.webservice.Dispatcher.MultiThread-class.html"><code>bioMoby.webservice.Dispatcher.MultiThread</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.PBSDispatcher-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.webservice.Dispatcher.PBSDispatcher-class.html"><code>bioMoby.webservice.Dispatcher.PBSDispatcher</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.SimpleDispatcher-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.webservice.Dispatcher.SimpleDispatcher-class.html"><code>bioMoby.webservice.Dispatcher.SimpleDispatcher</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.SingleThread-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.webservice.Dispatcher.SingleThread-class.html"><code>bioMoby.webservice.Dispatcher.SingleThread</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Invocators.CGIPostInvocator-class.html#__init__"><code>__init__</code></a></td>
@@ -284,6 +328,10 @@
     <td>Method in class <a href="bioMoby.webservice.Invocators.GeneralInvocator-class.html"><code>bioMoby.webservice.Invocators.GeneralInvocator</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Invocators.LocalInvocator-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="bioMoby.webservice.Invocators.LocalInvocator-class.html"><code>bioMoby.webservice.Invocators.LocalInvocator</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Invocators.PBSInvocator-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.webservice.Invocators.PBSInvocator-class.html"><code>bioMoby.webservice.Invocators.PBSInvocator</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Invocators.QsubParameters-class.html#__init__"><code>__init__</code></a></td>
+    <td>Method in class <a href="bioMoby.webservice.Invocators.QsubParameters-class.html"><code>bioMoby.webservice.Invocators.QsubParameters</code></a></td></tr>
   <tr><td width="15%"><a href="exceptions.Exception-class.html#__init__"><code>__init__</code></a></td>
     <td>Method in class <a href="exceptions.Exception-class.html"><code>exceptions.Exception</code></a></td></tr>
   <tr><td width="15%"><a href="threading.Thread-class.html#__init__"><code>__init__</code></a></td>
@@ -368,6 +416,8 @@
     <td>Method in class <a href="__builtin__.type-class.html"><code>__builtin__.type</code></a></td></tr>
   <tr><td width="15%"><a href="__builtin__.type-class.html#__weakrefoffset__"><code>__weakrefoffset__</code></a></td>
     <td>Variable in class <a href="__builtin__.type-class.html"><code>__builtin__.type</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.AbstractDispatcher-class.html"><code>AbstractDispatcher</code></a></td>
+    <td>Class in module <a href="bioMoby.webservice.Dispatcher-module.html"><code>bioMoby.webservice.Dispatcher</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.AGI_LocusCode-module.html"><code>AGI_LocusCode</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Allele_freq-module.html"><code>Allele_freq</code></a></td>
@@ -398,6 +448,8 @@
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby-module.html"><code>bioMoby</code></a></td>
     <td>Package</td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.TCBioMoby.Body-class.html"><code>Body</code></a></td>
+    <td>Class in module <a href="bioMoby.webservice.TCBioMoby-module.html"><code>bioMoby.webservice.TCBioMoby</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyClient.Central-class.html#call_method"><code>call_method</code></a></td>
     <td>Method in class <a href="bioMoby.mobyClient.Central-class.html"><code>bioMoby.mobyClient.Central</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyClient.Central-class.html"><code>Central</code></a></td>
@@ -406,8 +458,20 @@
     <td>Class in module <a href="bioMoby.webservice.Invocators-module.html"><code>bioMoby.webservice.Invocators</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Invocators.CGIPostMInvocator-class.html"><code>CGIPostMInvocator</code></a></td>
     <td>Class in module <a href="bioMoby.webservice.Invocators-module.html"><code>bioMoby.webservice.Invocators</code></a></td></tr>
+  <tr><td width="15%"><a href="ZSI.TC.TypeCode-class.html#checkname"><code>checkname</code></a></td>
+    <td>Method in class <a href="ZSI.TC.TypeCode-class.html"><code>ZSI.TC.TypeCode</code></a></td></tr>
+  <tr><td width="15%"><a href="ZSI.TC.TypeCode-class.html#checktype"><code>checktype</code></a></td>
+    <td>Method in class <a href="ZSI.TC.TypeCode-class.html"><code>ZSI.TC.TypeCode</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyClient.Client-class.html"><code>Client</code></a></td>
     <td>Class in module <a href="bioMoby.mobyClient-module.html"><code>bioMoby.mobyClient</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.ClustalAlnFormattedText-module.html"><code>ClustalAlnFormattedText</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.CommentedAASequence-module.html"><code>CommentedAASequence</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.CommentedDNASequence-module.html"><code>CommentedDNASequence</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.CommentedRNASequence-module.html"><code>CommentedRNASequence</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyDataTypes.MobyZmPDB-class.html#compress"><code>compress</code></a></td>
     <td>Method in class <a href="bioMoby.mobyDataTypes.MobyZmPDB-class.html"><code>bioMoby.mobyDataTypes.MobyZmPDB</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyRegister.GeneralInformations-class.html#contact"><code>contact</code></a></td>
@@ -474,16 +538,26 @@
     <td>Class in module <code>exceptions</code></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyService.Service-class.html#execute"><code>execute</code></a></td>
     <td>Method in class <a href="bioMoby.mobyService.Service-class.html"><code>bioMoby.mobyService.Service</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.AbstractDispatcher-class.html#execute"><code>execute</code></a></td>
+    <td>Method in class <a href="bioMoby.webservice.Dispatcher.AbstractDispatcher-class.html"><code>bioMoby.webservice.Dispatcher.AbstractDispatcher</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.Dispatcher-class.html#execute"><code>execute</code></a></td>
     <td>Method in class <a href="bioMoby.webservice.Dispatcher.Dispatcher-class.html"><code>bioMoby.webservice.Dispatcher.Dispatcher</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.PBSDispatcher-class.html#execute"><code>execute</code></a></td>
+    <td>Method in class <a href="bioMoby.webservice.Dispatcher.PBSDispatcher-class.html"><code>bioMoby.webservice.Dispatcher.PBSDispatcher</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Invocators.CGIPostInvocator-class.html#execute"><code>execute</code></a></td>
     <td>Method in class <a href="bioMoby.webservice.Invocators.CGIPostInvocator-class.html"><code>bioMoby.webservice.Invocators.CGIPostInvocator</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Invocators.CGIPostMInvocator-class.html#execute"><code>execute</code></a></td>
     <td>Method in class <a href="bioMoby.webservice.Invocators.CGIPostMInvocator-class.html"><code>bioMoby.webservice.Invocators.CGIPostMInvocator</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Invocators.LocalInvocator-class.html#execute"><code>execute</code></a></td>
     <td>Method in class <a href="bioMoby.webservice.Invocators.LocalInvocator-class.html"><code>bioMoby.webservice.Invocators.LocalInvocator</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Invocators.PBSInvocator-class.html#execute"><code>execute</code></a></td>
+    <td>Method in class <a href="bioMoby.webservice.Invocators.PBSInvocator-class.html"><code>bioMoby.webservice.Invocators.PBSInvocator</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.FASTA-module.html"><code>FASTA</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.FASTA_AA-module.html"><code>FASTA_AA</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.FASTA_NA-module.html"><code>FASTA_NA</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyClient.Client-class.html#findService"><code>findService</code></a></td>
     <td>Method in class <a href="bioMoby.mobyClient.Client-class.html"><code>bioMoby.mobyClient.Client</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyDataTypes.MobyFloat-class.html#fromMoby"><code>fromMoby</code></a></td>
@@ -518,6 +592,14 @@
     <td>Method in class <a href="bioMoby.ontology.B64_encoded_jpeg.MobyB64_encoded_jpeg-class.html"><code>bioMoby.ontology.B64_encoded_jpeg.MobyB64_encoded_jpeg</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature-class.html"><code>bioMoby.ontology.BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText-class.html"><code>bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence-class.html"><code>bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence-class.html"><code>bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence-class.html"><code>bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.DNASequence.MobyDNASequence-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.DNASequence.MobyDNASequence-class.html"><code>bioMoby.ontology.DNASequence.MobyDNASequence</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.DNASequenceWithGFFFeatures.MobyDNASequenceWithGFFFeatures-class.html#fromMoby"><code>fromMoby</code></a></td>
@@ -532,6 +614,10 @@
     <td>Method in class <a href="bioMoby.ontology.EmblFlatfile.MobyEmblFlatfile-class.html"><code>bioMoby.ontology.EmblFlatfile.MobyEmblFlatfile</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.FASTA.MobyFASTA-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.FASTA.MobyFASTA-class.html"><code>bioMoby.ontology.FASTA.MobyFASTA</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.FASTA_AA.MobyFASTA_AA-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.FASTA_AA.MobyFASTA_AA-class.html"><code>bioMoby.ontology.FASTA_AA.MobyFASTA_AA</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.FASTA_NA.MobyFASTA_NA-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.FASTA_NA.MobyFASTA_NA-class.html"><code>bioMoby.ontology.FASTA_NA.MobyFASTA_NA</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.GFF.MobyGFF-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.GFF.MobyGFF-class.html"><code>bioMoby.ontology.GFF.MobyGFF</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.GFF1.MobyGFF1-class.html#fromMoby"><code>fromMoby</code></a></td>
@@ -556,6 +642,8 @@
     <td>Method in class <a href="bioMoby.ontology.Germplasm_List.MobyGermplasm_List-class.html"><code>bioMoby.ontology.Germplasm_List.MobyGermplasm_List</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword-class.html"><code>bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.HBond_Pair.MobyHBond_Pair-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.HBond_Pair.MobyHBond_Pair-class.html"><code>bioMoby.ontology.HBond_Pair.MobyHBond_Pair</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.HCA_picture.MobyHCA_picture-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.HCA_picture.MobyHCA_picture-class.html"><code>bioMoby.ontology.HCA_picture.MobyHCA_picture</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj-class.html#fromMoby"><code>fromMoby</code></a></td>
@@ -576,6 +664,10 @@
     <td>Method in class <a href="bioMoby.ontology.Interaction_partner.MobyInteraction_partner-class.html"><code>bioMoby.ontology.Interaction_partner.MobyInteraction_partner</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Interactor.MobyInteractor-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.Interactor.MobyInteractor-class.html"><code>bioMoby.ontology.Interactor.MobyInteractor</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.MEME_Text.MobyMEME_Text-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.MEME_Text.MobyMEME_Text-class.html"><code>bioMoby.ontology.MEME_Text.MobyMEME_Text</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION-class.html"><code>bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.MMP_Locus.MobyMMP_Locus-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.MMP_Locus.MobyMMP_Locus-class.html"><code>bioMoby.ontology.MMP_Locus.MobyMMP_Locus</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.MO_Term_Test.MobyMO_Term_Test-class.html#fromMoby"><code>fromMoby</code></a></td>
@@ -588,6 +680,8 @@
     <td>Method in class <a href="bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text-class.html"><code>bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML-class.html"><code>bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text-class.html"><code>bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence-class.html"><code>bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.PDBFormattedText.MobyPDBFormattedText-class.html#fromMoby"><code>fromMoby</code></a></td>
@@ -600,6 +694,8 @@
     <td>Method in class <a href="bioMoby.ontology.PubMedMEDLINE.MobyPubMedMEDLINE-class.html"><code>bioMoby.ontology.PubMedMEDLINE.MobyPubMedMEDLINE</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.RNASequence.MobyRNASequence-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.RNASequence.MobyRNASequence-class.html"><code>bioMoby.ontology.RNASequence.MobyRNASequence</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION-class.html"><code>bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.SchematikonMotifID.MobySchematikonMotifID-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.SchematikonMotifID.MobySchematikonMotifID-class.html"><code>bioMoby.ontology.SchematikonMotifID.MobySchematikonMotifID</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.SchematikonMotifSupport.MobySchematikonMotifSupport-class.html#fromMoby"><code>fromMoby</code></a></td>
@@ -626,6 +722,8 @@
     <td>Method in class <a href="bioMoby.ontology.Snp_genotype.MobySnp_genotype-class.html"><code>bioMoby.ontology.Snp_genotype.MobySnp_genotype</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Study.MobyStudy-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.Study.MobyStudy-class.html"><code>bioMoby.ontology.Study.MobyStudy</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TEST.MobyTEST-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.TEST.MobyTEST-class.html"><code>bioMoby.ontology.TEST.MobyTEST</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.TargetP_result.MobyTargetP_result-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.TargetP_result.MobyTargetP_result-class.html"><code>bioMoby.ontology.TargetP_result.MobyTargetP_result</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Testout.MobyTestout-class.html#fromMoby"><code>fromMoby</code></a></td>
@@ -648,6 +746,12 @@
