[MOBY-guts] biomoby commit

[Yan Wong]

yanwong
Wed Dec  8 06:26:01 EST 2004
Update of /home/repository/moby/moby-live/Python
In directory pub.open-bio.org:/tmp/cvs-serv28528/Python

Added Files:
	PKG-INFO README changelog setup.py 
Log Message:


moby-live/Python PKG-INFO,1.2,1.3 README,1.2,1.3 changelog,1.2,1.3 setup.py,1.2,1.3
===================================================================
RCS file: /home/repository/moby/moby-live/Python/PKG-INFO,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/PKG-INFO	2004/12/08 11:15:20	1.2
+++ /home/repository/moby/moby-live/Python/PKG-INFO	2004/12/08 11:26:01	1.3
@@ -1,10 +1,10 @@
 Metadata-Version: 1.0
 Name: bioMoby
-Version: 0.5
+Version: 0.7p1
 Summary: Python interface for bioMoby
 Home-page: http://bioserv.rpbs.jussieu.fr
 Author: Yan Wong
 Author-email: yanwong at ebgm.jussieu.fr
 License: 
-Description: Python's version of Moby's API 0.7
+Description: Python's version of Moby's API 0.8
 Platform: UNKNOWN

===================================================================
RCS file: /home/repository/moby/moby-live/Python/README,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/README	2004/12/08 11:15:20	1.2
+++ /home/repository/moby/moby-live/Python/README	2004/12/08 11:26:01	1.3
@@ -6,11 +6,13 @@
 -Python 2.3
 -SOAPpy : http://pywebsvcs.sourceforge.net/
 -xml libraries for python: http://pyxml.sourceforge.net (generally already included in python 2.2+)
+ however if you have some troubles you may need to install PyXML 0.8.3
 -if you plan to build webservices with Python, have a look on ZSI gived in this distribution (ZSI-1.5.0-patched) 
 the ZSI here has been patched due to some trouble with CDATA section node
 __init__.py has been modified in order to solve this problem
 -pyipc: http://www.theory.org/~mac4/software/ for ipc management with Python (the Dispatcher class needs it)
 
+All these libraries has been added in the packages directory.
 
 How to setup bioMoby-python?
 

===================================================================
RCS file: /home/repository/moby/moby-live/Python/changelog,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/changelog	2004/12/08 11:15:20	1.2
+++ /home/repository/moby/moby-live/Python/changelog	2004/12/08 11:26:01	1.3
@@ -31,4 +31,28 @@
   add a __setitem__ method to the MobyContent class
   queries are now accessible via the key directly, use mobycontent['querykey'] to access the data and parameters inside
   a tool in the utils/wx, objectBrowser is a GUI program to browse the bioMoby Ontology
-  
+
+0.6: Bug in the MobyObject corrected
+     Bug in the Dispatcher corrected (troubles with handling multiple queries)
+     added signatureURL and RDF for Registration process (in Service, ServiceList)
+     debug option when executing a service (trace of HTTP calls) in Central and Service Class
+     (allows you to have the dump of all your SOAP transaction with the webservice)
+     if you want to trace a SOAP call while executing a service just put:
+     service.execute(mobyqueries, debug=True) and you'll have the complete trace of the execution
+     when you deal with the Moby Central Server, just add client.server.config.debug=1 in order to trace execution of your queries
+
+0.7: Create a class AbstractDispatcher, SimpleDispatcher in order to create other types of dispatchers
+    On PBSDispatcher, a class qsubParameters designed to store parameters for the qsub command
+    Class Parameter deserialisation (fromMoby)
+    Some cleaning on the code, and even more debugging;)
+    Documentation has been updated
+    Libraries that were used to build this packages has been added into the packages directory
+
+0.7p1: Dispatchers can deserialize MobyContent that were in Body tag people using mod_python will have 
+       to patch their ZSI package again.
+       just do a:
+           cd packages/ZSI-1.5.0-patched
+           python setup.py install 
+           (normally just the dispatch.py was modified)
+           
+       tutorials/webservice and documentations have been updated.

===================================================================
RCS file: /home/repository/moby/moby-live/Python/setup.py,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Python/setup.py	2004/12/08 11:15:20	1.2
+++ /home/repository/moby/moby-live/Python/setup.py	2004/12/08 11:26:01	1.3
@@ -9,4 +9,4 @@
 	author_email="yanwong at ebgm.jussieu.fr",
 	url="http://bioserv.rpbs.jussieu.fr",
 	packages=['bioMoby', 'bioMoby.ontology', 'bioMoby.webservice'],
-	package_dir={'bioMoby':'src', 'bioMoby.ontology':'src/ontology', 'bioMoby.webservice':'src/webservice'})
+	package_dir={'bioMoby':'bioMoby', 'bioMoby.ontology':'bioMoby/ontology', 'bioMoby.webservice':'bioMoby/webservice'})