[MOBY-guts] biomoby commit

[senger@ebi.ac.uk]

senger
Tue Nov 25 08:18:11 EST 2003
Update of /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared
In directory pub.open-bio.org:/tmp/cvs-serv19385/src/main/org/biomoby/shared

Modified Files:
	Central.java Utils.java 
Log Message:
added buglist for graphs; code cleaning

moby-live/Java/src/main/org/biomoby/shared Central.java,1.2,1.3 Utils.java,1.2,1.3
===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/Central.java,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/Central.java	2003/11/24 18:45:25	1.2
+++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/Central.java	2003/11/25 13:18:11	1.3
@@ -89,13 +89,16 @@
     /**************************************************************************
      * Get all ISA relationships of the given 'serviceTypeName'.
      *<p>
-     * @param serviceTypeName is an ontology term specifying whose
+     * @param serviceTypeName is a service type name whose
      * relationships should be looked at
-     * @return an array of ontology terms defining all parents (direct
-     * or indirect) of the given 'serviceTypeName'
+     * @param expand 'true' causes that all related type names are
+     * returned, 'false' means that only first-level neighbour is returned
+     * @return an array of service type names representing all parents
+     * (direct or indirect) of the given 'serviceTypeName'
      * @throws MobyException if communication with the Moby Registry fails
      *************************************************************************/
-    String[] getServiceTypeRelationships (String serviceTypeName)
+    String[] getServiceTypeRelationships (String serviceTypeName,
+					  boolean expand)
 	throws MobyException;
 
     /**************************************************************************

===================================================================
RCS file: /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/Utils.java,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/Utils.java	2003/10/17 13:13:35	1.2
+++ /home/repository/moby/moby-live/Java/src/main/org/biomoby/shared/Utils.java	2003/11/25 13:18:11	1.3
@@ -189,7 +189,7 @@
 
     /*************************************************************************
      * Return just the last part of the LSID identifier. An example of
-     * an LSID identrifier as used by and returned from the Moby
+     * an LSID identifier as used by and returned from the Moby
      * registry is <tt>urn:lsid:biomoby.org:objectclass:object</tt>.
      * <p>
      *