     <td>Method in class <a href="bioMoby.ontology.Trait_Details.MobyTrait_Details-class.html"><code>bioMoby.ontology.Trait_Details.MobyTrait_Details</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Tree.MobyTree-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.Tree.MobyTree-class.html"><code>bioMoby.ontology.Tree.MobyTree</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION-class.html"><code>bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix-class.html"><code>bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS-class.html#fromMoby"><code>fromMoby</code></a></td>
+    <td>Method in class <a href="bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS-class.html"><code>bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.VirtualSequence.MobyVirtualSequence-class.html#fromMoby"><code>fromMoby</code></a></td>
     <td>Method in class <a href="bioMoby.ontology.VirtualSequence.MobyVirtualSequence-class.html"><code>bioMoby.ontology.VirtualSequence.MobyVirtualSequence</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text-class.html#fromMoby"><code>fromMoby</code></a></td>
@@ -674,6 +778,8 @@
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Invocators.CGIPostMInvocator-class.html#get_content_type"><code>get_content_type</code></a></td>
     <td>Method in class <a href="bioMoby.webservice.Invocators.CGIPostMInvocator-class.html"><code>bioMoby.webservice.Invocators.CGIPostMInvocator</code></a></td></tr>
+  <tr><td width="15%"><a href="ZSI.TC.TypeCode-class.html#get_parse_and_errorlist"><code>get_parse_and_errorlist</code></a></td>
+    <td>Method in class <a href="ZSI.TC.TypeCode-class.html"><code>ZSI.TC.TypeCode</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyDataTypes.MobyObject-class.html#getInfo"><code>getInfo</code></a></td>
     <td>Method in class <a href="bioMoby.mobyDataTypes.MobyObject-class.html"><code>bioMoby.mobyDataTypes.MobyObject</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyService.Service-class.html#getMethods"><code>getMethods</code></a></td>
@@ -702,6 +808,8 @@
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Haplotyping_Study_obj-module.html"><code>Haplotyping_Study_obj</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.HBond_Pair-module.html"><code>HBond_Pair</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.HCA_picture-module.html"><code>HCA_picture</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.ICIS_Query-module.html"><code>ICIS_Query</code></a></td>
@@ -774,6 +882,10 @@
     <td>Method in class <a href="bioMoby.mobyMarshal.MobyMarshaller-class.html"><code>bioMoby.mobyMarshal.MobyMarshaller</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyMarshal.MobyMarshaller-class.html#m_unicode"><code>m_unicode</code></a></td>
     <td>Method in class <a href="bioMoby.mobyMarshal.MobyMarshaller-class.html"><code>bioMoby.mobyMarshal.MobyMarshaller</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.MEME_Text-module.html"><code>MEME_Text</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.MGIS_ACCESSION-module.html"><code>MGIS_ACCESSION</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.MMP_Locus-module.html"><code>MMP_Locus</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.MO_Term_Test-module.html"><code>MO_Term_Test</code></a></td>
@@ -798,6 +910,14 @@
     <td>Class in module <a href="bioMoby.ontology.BasicGFFSequenceFeature-module.html"><code>bioMoby.ontology.BasicGFFSequenceFeature</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyClient-module.html"><code>mobyClient</code></a></td>
     <td>Module in package <a href="bioMoby-module.html"><code>bioMoby</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText-class.html"><code>MobyClustalAlnFormattedText</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.ClustalAlnFormattedText-module.html"><code>bioMoby.ontology.ClustalAlnFormattedText</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence-class.html"><code>MobyCommentedAASequence</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.CommentedAASequence-module.html"><code>bioMoby.ontology.CommentedAASequence</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence-class.html"><code>MobyCommentedDNASequence</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.CommentedDNASequence-module.html"><code>bioMoby.ontology.CommentedDNASequence</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence-class.html"><code>MobyCommentedRNASequence</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.CommentedRNASequence-module.html"><code>bioMoby.ontology.CommentedRNASequence</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyDataTypes.MobyContent-class.html"><code>MobyContent</code></a></td>
     <td>Class in module <a href="bioMoby.mobyDataTypes-module.html"><code>bioMoby.mobyDataTypes</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyDataTypes-module.html"><code>mobyDataTypes</code></a></td>
@@ -818,6 +938,10 @@
     <td>Module in package <a href="bioMoby-module.html"><code>bioMoby</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.FASTA.MobyFASTA-class.html"><code>MobyFASTA</code></a></td>
     <td>Class in module <a href="bioMoby.ontology.FASTA-module.html"><code>bioMoby.ontology.FASTA</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.FASTA_AA.MobyFASTA_AA-class.html"><code>MobyFASTA_AA</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.FASTA_AA-module.html"><code>bioMoby.ontology.FASTA_AA</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.FASTA_NA.MobyFASTA_NA-class.html"><code>MobyFASTA_NA</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.FASTA_NA-module.html"><code>bioMoby.ontology.FASTA_NA</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyDataTypes.MobyFloat-class.html"><code>MobyFloat</code></a></td>
     <td>Class in module <a href="bioMoby.mobyDataTypes-module.html"><code>bioMoby.mobyDataTypes</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.GenbankFlatfile.MobyGenbankFlatfile-class.html"><code>MobyGenbankFlatfile</code></a></td>
@@ -846,6 +970,8 @@
     <td>Class in module <a href="bioMoby.ontology.GO_Term-module.html"><code>bioMoby.ontology.GO_Term</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj-class.html"><code>MobyHaplotyping_Study_obj</code></a></td>
     <td>Class in module <a href="bioMoby.ontology.Haplotyping_Study_obj-module.html"><code>bioMoby.ontology.Haplotyping_Study_obj</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.HBond_Pair.MobyHBond_Pair-class.html"><code>MobyHBond_Pair</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.HBond_Pair-module.html"><code>bioMoby.ontology.HBond_Pair</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.HCA_picture.MobyHCA_picture-class.html"><code>MobyHCA_picture</code></a></td>
     <td>Class in module <a href="bioMoby.ontology.HCA_picture-module.html"><code>bioMoby.ontology.HCA_picture</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.ICIS_Query.MobyICIS_Query-class.html"><code>MobyICIS_Query</code></a></td>
@@ -870,6 +996,10 @@
     <td>Module in package <a href="bioMoby-module.html"><code>bioMoby</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyMarshal.MobyMarshaller-class.html"><code>MobyMarshaller</code></a></td>
     <td>Class in module <a href="bioMoby.mobyMarshal-module.html"><code>bioMoby.mobyMarshal</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.MEME_Text.MobyMEME_Text-class.html"><code>MobyMEME_Text</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.MEME_Text-module.html"><code>bioMoby.ontology.MEME_Text</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION-class.html"><code>MobyMGIS_ACCESSION</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.MGIS_ACCESSION-module.html"><code>bioMoby.ontology.MGIS_ACCESSION</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.MMP_Locus.MobyMMP_Locus-class.html"><code>MobyMMP_Locus</code></a></td>
     <td>Class in module <a href="bioMoby.ontology.MMP_Locus-module.html"><code>bioMoby.ontology.MMP_Locus</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.MO_Term_Test.MobyMO_Term_Test-class.html"><code>MobyMO_Term_Test</code></a></td>
@@ -882,6 +1012,8 @@
     <td>Class in module <a href="bioMoby.ontology.NCBI_BLAST_Text-module.html"><code>bioMoby.ontology.NCBI_BLAST_Text</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML-class.html"><code>MobyNCBI_Blast_XML</code></a></td>
     <td>Class in module <a href="bioMoby.ontology.NCBI_Blast_XML-module.html"><code>bioMoby.ontology.NCBI_Blast_XML</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text-class.html"><code>MobyNCBI_MEME_Text</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.NCBI_MEME_Text-module.html"><code>bioMoby.ontology.NCBI_MEME_Text</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence-class.html"><code>MobyNucleotideSequence</code></a></td>
     <td>Class in module <a href="bioMoby.ontology.NucleotideSequence-module.html"><code>bioMoby.ontology.NucleotideSequence</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyDataTypes.MobyObject-class.html"><code>MobyObject</code></a></td>
@@ -922,6 +1054,8 @@
     <td>Class in module <a href="bioMoby.ontology.SimpleAnnotatedGIFImage-module.html"><code>bioMoby.ontology.SimpleAnnotatedGIFImage</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.SimpleAnnotatedJPEGImage.MobySimpleAnnotatedJPEGImage-class.html"><code>MobySimpleAnnotatedJPEGImage</code></a></td>
     <td>Class in module <a href="bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html"><code>bioMoby.ontology.SimpleAnnotatedJPEGImage</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION-class.html"><code>MobySINGER_ACCESSION</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.SINGER_ACCESSION-module.html"><code>bioMoby.ontology.SINGER_ACCESSION</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Snp_allele.MobySnp_allele-class.html"><code>MobySnp_allele</code></a></td>
     <td>Class in module <a href="bioMoby.ontology.Snp_allele-module.html"><code>bioMoby.ontology.Snp_allele</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Snp_genotype.MobySnp_genotype-class.html"><code>MobySnp_genotype</code></a></td>
@@ -932,6 +1066,8 @@
     <td>Class in module <a href="bioMoby.ontology.Study-module.html"><code>bioMoby.ontology.Study</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.TargetP_result.MobyTargetP_result-class.html"><code>MobyTargetP_result</code></a></td>
     <td>Class in module <a href="bioMoby.ontology.TargetP_result-module.html"><code>bioMoby.ontology.TargetP_result</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TEST.MobyTEST-class.html"><code>MobyTEST</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.TEST-module.html"><code>bioMoby.ontology.TEST</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Testout.MobyTestout-class.html"><code>MobyTestout</code></a></td>
     <td>Class in module <a href="bioMoby.ontology.Testout-module.html"><code>bioMoby.ontology.Testout</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Text_plain.MobyText_plain-class.html"><code>MobyText_plain</code></a></td>
@@ -952,6 +1088,12 @@
     <td>Class in module <a href="bioMoby.ontology.Trait_Details-module.html"><code>bioMoby.ontology.Trait_Details</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Tree.MobyTree-class.html"><code>MobyTree</code></a></td>
     <td>Class in module <a href="bioMoby.ontology.Tree-module.html"><code>bioMoby.ontology.Tree</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION-class.html"><code>MobyTropGENE_ACCESSION</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.TropGENE_ACCESSION-module.html"><code>bioMoby.ontology.TropGENE_ACCESSION</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix-class.html"><code>MobyTropGENE_Diversity_Matrix</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.TropGENE_Diversity_Matrix-module.html"><code>bioMoby.ontology.TropGENE_Diversity_Matrix</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS-class.html"><code>MobyTropGENE_LOCUS</code></a></td>
+    <td>Class in module <a href="bioMoby.ontology.TropGENE_LOCUS-module.html"><code>bioMoby.ontology.TropGENE_LOCUS</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyMarshal.MobyUnmarshaller-class.html"><code>MobyUnmarshaller</code></a></td>
     <td>Class in module <a href="bioMoby.mobyMarshal-module.html"><code>bioMoby.mobyMarshal</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.VirtualSequence.MobyVirtualSequence-class.html"><code>MobyVirtualSequence</code></a></td>
@@ -972,14 +1114,20 @@
     <td>Class in module <a href="bioMoby.webservice.Dispatcher-module.html"><code>bioMoby.webservice.Dispatcher</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.MyTree-module.html"><code>MyTree</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="ZSI.TC.TypeCode-class.html#name_match"><code>name_match</code></a></td>
+    <td>Method in class <a href="ZSI.TC.TypeCode-class.html"><code>ZSI.TC.TypeCode</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyRegister.Namespace-class.html"><code>Namespace</code></a></td>
     <td>Class in module <a href="bioMoby.mobyRegister-module.html"><code>bioMoby.mobyRegister</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.NCBI_BLAST_Text-module.html"><code>NCBI_BLAST_Text</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.NCBI_Blast_XML-module.html"><code>NCBI_Blast_XML</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.NCBI_MEME_Text-module.html"><code>NCBI_MEME_Text</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.LockedIterator-class.html#next"><code>next</code></a></td>
     <td>Method in class <a href="bioMoby.webservice.Dispatcher.LockedIterator-class.html"><code>bioMoby.webservice.Dispatcher.LockedIterator</code></a></td></tr>
+  <tr><td width="15%"><a href="ZSI.TC.TypeCode-class.html#nilled"><code>nilled</code></a></td>
+    <td>Method in class <a href="ZSI.TC.TypeCode-class.html"><code>ZSI.TC.TypeCode</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.NucleotideSequence-module.html"><code>NucleotideSequence</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="__builtin__.object-class.html"><code>object</code></a></td>
@@ -990,6 +1138,14 @@
     <td>Package in package <a href="bioMoby-module.html"><code>bioMoby</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyDataTypes.Parameter-class.html"><code>Parameter</code></a></td>
     <td>Class in module <a href="bioMoby.mobyDataTypes-module.html"><code>bioMoby.mobyDataTypes</code></a></td></tr>
+  <tr><td width="15%"><a href="ZSI.TC.TypeCode-class.html#parse"><code>parse</code></a></td>
+    <td>Method in class <a href="ZSI.TC.TypeCode-class.html"><code>ZSI.TC.TypeCode</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.TCBioMoby.Body-class.html#parselist"><code>parselist</code></a></td>
+    <td>Variable in class <a href="bioMoby.webservice.TCBioMoby.Body-class.html"><code>bioMoby.webservice.TCBioMoby.Body</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.PBSDispatcher-class.html"><code>PBSDispatcher</code></a></td>
+    <td>Class in module <a href="bioMoby.webservice.Dispatcher-module.html"><code>bioMoby.webservice.Dispatcher</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Invocators.PBSInvocator-class.html"><code>PBSInvocator</code></a></td>
+    <td>Class in module <a href="bioMoby.webservice.Invocators-module.html"><code>bioMoby.webservice.Invocators</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.PDBFormattedText-module.html"><code>PDBFormattedText</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.PDGJOB-module.html"><code>PDGJOB</code></a></td>
@@ -1002,6 +1158,8 @@
     <td>Method in class <a href="bioMoby.webservice.Invocators.CGIPostMInvocator-class.html"><code>bioMoby.webservice.Invocators.CGIPostMInvocator</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.PubMedMEDLINE-module.html"><code>PubMedMEDLINE</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Invocators.QsubParameters-class.html"><code>QsubParameters</code></a></td>
+    <td>Class in module <a href="bioMoby.webservice.Invocators-module.html"><code>bioMoby.webservice.Invocators</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyRegister.Namespace-class.html#register"><code>register</code></a></td>
     <td>Method in class <a href="bioMoby.mobyRegister.Namespace-class.html"><code>bioMoby.mobyRegister.Namespace</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyRegister.ObjectClass-class.html#register"><code>register</code></a></td>
@@ -1056,6 +1214,10 @@
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Scored_acronym_string-module.html"><code>Scored_acronym_string</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.TCBioMoby.Body-class.html#serialize"><code>serialize</code></a></td>
+    <td>Method in class <a href="bioMoby.webservice.TCBioMoby.Body-class.html"><code>bioMoby.webservice.TCBioMoby.Body</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.TCBioMoby.Body-class.html#seriallist"><code>seriallist</code></a></td>
+    <td>Variable in class <a href="bioMoby.webservice.TCBioMoby.Body-class.html"><code>bioMoby.webservice.TCBioMoby.Body</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyService.Service-class.html"><code>Service</code></a></td>
     <td>Class in module <a href="bioMoby.mobyService-module.html"><code>bioMoby.mobyService</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyService.ServiceArticle-class.html"><code>ServiceArticle</code></a></td>
@@ -1072,12 +1234,22 @@
     <td>Method in class <a href="threading.Thread-class.html"><code>threading.Thread</code></a></td></tr>
   <tr><td width="15%"><a href="threading.Thread-class.html#setName"><code>setName</code></a></td>
     <td>Method in class <a href="threading.Thread-class.html"><code>threading.Thread</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Invocators.PBSInvocator-class.html#setParameters"><code>setParameters</code></a></td>
+    <td>Method in class <a href="bioMoby.webservice.Invocators.PBSInvocator-class.html"><code>bioMoby.webservice.Invocators.PBSInvocator</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Simple_key_value_pair-module.html"><code>Simple_key_value_pair</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="ZSI.TC.TypeCode-class.html#simple_value"><code>simple_value</code></a></td>
+    <td>Method in class <a href="ZSI.TC.TypeCode-class.html"><code>ZSI.TC.TypeCode</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.SimpleAnnotatedGIFImage-module.html"><code>SimpleAnnotatedGIFImage</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html"><code>SimpleAnnotatedJPEGImage</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.SimpleDispatcher-class.html"><code>SimpleDispatcher</code></a></td>
+    <td>Class in module <a href="bioMoby.webservice.Dispatcher-module.html"><code>bioMoby.webservice.Dispatcher</code></a></td></tr>
+  <tr><td width="15%"><a href="ZSI.TC.TypeCode-class.html#SimpleHREF"><code>SimpleHREF</code></a></td>
+    <td>Method in class <a href="ZSI.TC.TypeCode-class.html"><code>ZSI.TC.TypeCode</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.SINGER_ACCESSION-module.html"><code>SINGER_ACCESSION</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice.Dispatcher.SingleThread-class.html"><code>SingleThread</code></a></td>
     <td>Class in module <a href="bioMoby.webservice.Dispatcher-module.html"><code>bioMoby.webservice.Dispatcher</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Snp_allele-module.html"><code>Snp_allele</code></a></td>
@@ -1092,8 +1264,14 @@
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.mobyService.ServiceQuery-class.html#submits2XML"><code>submits2XML</code></a></td>
     <td>Method in class <a href="bioMoby.mobyService.ServiceQuery-class.html"><code>bioMoby.mobyService.ServiceQuery</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.TCBioMoby.Body-class.html#tag"><code>tag</code></a></td>
+    <td>Variable in class <a href="bioMoby.webservice.TCBioMoby.Body-class.html"><code>bioMoby.webservice.TCBioMoby.Body</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.TargetP_result-module.html"><code>TargetP_result</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.TCBioMoby-module.html"><code>TCBioMoby</code></a></td>
+    <td>Module in package <a href="bioMoby.webservice-module.html"><code>bioMoby.webservice</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TEST-module.html"><code>TEST</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Testout-module.html"><code>Testout</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Text_plain-module.html"><code>Text_plain</code></a></td>
@@ -1136,8 +1314,22 @@
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.Tree-module.html"><code>Tree</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TropGENE_ACCESSION-module.html"><code>TropGENE_ACCESSION</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TropGENE_Diversity_Matrix-module.html"><code>TropGENE_Diversity_Matrix</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
+  <tr><td width="15%"><a href="bioMoby.ontology.TropGENE_LOCUS-module.html"><code>TropGENE_LOCUS</code></a></td>
+    <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="__builtin__.type-class.html"><code>type</code></a></td>
     <td>Class in module <code>__builtin__</code></td></tr>
+  <tr><td width="15%"><a href="ZSI.TC.TypeCode-class.html#typechecks"><code>typechecks</code></a></td>
+    <td>Variable in class <a href="ZSI.TC.TypeCode-class.html"><code>ZSI.TC.TypeCode</code></a></td></tr>
+  <tr><td width="15%"><a href="ZSI.TC.TypeCode-class.html#typechecks"><code>typechecks</code></a></td>
+    <td>Variable in class <a href="ZSI.TC.TypeCode-class.html"><code>ZSI.TC.TypeCode</code></a></td></tr>
+  <tr><td width="15%"><a href="ZSI.TC.TypeCode-class.html"><code>TypeCode</code></a></td>
+    <td>Class in module <code>ZSI.TC</code></td></tr>
+  <tr><td width="15%"><a href="bioMoby.webservice.TCBioMoby.Body-class.html#typecode"><code>typecode</code></a></td>
+    <td>Variable in class <a href="bioMoby.webservice.TCBioMoby.Body-class.html"><code>bioMoby.webservice.TCBioMoby.Body</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.ontology.VirtualSequence-module.html"><code>VirtualSequence</code></a></td>
     <td>Module in package <a href="bioMoby.ontology-module.html"><code>bioMoby.ontology</code></a></td></tr>
   <tr><td width="15%"><a href="bioMoby.webservice-module.html"><code>webservice</code></a></td>
@@ -1156,13 +1348,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th bgcolor="#70b0f0" class="navselect">&nbsp;&nbsp;&nbsp;Index&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:30 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/threading.Thread-class.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/threading.Thread-class.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/threading.Thread-class.html	2004/12/09 14:41:34	1.3
@@ -16,7 +16,13 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -140,13 +146,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:29 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:06 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
   </tr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.mobyClient-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.mobyDataTypes-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.mobyExceptions-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.mobyMarshal-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.mobyRegister-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.mobyService-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology-module.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology-module.html	2004/12/09 14:41:35	1.3
@@ -22,6 +22,10 @@
 <a target="mainFrame" href="bioMoby.ontology.B64_Encoded_PNG-module.html">B64_Encoded_PNG</a><br />
 <a target="mainFrame" href="bioMoby.ontology.B64_Encoded_Postscript-module.html">B64_Encoded_Postscript</a><br />
 <a target="mainFrame" href="bioMoby.ontology.BasicGFFSequenceFeature-module.html">BasicGFFSequenceFeature</a><br />
+<a target="mainFrame" href="bioMoby.ontology.ClustalAlnFormattedText-module.html">ClustalAlnFormattedText</a><br />
+<a target="mainFrame" href="bioMoby.ontology.CommentedAASequence-module.html">CommentedAASequence</a><br />
+<a target="mainFrame" href="bioMoby.ontology.CommentedDNASequence-module.html">CommentedDNASequence</a><br />
+<a target="mainFrame" href="bioMoby.ontology.CommentedRNASequence-module.html">CommentedRNASequence</a><br />
 <a target="mainFrame" href="bioMoby.ontology.DateTime-module.html">DateTime</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Decypher_Text-module.html">Decypher_Text</a><br />
 <a target="mainFrame" href="bioMoby.ontology.DNASequence-module.html">DNASequence</a><br />
@@ -29,6 +33,8 @@
 <a target="mainFrame" href="bioMoby.ontology.Edge-module.html">Edge</a><br />
 <a target="mainFrame" href="bioMoby.ontology.EmblFlatfile-module.html">EmblFlatfile</a><br />
 <a target="mainFrame" href="bioMoby.ontology.FASTA-module.html">FASTA</a><br />
+<a target="mainFrame" href="bioMoby.ontology.FASTA_AA-module.html">FASTA_AA</a><br />
+<a target="mainFrame" href="bioMoby.ontology.FASTA_NA-module.html">FASTA_NA</a><br />
 <a target="mainFrame" href="bioMoby.ontology.GenbankFlatfile-module.html">GenbankFlatfile</a><br />
 <a target="mainFrame" href="bioMoby.ontology.GenericSequence-module.html">GenericSequence</a><br />
 <a target="mainFrame" href="bioMoby.ontology.GeneticElement-module.html">GeneticElement</a><br />
@@ -42,6 +48,7 @@
 <a target="mainFrame" href="bioMoby.ontology.Global_Keyword-module.html">Global_Keyword</a><br />
 <a target="mainFrame" href="bioMoby.ontology.GO_Term-module.html">GO_Term</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Haplotyping_Study_obj-module.html">Haplotyping_Study_obj</a><br />
+<a target="mainFrame" href="bioMoby.ontology.HBond_Pair-module.html">HBond_Pair</a><br />
 <a target="mainFrame" href="bioMoby.ontology.HCA_picture-module.html">HCA_picture</a><br />
 <a target="mainFrame" href="bioMoby.ontology.ICIS_Query-module.html">ICIS_Query</a><br />
 <a target="mainFrame" href="bioMoby.ontology.ICIS_Query2-module.html">ICIS_Query2</a><br />
@@ -51,12 +58,15 @@
 <a target="mainFrame" href="bioMoby.ontology.Interaction_partner-module.html">Interaction_partner</a><br />
 <a target="mainFrame" href="bioMoby.ontology.InteractionMethod-module.html">InteractionMethod</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Interactor-module.html">Interactor</a><br />
+<a target="mainFrame" href="bioMoby.ontology.MEME_Text-module.html">MEME_Text</a><br />
+<a target="mainFrame" href="bioMoby.ontology.MGIS_ACCESSION-module.html">MGIS_ACCESSION</a><br />
 <a target="mainFrame" href="bioMoby.ontology.MMP_Locus-module.html">MMP_Locus</a><br />
 <a target="mainFrame" href="bioMoby.ontology.MO_Term_Test-module.html">MO_Term_Test</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Multi_key_value_pair-module.html">Multi_key_value_pair</a><br />
 <a target="mainFrame" href="bioMoby.ontology.MyTree-module.html">MyTree</a><br />
 <a target="mainFrame" href="bioMoby.ontology.NCBI_BLAST_Text-module.html">NCBI_BLAST_Text</a><br />
 <a target="mainFrame" href="bioMoby.ontology.NCBI_Blast_XML-module.html">NCBI_Blast_XML</a><br />
+<a target="mainFrame" href="bioMoby.ontology.NCBI_MEME_Text-module.html">NCBI_MEME_Text</a><br />
 <a target="mainFrame" href="bioMoby.ontology.NucleotideSequence-module.html">NucleotideSequence</a><br />
 <a target="mainFrame" href="bioMoby.ontology.PDBFormattedText-module.html">PDBFormattedText</a><br />
 <a target="mainFrame" href="bioMoby.ontology.PDGJOB-module.html">PDGJOB</a><br />
@@ -73,10 +83,12 @@
 <a target="mainFrame" href="bioMoby.ontology.Simple_key_value_pair-module.html">Simple_key_value_pair</a><br />
 <a target="mainFrame" href="bioMoby.ontology.SimpleAnnotatedGIFImage-module.html">SimpleAnnotatedGIFImage</a><br />
 <a target="mainFrame" href="bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html">SimpleAnnotatedJPEGImage</a><br />
+<a target="mainFrame" href="bioMoby.ontology.SINGER_ACCESSION-module.html">SINGER_ACCESSION</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Snp_allele-module.html">Snp_allele</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Snp_genotype-module.html">Snp_genotype</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Study-module.html">Study</a><br />
 <a target="mainFrame" href="bioMoby.ontology.TargetP_result-module.html">TargetP_result</a><br />
+<a target="mainFrame" href="bioMoby.ontology.TEST-module.html">TEST</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Testout-module.html">Testout</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Text_plain-module.html">Text_plain</a><br />
 <a target="mainFrame" href="bioMoby.ontology.TextBase64-module.html">TextBase64</a><br />
@@ -87,6 +99,9 @@
 <a target="mainFrame" href="bioMoby.ontology.TextXml-module.html">TextXml</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Trait_Details-module.html">Trait_Details</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Tree-module.html">Tree</a><br />
+<a target="mainFrame" href="bioMoby.ontology.TropGENE_ACCESSION-module.html">TropGENE_ACCESSION</a><br />
+<a target="mainFrame" href="bioMoby.ontology.TropGENE_Diversity_Matrix-module.html">TropGENE_Diversity_Matrix</a><br />
+<a target="mainFrame" href="bioMoby.ontology.TropGENE_LOCUS-module.html">TropGENE_LOCUS</a><br />
 <a target="mainFrame" href="bioMoby.ontology.VirtualSequence-module.html">VirtualSequence</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Wildcard_Query-module.html">Wildcard_Query</a><br />
 <a target="mainFrame" href="bioMoby.ontology.WU_BLAST_Text-module.html">WU_BLAST_Text</a><br />

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diff -u -r1.2 -r1.3

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diff -u -r1.2 -r1.3

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diff -u -r1.2 -r1.3

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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.ICIS_Query2-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.ICIS_Query3-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.IntAct_XML-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.NCBI_Blast_XML-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.RNASequence-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.SchematikonMotifSupport-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.SchematikonSegmentAttributes-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.SchematikonSegmentID-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.SchematikonStructureAnnotation-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.SchematikonVorocodeName-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.Scored_acronym_string-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.Snp_genotype-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.Testout-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.TextFormatted-module.html,v
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.TextHtml-module.html,v
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diff -u -r1.2 -r1.3

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diff -u -r1.2 -r1.3

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diff -u -r1.2 -r1.3

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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.Text_plain-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.VirtualSequence-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.WU_BLAST_Text-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.ontology.Wildcard_Query-module.html,v
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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.webservice-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.webservice-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.webservice-module.html	2004/12/09 14:41:35	1.3
@@ -15,6 +15,7 @@
 <font size="+1"><b>Modules</b></font><br />
 <a target="mainFrame" href="bioMoby.webservice.Dispatcher-module.html">Dispatcher</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Invocators-module.html">Invocators</a><br />
+<a target="mainFrame" href="bioMoby.webservice.TCBioMoby-module.html">TCBioMoby</a><br />
 <br />
 
 <hr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.webservice.Dispatcher-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.webservice.Dispatcher-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.webservice.Dispatcher-module.html	2004/12/09 14:41:35	1.3
@@ -13,9 +13,12 @@
 
 <!-- =========== START OF CLASSES =========== -->
 <font size="+1"><b>Classes</b></font><br />
+<a target="mainFrame" href="bioMoby.webservice.Dispatcher.AbstractDispatcher-class.html">AbstractDispatcher</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Dispatcher.Dispatcher-class.html">Dispatcher</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Dispatcher.LockedIterator-class.html">LockedIterator</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Dispatcher.MultiThread-class.html">MultiThread</a><br />
+<a target="mainFrame" href="bioMoby.webservice.Dispatcher.PBSDispatcher-class.html">PBSDispatcher</a><br />
+<a target="mainFrame" href="bioMoby.webservice.Dispatcher.SimpleDispatcher-class.html">SimpleDispatcher</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Dispatcher.SingleThread-class.html">SingleThread</a><br />
 <br />
 

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RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.webservice.Invocators-module.html,v
retrieving revision 1.2
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diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.webservice.Invocators-module.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/toc-bioMoby.webservice.Invocators-module.html	2004/12/09 14:41:35	1.3
@@ -16,8 +16,14 @@
 <a target="mainFrame" href="bioMoby.webservice.Invocators.CGIPostInvocator-class.html">CGIPostInvocator</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Invocators.CGIPostMInvocator-class.html">CGIPostMInvocator</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Invocators.GeneralInvocator-class.html">GeneralInvocator</a><br />
-<a target="mainFrame" href="bioMoby.webservice.Invocators.InvocatorError-class.html">InvocatorError</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Invocators.LocalInvocator-class.html">LocalInvocator</a><br />
+<a target="mainFrame" href="bioMoby.webservice.Invocators.PBSInvocator-class.html">PBSInvocator</a><br />
+<a target="mainFrame" href="bioMoby.webservice.Invocators.QsubParameters-class.html">QsubParameters</a><br />
+<br />
+
+<!-- =========== START OF EXCEPTIONS =========== -->
+<font size="+1"><b>Exceptions</b></font><br />
+<a target="mainFrame" href="bioMoby.webservice.Invocators.InvocatorError-class.html">InvocatorError</a><br />
 <br />
 
 <hr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/toc-everything.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/toc-everything.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/toc-everything.html	2004/12/09 14:41:35	1.3
@@ -45,6 +45,10 @@
 <a target="mainFrame" href="bioMoby.ontology.B64_Encoded_PNG.MobyB64_Encoded_PNG-class.html">bioMoby.ontology.B64_Encoded_PNG.MobyB64_Encoded_PNG</a><br />
 <a target="mainFrame" href="bioMoby.ontology.B64_Encoded_Postscript.MobyB64_Encoded_Postscript-class.html">bioMoby.ontology.B64_Encoded_Postscript.MobyB64_Encoded_Postscript</a><br />
 <a target="mainFrame" href="bioMoby.ontology.BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature-class.html">bioMoby.ontology.BasicGFFSequenceFeature.MobyBasicGFFSequenceFeature</a><br />
+<a target="mainFrame" href="bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText-class.html">bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText</a><br />
+<a target="mainFrame" href="bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence-class.html">bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence</a><br />
+<a target="mainFrame" href="bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence-class.html">bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence</a><br />
+<a target="mainFrame" href="bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence-class.html">bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence</a><br />
 <a target="mainFrame" href="bioMoby.ontology.DateTime.MobyDateTime-class.html">bioMoby.ontology.DateTime.MobyDateTime</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Decypher_Text.MobyDecypher_Text-class.html">bioMoby.ontology.Decypher_Text.MobyDecypher_Text</a><br />
 <a target="mainFrame" href="bioMoby.ontology.DNASequence.MobyDNASequence-class.html">bioMoby.ontology.DNASequence.MobyDNASequence</a><br />
@@ -52,6 +56,8 @@
 <a target="mainFrame" href="bioMoby.ontology.Edge.MobyEdge-class.html">bioMoby.ontology.Edge.MobyEdge</a><br />
 <a target="mainFrame" href="bioMoby.ontology.EmblFlatfile.MobyEmblFlatfile-class.html">bioMoby.ontology.EmblFlatfile.MobyEmblFlatfile</a><br />
 <a target="mainFrame" href="bioMoby.ontology.FASTA.MobyFASTA-class.html">bioMoby.ontology.FASTA.MobyFASTA</a><br />
+<a target="mainFrame" href="bioMoby.ontology.FASTA_AA.MobyFASTA_AA-class.html">bioMoby.ontology.FASTA_AA.MobyFASTA_AA</a><br />
+<a target="mainFrame" href="bioMoby.ontology.FASTA_NA.MobyFASTA_NA-class.html">bioMoby.ontology.FASTA_NA.MobyFASTA_NA</a><br />
 <a target="mainFrame" href="bioMoby.ontology.GenbankFlatfile.MobyGenbankFlatfile-class.html">bioMoby.ontology.GenbankFlatfile.MobyGenbankFlatfile</a><br />
 <a target="mainFrame" href="bioMoby.ontology.GenericSequence.MobyGenericSequence-class.html">bioMoby.ontology.GenericSequence.MobyGenericSequence</a><br />
 <a target="mainFrame" href="bioMoby.ontology.GeneticElement.MobyGeneticElement-class.html">bioMoby.ontology.GeneticElement.MobyGeneticElement</a><br />
@@ -65,6 +71,7 @@
 <a target="mainFrame" href="bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword-class.html">bioMoby.ontology.Global_Keyword.MobyGlobal_Keyword</a><br />
 <a target="mainFrame" href="bioMoby.ontology.GO_Term.MobyGO_Term-class.html">bioMoby.ontology.GO_Term.MobyGO_Term</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj-class.html">bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj</a><br />
+<a target="mainFrame" href="bioMoby.ontology.HBond_Pair.MobyHBond_Pair-class.html">bioMoby.ontology.HBond_Pair.MobyHBond_Pair</a><br />
 <a target="mainFrame" href="bioMoby.ontology.HCA_picture.MobyHCA_picture-class.html">bioMoby.ontology.HCA_picture.MobyHCA_picture</a><br />
 <a target="mainFrame" href="bioMoby.ontology.ICIS_Query.MobyICIS_Query-class.html">bioMoby.ontology.ICIS_Query.MobyICIS_Query</a><br />
 <a target="mainFrame" href="bioMoby.ontology.ICIS_Query2.MobyICIS_Query2-class.html">bioMoby.ontology.ICIS_Query2.MobyICIS_Query2</a><br />
@@ -74,12 +81,15 @@
 <a target="mainFrame" href="bioMoby.ontology.Interaction_partner.MobyInteraction_partner-class.html">bioMoby.ontology.Interaction_partner.MobyInteraction_partner</a><br />
 <a target="mainFrame" href="bioMoby.ontology.InteractionMethod.MobyInteractionMethod-class.html">bioMoby.ontology.InteractionMethod.MobyInteractionMethod</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Interactor.MobyInteractor-class.html">bioMoby.ontology.Interactor.MobyInteractor</a><br />
+<a target="mainFrame" href="bioMoby.ontology.MEME_Text.MobyMEME_Text-class.html">bioMoby.ontology.MEME_Text.MobyMEME_Text</a><br />
+<a target="mainFrame" href="bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION-class.html">bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION</a><br />
 <a target="mainFrame" href="bioMoby.ontology.MMP_Locus.MobyMMP_Locus-class.html">bioMoby.ontology.MMP_Locus.MobyMMP_Locus</a><br />
 <a target="mainFrame" href="bioMoby.ontology.MO_Term_Test.MobyMO_Term_Test-class.html">bioMoby.ontology.MO_Term_Test.MobyMO_Term_Test</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Multi_key_value_pair.MobyMulti_key_value_pair-class.html">bioMoby.ontology.Multi_key_value_pair.MobyMulti_key_value_pair</a><br />
 <a target="mainFrame" href="bioMoby.ontology.MyTree.MobyMyTree-class.html">bioMoby.ontology.MyTree.MobyMyTree</a><br />
 <a target="mainFrame" href="bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text-class.html">bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text</a><br />
 <a target="mainFrame" href="bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML-class.html">bioMoby.ontology.NCBI_Blast_XML.MobyNCBI_Blast_XML</a><br />
+<a target="mainFrame" href="bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text-class.html">bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text</a><br />
 <a target="mainFrame" href="bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence-class.html">bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence</a><br />
 <a target="mainFrame" href="bioMoby.ontology.PDBFormattedText.MobyPDBFormattedText-class.html">bioMoby.ontology.PDBFormattedText.MobyPDBFormattedText</a><br />
 <a target="mainFrame" href="bioMoby.ontology.PDGJOB.MobyPDGJOB-class.html">bioMoby.ontology.PDGJOB.MobyPDGJOB</a><br />
@@ -96,10 +106,12 @@
 <a target="mainFrame" href="bioMoby.ontology.Simple_key_value_pair.MobySimple_key_value_pair-class.html">bioMoby.ontology.Simple_key_value_pair.MobySimple_key_value_pair</a><br />
 <a target="mainFrame" href="bioMoby.ontology.SimpleAnnotatedGIFImage.MobySimpleAnnotatedGIFImage-class.html">bioMoby.ontology.SimpleAnnotatedGIFImage.MobySimpleAnnotatedGIFImage</a><br />
 <a target="mainFrame" href="bioMoby.ontology.SimpleAnnotatedJPEGImage.MobySimpleAnnotatedJPEGImage-class.html">bioMoby.ontology.SimpleAnnotatedJPEGImage.MobySimpleAnnotatedJPEGImage</a><br />
+<a target="mainFrame" href="bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION-class.html">bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Snp_allele.MobySnp_allele-class.html">bioMoby.ontology.Snp_allele.MobySnp_allele</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Snp_genotype.MobySnp_genotype-class.html">bioMoby.ontology.Snp_genotype.MobySnp_genotype</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Study.MobyStudy-class.html">bioMoby.ontology.Study.MobyStudy</a><br />
 <a target="mainFrame" href="bioMoby.ontology.TargetP_result.MobyTargetP_result-class.html">bioMoby.ontology.TargetP_result.MobyTargetP_result</a><br />
+<a target="mainFrame" href="bioMoby.ontology.TEST.MobyTEST-class.html">bioMoby.ontology.TEST.MobyTEST</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Testout.MobyTestout-class.html">bioMoby.ontology.Testout.MobyTestout</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Text_plain.MobyText_plain-class.html">bioMoby.ontology.Text_plain.MobyText_plain</a><br />
 <a target="mainFrame" href="bioMoby.ontology.TextBase64.MobyTextBase64-class.html">bioMoby.ontology.TextBase64.MobyTextBase64</a><br />
@@ -110,18 +122,26 @@
 <a target="mainFrame" href="bioMoby.ontology.TextXml.MobyTextXml-class.html">bioMoby.ontology.TextXml.MobyTextXml</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Trait_Details.MobyTrait_Details-class.html">bioMoby.ontology.Trait_Details.MobyTrait_Details</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Tree.MobyTree-class.html">bioMoby.ontology.Tree.MobyTree</a><br />
+<a target="mainFrame" href="bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION-class.html">bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION</a><br />
+<a target="mainFrame" href="bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix-class.html">bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix</a><br />
+<a target="mainFrame" href="bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS-class.html">bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS</a><br />
 <a target="mainFrame" href="bioMoby.ontology.VirtualSequence.MobyVirtualSequence-class.html">bioMoby.ontology.VirtualSequence.MobyVirtualSequence</a><br />
 <a target="mainFrame" href="bioMoby.ontology.Wildcard_Query.MobyWildcard_Query-class.html">bioMoby.ontology.Wildcard_Query.MobyWildcard_Query</a><br />
 <a target="mainFrame" href="bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text-class.html">bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text</a><br />
+<a target="mainFrame" href="bioMoby.webservice.Dispatcher.AbstractDispatcher-class.html">bioMoby.webservice.Dispatcher.AbstractDispatcher</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Dispatcher.Dispatcher-class.html">bioMoby.webservice.Dispatcher.Dispatcher</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Dispatcher.LockedIterator-class.html">bioMoby.webservice.Dispatcher.LockedIterator</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Dispatcher.MultiThread-class.html">bioMoby.webservice.Dispatcher.MultiThread</a><br />
+<a target="mainFrame" href="bioMoby.webservice.Dispatcher.PBSDispatcher-class.html">bioMoby.webservice.Dispatcher.PBSDispatcher</a><br />
+<a target="mainFrame" href="bioMoby.webservice.Dispatcher.SimpleDispatcher-class.html">bioMoby.webservice.Dispatcher.SimpleDispatcher</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Dispatcher.SingleThread-class.html">bioMoby.webservice.Dispatcher.SingleThread</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Invocators.CGIPostInvocator-class.html">bioMoby.webservice.Invocators.CGIPostInvocator</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Invocators.CGIPostMInvocator-class.html">bioMoby.webservice.Invocators.CGIPostMInvocator</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Invocators.GeneralInvocator-class.html">bioMoby.webservice.Invocators.GeneralInvocator</a><br />
-<a target="mainFrame" href="bioMoby.webservice.Invocators.InvocatorError-class.html">bioMoby.webservice.Invocators.InvocatorError</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Invocators.LocalInvocator-class.html">bioMoby.webservice.Invocators.LocalInvocator</a><br />
+<a target="mainFrame" href="bioMoby.webservice.Invocators.PBSInvocator-class.html">bioMoby.webservice.Invocators.PBSInvocator</a><br />
+<a target="mainFrame" href="bioMoby.webservice.Invocators.QsubParameters-class.html">bioMoby.webservice.Invocators.QsubParameters</a><br />
+<a target="mainFrame" href="bioMoby.webservice.TCBioMoby.Body-class.html">bioMoby.webservice.TCBioMoby.Body</a><br />
 <br />
 
 <!-- =========== START OF ALL EXCEPTIONS =========== -->
@@ -132,6 +152,7 @@
 <a target="mainFrame" href="bioMoby.mobyExceptions.ENotAWSMethod-class.html">bioMoby.mobyExceptions.ENotAWSMethod</a><br />
 <a target="mainFrame" href="bioMoby.mobyExceptions.ETypeMismatch-class.html">bioMoby.mobyExceptions.ETypeMismatch</a><br />
 <a target="mainFrame" href="bioMoby.webservice.Dispatcher.EDispatchError-class.html">bioMoby.webservice.Dispatcher.EDispatchError</a><br />
+<a target="mainFrame" href="bioMoby.webservice.Invocators.InvocatorError-class.html">bioMoby.webservice.Invocators.InvocatorError</a><br />
 <br />
 
 <hr>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/toc.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/toc.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/toc.html	2004/12/09 14:41:35	1.3
@@ -35,6 +35,10 @@
 <a target="moduleFrame" href="toc-bioMoby.ontology.B64_Encoded_PNG-module.html">bioMoby.ontology.B64_Encoded_PNG</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.B64_Encoded_Postscript-module.html">bioMoby.ontology.B64_Encoded_Postscript</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.BasicGFFSequenceFeature-module.html">bioMoby.ontology.BasicGFFSequenceFeature</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.ClustalAlnFormattedText-module.html">bioMoby.ontology.ClustalAlnFormattedText</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.CommentedAASequence-module.html">bioMoby.ontology.CommentedAASequence</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.CommentedDNASequence-module.html">bioMoby.ontology.CommentedDNASequence</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.CommentedRNASequence-module.html">bioMoby.ontology.CommentedRNASequence</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.DateTime-module.html">bioMoby.ontology.DateTime</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.Decypher_Text-module.html">bioMoby.ontology.Decypher_Text</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.DNASequence-module.html">bioMoby.ontology.DNASequence</a><br />
@@ -42,6 +46,8 @@
 <a target="moduleFrame" href="toc-bioMoby.ontology.Edge-module.html">bioMoby.ontology.Edge</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.EmblFlatfile-module.html">bioMoby.ontology.EmblFlatfile</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.FASTA-module.html">bioMoby.ontology.FASTA</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.FASTA_AA-module.html">bioMoby.ontology.FASTA_AA</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.FASTA_NA-module.html">bioMoby.ontology.FASTA_NA</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.GenbankFlatfile-module.html">bioMoby.ontology.GenbankFlatfile</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.GenericSequence-module.html">bioMoby.ontology.GenericSequence</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.GeneticElement-module.html">bioMoby.ontology.GeneticElement</a><br />
@@ -55,6 +61,7 @@
 <a target="moduleFrame" href="toc-bioMoby.ontology.Global_Keyword-module.html">bioMoby.ontology.Global_Keyword</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.GO_Term-module.html">bioMoby.ontology.GO_Term</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.Haplotyping_Study_obj-module.html">bioMoby.ontology.Haplotyping_Study_obj</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.HBond_Pair-module.html">bioMoby.ontology.HBond_Pair</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.HCA_picture-module.html">bioMoby.ontology.HCA_picture</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.ICIS_Query-module.html">bioMoby.ontology.ICIS_Query</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.ICIS_Query2-module.html">bioMoby.ontology.ICIS_Query2</a><br />
@@ -64,12 +71,15 @@
 <a target="moduleFrame" href="toc-bioMoby.ontology.Interaction_partner-module.html">bioMoby.ontology.Interaction_partner</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.InteractionMethod-module.html">bioMoby.ontology.InteractionMethod</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.Interactor-module.html">bioMoby.ontology.Interactor</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.MEME_Text-module.html">bioMoby.ontology.MEME_Text</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.MGIS_ACCESSION-module.html">bioMoby.ontology.MGIS_ACCESSION</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.MMP_Locus-module.html">bioMoby.ontology.MMP_Locus</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.MO_Term_Test-module.html">bioMoby.ontology.MO_Term_Test</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.Multi_key_value_pair-module.html">bioMoby.ontology.Multi_key_value_pair</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.MyTree-module.html">bioMoby.ontology.MyTree</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.NCBI_BLAST_Text-module.html">bioMoby.ontology.NCBI_BLAST_Text</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.NCBI_Blast_XML-module.html">bioMoby.ontology.NCBI_Blast_XML</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.NCBI_MEME_Text-module.html">bioMoby.ontology.NCBI_MEME_Text</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.NucleotideSequence-module.html">bioMoby.ontology.NucleotideSequence</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.PDBFormattedText-module.html">bioMoby.ontology.PDBFormattedText</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.PDGJOB-module.html">bioMoby.ontology.PDGJOB</a><br />
@@ -86,10 +96,12 @@
 <a target="moduleFrame" href="toc-bioMoby.ontology.Simple_key_value_pair-module.html">bioMoby.ontology.Simple_key_value_pair</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.SimpleAnnotatedGIFImage-module.html">bioMoby.ontology.SimpleAnnotatedGIFImage</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html">bioMoby.ontology.SimpleAnnotatedJPEGImage</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.SINGER_ACCESSION-module.html">bioMoby.ontology.SINGER_ACCESSION</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.Snp_allele-module.html">bioMoby.ontology.Snp_allele</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.Snp_genotype-module.html">bioMoby.ontology.Snp_genotype</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.Study-module.html">bioMoby.ontology.Study</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.TargetP_result-module.html">bioMoby.ontology.TargetP_result</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.TEST-module.html">bioMoby.ontology.TEST</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.Testout-module.html">bioMoby.ontology.Testout</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.Text_plain-module.html">bioMoby.ontology.Text_plain</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.TextBase64-module.html">bioMoby.ontology.TextBase64</a><br />
@@ -100,11 +112,15 @@
 <a target="moduleFrame" href="toc-bioMoby.ontology.TextXml-module.html">bioMoby.ontology.TextXml</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.Trait_Details-module.html">bioMoby.ontology.Trait_Details</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.Tree-module.html">bioMoby.ontology.Tree</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.TropGENE_ACCESSION-module.html">bioMoby.ontology.TropGENE_ACCESSION</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.TropGENE_Diversity_Matrix-module.html">bioMoby.ontology.TropGENE_Diversity_Matrix</a><br />
+<a target="moduleFrame" href="toc-bioMoby.ontology.TropGENE_LOCUS-module.html">bioMoby.ontology.TropGENE_LOCUS</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.VirtualSequence-module.html">bioMoby.ontology.VirtualSequence</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.Wildcard_Query-module.html">bioMoby.ontology.Wildcard_Query</a><br />
 <a target="moduleFrame" href="toc-bioMoby.ontology.WU_BLAST_Text-module.html">bioMoby.ontology.WU_BLAST_Text</a><br />
 <a target="moduleFrame" href="toc-bioMoby.webservice.Dispatcher-module.html">bioMoby.webservice.Dispatcher</a><br />
 <a target="moduleFrame" href="toc-bioMoby.webservice.Invocators-module.html">bioMoby.webservice.Invocators</a><br />
+<a target="moduleFrame" href="toc-bioMoby.webservice.TCBioMoby-module.html">bioMoby.webservice.TCBioMoby</a><br />
 
 <br /><hr>
 <font size="-2">[<a href="../private/toc.html">show&nbsp;private</a>&nbsp;|&nbsp;hide&nbsp;private]</font>

===================================================================
RCS file: /home/repository/moby/moby-live/Python/doc/public/trees.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/doc/public/trees.html	2004/12/08 11:15:27	1.2
+++ /home/repository/moby/moby-live/Python/doc/public/trees.html	2004/12/09 14:41:35	1.3
@@ -16,7 +16,13 @@
     <th bgcolor="#70b0f0" class="navselect">&nbsp;&nbsp;&nbsp;Trees&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 <table width="100%" cellpadding="0" cellspacing="0">
@@ -51,6 +57,10 @@
         <li> <b><a href="bioMoby.ontology.B64_Encoded_PNG-module.html"><code>B64_Encoded_PNG</code></a></b>
         <li> <b><a href="bioMoby.ontology.B64_Encoded_Postscript-module.html"><code>B64_Encoded_Postscript</code></a></b>
         <li> <b><a href="bioMoby.ontology.BasicGFFSequenceFeature-module.html"><code>BasicGFFSequenceFeature</code></a></b>
+        <li> <b><a href="bioMoby.ontology.ClustalAlnFormattedText-module.html"><code>ClustalAlnFormattedText</code></a></b>
+        <li> <b><a href="bioMoby.ontology.CommentedAASequence-module.html"><code>CommentedAASequence</code></a></b>
+        <li> <b><a href="bioMoby.ontology.CommentedDNASequence-module.html"><code>CommentedDNASequence</code></a></b>
+        <li> <b><a href="bioMoby.ontology.CommentedRNASequence-module.html"><code>CommentedRNASequence</code></a></b>
         <li> <b><a href="bioMoby.ontology.DateTime-module.html"><code>DateTime</code></a></b>
         <li> <b><a href="bioMoby.ontology.Decypher_Text-module.html"><code>Decypher_Text</code></a></b>
         <li> <b><a href="bioMoby.ontology.DNASequence-module.html"><code>DNASequence</code></a></b>
@@ -58,6 +68,8 @@
         <li> <b><a href="bioMoby.ontology.Edge-module.html"><code>Edge</code></a></b>
         <li> <b><a href="bioMoby.ontology.EmblFlatfile-module.html"><code>EmblFlatfile</code></a></b>
         <li> <b><a href="bioMoby.ontology.FASTA-module.html"><code>FASTA</code></a></b>
+        <li> <b><a href="bioMoby.ontology.FASTA_AA-module.html"><code>FASTA_AA</code></a></b>
+        <li> <b><a href="bioMoby.ontology.FASTA_NA-module.html"><code>FASTA_NA</code></a></b>
         <li> <b><a href="bioMoby.ontology.GenbankFlatfile-module.html"><code>GenbankFlatfile</code></a></b>
         <li> <b><a href="bioMoby.ontology.GenericSequence-module.html"><code>GenericSequence</code></a></b>
         <li> <b><a href="bioMoby.ontology.GeneticElement-module.html"><code>GeneticElement</code></a></b>
@@ -71,6 +83,7 @@
         <li> <b><a href="bioMoby.ontology.Global_Keyword-module.html"><code>Global_Keyword</code></a></b>
         <li> <b><a href="bioMoby.ontology.GO_Term-module.html"><code>GO_Term</code></a></b>
         <li> <b><a href="bioMoby.ontology.Haplotyping_Study_obj-module.html"><code>Haplotyping_Study_obj</code></a></b>
+        <li> <b><a href="bioMoby.ontology.HBond_Pair-module.html"><code>HBond_Pair</code></a></b>
         <li> <b><a href="bioMoby.ontology.HCA_picture-module.html"><code>HCA_picture</code></a></b>
         <li> <b><a href="bioMoby.ontology.ICIS_Query-module.html"><code>ICIS_Query</code></a></b>
         <li> <b><a href="bioMoby.ontology.ICIS_Query2-module.html"><code>ICIS_Query2</code></a></b>
@@ -80,12 +93,15 @@
         <li> <b><a href="bioMoby.ontology.Interaction_partner-module.html"><code>Interaction_partner</code></a></b>
         <li> <b><a href="bioMoby.ontology.InteractionMethod-module.html"><code>InteractionMethod</code></a></b>
         <li> <b><a href="bioMoby.ontology.Interactor-module.html"><code>Interactor</code></a></b>
+        <li> <b><a href="bioMoby.ontology.MEME_Text-module.html"><code>MEME_Text</code></a></b>
+        <li> <b><a href="bioMoby.ontology.MGIS_ACCESSION-module.html"><code>MGIS_ACCESSION</code></a></b>
         <li> <b><a href="bioMoby.ontology.MMP_Locus-module.html"><code>MMP_Locus</code></a></b>
         <li> <b><a href="bioMoby.ontology.MO_Term_Test-module.html"><code>MO_Term_Test</code></a></b>
         <li> <b><a href="bioMoby.ontology.Multi_key_value_pair-module.html"><code>Multi_key_value_pair</code></a></b>
         <li> <b><a href="bioMoby.ontology.MyTree-module.html"><code>MyTree</code></a></b>
         <li> <b><a href="bioMoby.ontology.NCBI_BLAST_Text-module.html"><code>NCBI_BLAST_Text</code></a></b>
         <li> <b><a href="bioMoby.ontology.NCBI_Blast_XML-module.html"><code>NCBI_Blast_XML</code></a></b>
+        <li> <b><a href="bioMoby.ontology.NCBI_MEME_Text-module.html"><code>NCBI_MEME_Text</code></a></b>
         <li> <b><a href="bioMoby.ontology.NucleotideSequence-module.html"><code>NucleotideSequence</code></a></b>
         <li> <b><a href="bioMoby.ontology.PDBFormattedText-module.html"><code>PDBFormattedText</code></a></b>
         <li> <b><a href="bioMoby.ontology.PDGJOB-module.html"><code>PDGJOB</code></a></b>
@@ -102,10 +118,12 @@
         <li> <b><a href="bioMoby.ontology.Simple_key_value_pair-module.html"><code>Simple_key_value_pair</code></a></b>
         <li> <b><a href="bioMoby.ontology.SimpleAnnotatedGIFImage-module.html"><code>SimpleAnnotatedGIFImage</code></a></b>
         <li> <b><a href="bioMoby.ontology.SimpleAnnotatedJPEGImage-module.html"><code>SimpleAnnotatedJPEGImage</code></a></b>
+        <li> <b><a href="bioMoby.ontology.SINGER_ACCESSION-module.html"><code>SINGER_ACCESSION</code></a></b>
         <li> <b><a href="bioMoby.ontology.Snp_allele-module.html"><code>Snp_allele</code></a></b>
         <li> <b><a href="bioMoby.ontology.Snp_genotype-module.html"><code>Snp_genotype</code></a></b>
         <li> <b><a href="bioMoby.ontology.Study-module.html"><code>Study</code></a></b>
         <li> <b><a href="bioMoby.ontology.TargetP_result-module.html"><code>TargetP_result</code></a></b>
+        <li> <b><a href="bioMoby.ontology.TEST-module.html"><code>TEST</code></a></b>
         <li> <b><a href="bioMoby.ontology.Testout-module.html"><code>Testout</code></a></b>
         <li> <b><a href="bioMoby.ontology.Text_plain-module.html"><code>Text_plain</code></a></b>
         <li> <b><a href="bioMoby.ontology.TextBase64-module.html"><code>TextBase64</code></a></b>
@@ -116,6 +134,9 @@
         <li> <b><a href="bioMoby.ontology.TextXml-module.html"><code>TextXml</code></a></b>
         <li> <b><a href="bioMoby.ontology.Trait_Details-module.html"><code>Trait_Details</code></a></b>
         <li> <b><a href="bioMoby.ontology.Tree-module.html"><code>Tree</code></a></b>
+        <li> <b><a href="bioMoby.ontology.TropGENE_ACCESSION-module.html"><code>TropGENE_ACCESSION</code></a></b>
+        <li> <b><a href="bioMoby.ontology.TropGENE_Diversity_Matrix-module.html"><code>TropGENE_Diversity_Matrix</code></a></b>
+        <li> <b><a href="bioMoby.ontology.TropGENE_LOCUS-module.html"><code>TropGENE_LOCUS</code></a></b>
         <li> <b><a href="bioMoby.ontology.VirtualSequence-module.html"><code>VirtualSequence</code></a></b>
         <li> <b><a href="bioMoby.ontology.Wildcard_Query-module.html"><code>Wildcard_Query</code></a></b>
         <li> <b><a href="bioMoby.ontology.WU_BLAST_Text-module.html"><code>WU_BLAST_Text</code></a></b>
@@ -124,6 +145,7 @@
       <ul>
         <li> <b><a href="bioMoby.webservice.Dispatcher-module.html"><code>Dispatcher</code></a></b>
         <li> <b><a href="bioMoby.webservice.Invocators-module.html"><code>Invocators</code></a></b>
+        <li> <b><a href="bioMoby.webservice.TCBioMoby-module.html"><code>TCBioMoby</code></a></b>
       </ul>
   </ul>
 </ul>
@@ -131,6 +153,12 @@
 <!-- =========== START OF CLASS HIERARCHY =========== -->
 <h2>Class Hierarchy</h2>
 <ul>
+  <li> <b><a href="ZSI.TC.TypeCode-class.html"><code>ZSI.TC.TypeCode</code></a></b>: <i>
+The parent class for all parseable SOAP types.</i>
+    <ul>
+  <li> <b><a href="bioMoby.webservice.TCBioMoby.Body-class.html"><code>bioMoby.webservice.TCBioMoby.Body</code></a></b>: <i>
+Body Type for the .</i>
+    </ul>
   <li> <b><a href="__builtin__.object-class.html"><code>__builtin__.object</code></a></b>: <i>
 The most base type</i>
     <ul>
@@ -185,6 +213,9 @@
   <li> <b><a href="bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj-class.html"><code>bioMoby.ontology.Haplotyping_Study_obj.MobyHaplotyping_Study_obj</code></a></b>: <i>
 Description: HapMap related objects Author: www.hapmap.org Contact: 
 hapmap&#64;hapmap.org</i>
+  <li> <b><a href="bioMoby.ontology.HBond_Pair.MobyHBond_Pair-class.html"><code>bioMoby.ontology.HBond_Pair.MobyHBond_Pair</code></a></b>: <i>
+Description: Pair of residus Author: bioserv.rpbs.jussieu.fr Contact: 
+rpbs-feedback&#64;ebgm.jussieu.fr</i>
   <li> <b><a href="bioMoby.ontology.ICIS_Query.MobyICIS_Query-class.html"><code>bioMoby.ontology.ICIS_Query.MobyICIS_Query</code></a></b>: <i>
 Description: Text Query for IRIS which allows wildcards Author: 
 www.iris.irri.org Contact: mulat&#64;cgiar.org</i>
@@ -206,6 +237,9 @@
   <li> <b><a href="bioMoby.ontology.Interactor.MobyInteractor-class.html"><code>bioMoby.ontology.Interactor.MobyInteractor</code></a></b>: <i>
 Description: An interactor is a reference to an object, with a role 
 Author: pdg.cnb.uam.es Contact: jmfernandez&#64;cnb.uam.es</i>
+  <li> <b><a href="bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION-class.html"><code>bioMoby.ontology.MGIS_ACCESSION.MobyMGIS_ACCESSION</code></a></b>: <i>
+Description: Accessions in the MGIS database Author: 
+biomoby.inibap.org Contact: m.rouard&#64;cgiar.org</i>
   <li> <b><a href="bioMoby.ontology.MMP_Locus.MobyMMP_Locus-class.html"><code>bioMoby.ontology.MMP_Locus.MobyMMP_Locus</code></a></b>: <i>
 Description: Maize Mapping Project Locus Id Author: www.maizemap.org 
 Contact: coee&#64;missouri.edu</i>
@@ -260,6 +294,9 @@
 Description: Basic key/value pair object for key/value pairs with a 
 1:1 relationship Author: www.illuminae.com Contact: 
 markw&#64;illuminae.com</i>
+  <li> <b><a href="bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION-class.html"><code>bioMoby.ontology.SINGER_ACCESSION.MobySINGER_ACCESSION</code></a></b>: <i>
+Description: Accessions in the SINGER database Author: 
+singer.grinfo.net Contact: rsood&#64;cgiar.org</i>
   <li> <b><a href="bioMoby.mobyDataTypes.MobyString-class.html"><code>bioMoby.mobyDataTypes.MobyString</code></a></b>: <i>
 A string as it is described in the ontology</i>
     <ul>
@@ -315,6 +352,9 @@
 Description: formatted plaintext, where the layout is important to 
 meaning Author: www.illuminae.com Contact: markw&#64;illuminae.com</i>
     <ul>
+  <li> <b><a href="bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText-class.html"><code>bioMoby.ontology.ClustalAlnFormattedText.MobyClustalAlnFormattedText</code></a></b>: <i>
+Description: Clustalw aln format Author: bioserv.rpbs.jussieu.fr 
+Contact: rpbs-feedback&#64;ebgm.jussieu.fr</i>
   <li> <b><a href="bioMoby.ontology.Decypher_Text.MobyDecypher_Text-class.html"><code>bioMoby.ontology.Decypher_Text.MobyDecypher_Text</code></a></b>: <i>
 Description: Alignment text output from Decypher hardware search 
 accelerator Author: coe01.ucalgary.ca Contact: 
@@ -325,6 +365,14 @@
   <li> <b><a href="bioMoby.ontology.FASTA.MobyFASTA-class.html"><code>bioMoby.ontology.FASTA.MobyFASTA</code></a></b>: <i>
 Description: FASTA formatted sequence Author: www.sdsc.edu Contact: 
 steube&#64;sdsc.edu</i>
+    <ul>
+  <li> <b><a href="bioMoby.ontology.FASTA_AA.MobyFASTA_AA-class.html"><code>bioMoby.ontology.FASTA_AA.MobyFASTA_AA</code></a></b>: <i>
+Description: AA sequence in FASTA format Author: 
+bioserv.rpbs.jussieu.fr Contact: rpbs-feedback&#64;ebgm.jussieu.fr</i>
+  <li> <b><a href="bioMoby.ontology.FASTA_NA.MobyFASTA_NA-class.html"><code>bioMoby.ontology.FASTA_NA.MobyFASTA_NA</code></a></b>: <i>
+Description: NA sequence in FASTA format Author: 
+bioserv.rpbs.jussieu.fr Contact: rpbs-feedback&#64;ebgm.jussieu.fr</i>
+    </ul>
   <li> <b><a href="bioMoby.ontology.GenbankFlatfile.MobyGenbankFlatfile-class.html"><code>bioMoby.ontology.GenbankFlatfile.MobyGenbankFlatfile</code></a></b>: <i>
 Description: a formatted plaintext genbank flatfile Author: 
 www.illuminae.com Contact: markw&#64;illuminae.com</i>
@@ -349,12 +397,18 @@
 compliant GFF format) Author: www.illuminae.com Contact: 
 markw&#64;illuminae.com</i>
     </ul>
+  <li> <b><a href="bioMoby.ontology.MEME_Text.MobyMEME_Text-class.html"><code>bioMoby.ontology.MEME_Text.MobyMEME_Text</code></a></b>: <i>
+Description: MEME text output Author: www.sdsc.edu Contact: 
+steube&#64;sdsc.edu</i>
   <li> <b><a href="bioMoby.ontology.MyTree.MobyMyTree-class.html"><code>bioMoby.ontology.MyTree.MobyMyTree</code></a></b>: <i>
 Description: Phylogenetic tree Author: www.phytome.org Contact: 
 dlu&#64;email.unc.edu</i>
   <li> <b><a href="bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text-class.html"><code>bioMoby.ontology.NCBI_BLAST_Text.MobyNCBI_BLAST_Text</code></a></b>: <i>
 Description: Plaintext Blast report from NCBI Blast software Author: 
 www.illuminae.com Contact: markw&#64;illuminae.com</i>
+  <li> <b><a href="bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text-class.html"><code>bioMoby.ontology.NCBI_MEME_Text.MobyNCBI_MEME_Text</code></a></b>: <i>
+Description: MEME text output Author: www.sdsc.edu Contact: 
+steube&#64;sdsc.edu</i>
   <li> <b><a href="bioMoby.ontology.PDBFormattedText.MobyPDBFormattedText-class.html"><code>bioMoby.ontology.PDBFormattedText.MobyPDBFormattedText</code></a></b>: <i>
 Description: PDB formatted text Author: bioserv.rpbs.jussieu.fr 
 Contact: rpbs-feedback&#64;ebgm.jussieu.fr</i>
@@ -362,9 +416,17 @@
 Description: Pubmed article in MEDLINE display format Author: 
 http://prometheus.brc.mcw.edu/MOBY/Central Contact: 
 vnarayan&#64;mcw.edu</i>
+  <li> <b><a href="bioMoby.ontology.TEST.MobyTEST-class.html"><code>bioMoby.ontology.TEST.MobyTEST</code></a></b>: <i>
+Description: FASTA formatted sequence Author: www.sdsc.edu Contact: 
+steube&#64;sdsc.edu</i>
   <li> <b><a href="bioMoby.ontology.Tree.MobyTree-class.html"><code>bioMoby.ontology.Tree.MobyTree</code></a></b>: <i>
 Description: Phylogenetic tree Author: www.phytome.org Contact: 
 dlu&#64;email.unc.edu</i>
+  <li> <b><a href="bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix-class.html"><code>bioMoby.ontology.TropGENE_Diversity_Matrix.MobyTropGENE_Diversity_Matrix</code></a></b>: <i>
+Description: Complete disjunctive tables for diversity analysis : 
+accessions per row, alleles in column, coded in 0/1 with 2 columns per 
+allele (one for presence, one for absence) Author: tropgenedb.cirad.fr 
+Contact: manuel.ruiz&#64;cirad.fr</i>
   <li> <b><a href="bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text-class.html"><code>bioMoby.ontology.WU_BLAST_Text.MobyWU_BLAST_Text</code></a></b>: <i>
 Description: Plaintext Blast report from WU-Blast software Author: 
 www.illuminae.com Contact: markw&#64;illuminae.com</i>
@@ -398,6 +460,12 @@
   <li> <b><a href="bioMoby.ontology.Trait_Details.MobyTrait_Details-class.html"><code>bioMoby.ontology.Trait_Details.MobyTrait_Details</code></a></b>: <i>
 Description: ICIS Property/Trait Information Author: www.iris.irri.org 
 Contact: mulat&#64;cgiar.org</i>
+  <li> <b><a href="bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION-class.html"><code>bioMoby.ontology.TropGENE_ACCESSION.MobyTropGENE_ACCESSION</code></a></b>: <i>
+Description: Germplasm accessions in the TropGENE database Author: 
+tropgenedb.cirad.fr Contact: manuel.ruiz&#64;cirad.fr</i>
+  <li> <b><a href="bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS-class.html"><code>bioMoby.ontology.TropGENE_LOCUS.MobyTropGENE_LOCUS</code></a></b>: <i>
+Description: Loci in the TropGENE database Author: tropgenedb.cirad.fr 
+Contact: manuel.ruiz&#64;cirad.fr</i>
   <li> <b><a href="bioMoby.ontology.VirtualSequence.MobyVirtualSequence-class.html"><code>bioMoby.ontology.VirtualSequence.MobyVirtualSequence</code></a></b>: <i>
 Description: This root of the Sequence object hierarchy carries only 
 the length of the sequence.</i>
@@ -410,6 +478,11 @@
   <li> <b><a href="bioMoby.ontology.AminoAcidSequence.MobyAminoAcidSequence-class.html"><code>bioMoby.ontology.AminoAcidSequence.MobyAminoAcidSequence</code></a></b>: <i>
 Description: Lightweight representation an amino acid sequence Author: 
 www.illuminae.com Contact: markw&#64;illuminae.com</i>
+    <ul>
+  <li> <b><a href="bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence-class.html"><code>bioMoby.ontology.CommentedAASequence.MobyCommentedAASequence</code></a></b>: <i>
+Description: Represents a Amino Acid Sequence including a String 
+(Description).</i>
+    </ul>
   <li> <b><a href="bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence-class.html"><code>bioMoby.ontology.NucleotideSequence.MobyNucleotideSequence</code></a></b>: <i>
 Description: Lightweight representation of any type of nucleotide 
 sequence (DNA, RNA, etc) Author: www.illuminae.com Contact: 
@@ -419,12 +492,20 @@
 Description: Lightweight representation a DNA sequence Author: 
 www.illuminae.com Contact: markw&#64;illuminae.com</i>
     <ul>
+  <li> <b><a href="bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence-class.html"><code>bioMoby.ontology.CommentedDNASequence.MobyCommentedDNASequence</code></a></b>: <i>
+Description: Represents a DNA Sequence including a String 
+(Description).</i>
   <li> <b><a href="bioMoby.ontology.DNASequenceWithGFFFeatures.MobyDNASequenceWithGFFFeatures-class.html"><code>bioMoby.ontology.DNASequenceWithGFFFeatures.MobyDNASequenceWithGFFFeatures</code></a></b>: <i>
 Description: A DNA Sequence including GFF-style features.</i>
     </ul>
   <li> <b><a href="bioMoby.ontology.RNASequence.MobyRNASequence-class.html"><code>bioMoby.ontology.RNASequence.MobyRNASequence</code></a></b>: <i>
 Description: Lightweight representation an RNA sequence Author: 
 www.illuminae.com Contact: markw&#64;illuminae.com</i>
+    <ul>
+  <li> <b><a href="bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence-class.html"><code>bioMoby.ontology.CommentedRNASequence.MobyCommentedRNASequence</code></a></b>: <i>
+Description: Represents a RNA Sequence including a String 
+(Description).</i>
+    </ul>
     </ul>
     </ul>
     </ul>
@@ -477,8 +558,19 @@
   <li> <b><a href="bioMoby.ontology.Snp_genotype.MobySnp_genotype-class.html"><code>bioMoby.ontology.Snp_genotype.MobySnp_genotype</code></a></b>: <i>
 Description: Snp Genotypes Author: www.hapmap.org Contact: 
 hapmap&#64;hapmap.edu</i>
+  <li> <b><a href="bioMoby.webservice.Dispatcher.AbstractDispatcher-class.html"><code>bioMoby.webservice.Dispatcher.AbstractDispatcher</code></a></b>: <i>
+Subclass this one to create your own dispatcher class a Dispatcher 
+class must have a execute method</i>
+    <ul>
   <li> <b><a href="bioMoby.webservice.Dispatcher.Dispatcher-class.html"><code>bioMoby.webservice.Dispatcher.Dispatcher</code></a></b>: <i>
 All Queries in the MobyContent Object are splitted and executed</i>
+  <li> <b><a href="bioMoby.webservice.Dispatcher.SimpleDispatcher-class.html"><code>bioMoby.webservice.Dispatcher.SimpleDispatcher</code></a></b>: <i>
+A simple dispatcher, without execute method</i>
+    <ul>
+  <li> <b><a href="bioMoby.webservice.Dispatcher.PBSDispatcher-class.html"><code>bioMoby.webservice.Dispatcher.PBSDispatcher</code></a></b>: <i>
+Dispatcher for PBS jobs</i>
+    </ul>
+    </ul>
   <li> <b><a href="bioMoby.webservice.Dispatcher.LockedIterator-class.html"><code>bioMoby.webservice.Dispatcher.LockedIterator</code></a></b>: <i>
 Avoid concurrency on the iterator</i>
   <li> <b><a href="bioMoby.webservice.Dispatcher.MultiThread-class.html"><code>bioMoby.webservice.Dispatcher.MultiThread</code></a></b>: <i>
@@ -494,9 +586,13 @@
 CGI script in Post multipart</i>
   <li> <b><a href="bioMoby.webservice.Invocators.LocalInvocator-class.html"><code>bioMoby.webservice.Invocators.LocalInvocator</code></a></b>: <i>
 Invokes local command</i>
+    <ul>
+  <li> <b><a href="bioMoby.webservice.Invocators.PBSInvocator-class.html"><code>bioMoby.webservice.Invocators.PBSInvocator</code></a></b>: <i>
+Invokes a command in a qsub</i>
     </ul>
-  <li> <b><a href="bioMoby.webservice.Invocators.InvocatorError-class.html"><code>bioMoby.webservice.Invocators.InvocatorError</code></a></b>: <i>
-Error during an invocation of method</i>
+    </ul>
+  <li> <b><a href="bioMoby.webservice.Invocators.QsubParameters-class.html"><code>bioMoby.webservice.Invocators.QsubParameters</code></a></b>: <i>
+Parameters for the qsub command</i>
   <li> <b><a href="exceptions.Exception-class.html"><code>exceptions.Exception</code></a></b>: <i>
 Common base class for all exceptions.</i>
     <ul>
@@ -507,6 +603,8 @@
   <li> <b><a href="bioMoby.mobyExceptions.EMethodRetrieveError-class.html"><code>bioMoby.mobyExceptions.EMethodRetrieveError</code></a></b>
   <li> <b><a href="bioMoby.mobyExceptions.ENotAWSMethod-class.html"><code>bioMoby.mobyExceptions.ENotAWSMethod</code></a></b>
   <li> <b><a href="bioMoby.mobyExceptions.ETypeMismatch-class.html"><code>bioMoby.mobyExceptions.ETypeMismatch</code></a></b>
+  <li> <b><a href="bioMoby.webservice.Invocators.InvocatorError-class.html"><code>bioMoby.webservice.Invocators.InvocatorError</code></a></b>: <i>
+Error during an invocation of method</i>
     </ul>
 </ul>
 
@@ -517,13 +615,19 @@
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="trees.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="indices.html">Index</a>&nbsp;&nbsp;&nbsp;</th>
     <th class="navbar">&nbsp;&nbsp;&nbsp;<a class="navbar" href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>
-    <th class="navbar" width="100%"></th>
+    <th class="navbar" align="right" width="100%">
+      <table border="0" cellpadding="0" cellspacing="0">
+      <tr><th class="navbar" align="center">
+        <p class="nomargin">
+          bioMoby-python
+      </p></th></tr></table>
+    </th>
   </tr>
 </table>
 
 <table border="0" cellpadding="0" cellspacing="0" width="100%">
   <tr>
-    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Aug 10 13:53:30 2004</font></td>
+    <td align="left"><font size="-2">Generated by Epydoc 2.1 on Tue Dec  7 11:28:09 2004</font></td>
     <td align="right"><a href="http://epydoc.sourceforge.net"
                       ><font size="-2">http://epydoc.sf.net</font></a></td>
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