[MOBY-guts] biomoby commit
senger@ebi.ac.uk
senger at pub.open-bio.org
Fri May 9 15:51:11 UTC 2003
senger
Fri May 9 11:51:10 EDT 2003
Update of /home/repository/moby/moby-live/Java/docs/API
In directory pub.open-bio.org:/tmp/cvs-serv9113/docs/API
Modified Files:
MobyCmdLineClient.html allclasses-frame.html
allclasses-noframe.html constant-values.html help-doc.html
index-all.html index.html overview-frame.html
overview-summary.html overview-tree.html package-frame.html
package-list packages.html serialized-form.html
Log Message:
changes reflecting the main API change in BioMoby
moby-live/Java/docs/API MobyCmdLineClient.html,1.1,1.2 allclasses-frame.html,1.2,1.3 allclasses-noframe.html,1.2,1.3 constant-values.html,1.2,1.3 help-doc.html,1.2,1.3 index-all.html,1.2,1.3 index.html,1.2,1.3 overview-frame.html,1.2,1.3 overview-summary.html,1.2,1.3 overview-tree.html,1.2,1.3 package-frame.html,1.2,1.3 package-list,1.2,1.3 packages.html,1.2,1.3 serialized-form.html,1.2,1.3
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/MobyCmdLineClient.html,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/docs/API/MobyCmdLineClient.html 2003/03/02 20:48:24 1.1
+++ /home/repository/moby/moby-live/Java/docs/API/MobyCmdLineClient.html 2003/05/09 15:51:10 1.2
@@ -2,7 +2,7 @@
<!--NewPage-->
<HTML>
<HEAD>
-<!-- Generated by javadoc on Sun Mar 02 18:52:09 GMT 2003 -->
+<!-- Generated by javadoc on Fri May 09 16:41:08 BST 2003 -->
<TITLE>
MobyCmdLineClient (MOBY Registry in Java)
</TITLE>
@@ -36,14 +36,14 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
<TR>
<TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
PREV CLASS
- <A HREF="TestingCentral.html"><B>NEXT CLASS</B></A></FONT></TD>
+ NEXT CLASS</FONT></TD>
<TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
<A HREF="index.html" TARGET="_top"><B>FRAMES</B></A>
<A HREF="MobyCmdLineClient.html" TARGET="_top"><B>NO FRAMES</B></A>
@@ -90,7 +90,7 @@
<p>
The client does not access Moby Central registry directly but
- through the class <A HREF="org/biomoby/client/CentralImpl.html"><CODE>CentralImpl</CODE></A> which
+ through the class <CODE>CentralImpl</CODE> which
helps to hide transport protocol related issues (so, for example,
this client does not know anything about SOAP being used, or about
the XML snippets being returned by the Moby Central).
@@ -105,7 +105,7 @@
with Moby Central registry without bothering with Central's API
details. However, iIf you are interested in finding more details
how to interact directly with Moby Central, have a look at another
- client <A HREF="TestingCentral.html"><CODE>TestingCentral</CODE></A>.
+ client <CODE>TestingCentral</CODE>.
<p>
<P>
@@ -254,14 +254,14 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
<TR>
<TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
PREV CLASS
- <A HREF="TestingCentral.html"><B>NEXT CLASS</B></A></FONT></TD>
+ NEXT CLASS</FONT></TD>
<TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
<A HREF="index.html" TARGET="_top"><B>FRAMES</B></A>
<A HREF="MobyCmdLineClient.html" TARGET="_top"><B>NO FRAMES</B></A>
@@ -288,6 +288,6 @@
<!-- =========== END OF NAVBAR =========== -->
<HR>
-<font size="-1"><a href="mailto:mwilkinson at gene.pbi.nrc.ca,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Mar 2 18:52:04 GMT 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri May 9 16:41:04 BST 2003</font>
</BODY>
</HTML>
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/allclasses-frame.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/docs/API/allclasses-frame.html 2003/03/02 20:48:24 1.2
+++ /home/repository/moby/moby-live/Java/docs/API/allclasses-frame.html 2003/05/09 15:51:10 1.3
@@ -2,7 +2,7 @@
<!--NewPage-->
<HTML>
<HEAD>
-<!-- Generated by javadoc on Sun Mar 02 18:52:09 GMT 2003 -->
+<!-- Generated by javadoc on Fri May 09 16:41:08 BST 2003 -->
<TITLE>
All Classes (MOBY Registry in Java)
</TITLE>
@@ -23,23 +23,29 @@
<TR>
<TD NOWRAP><FONT CLASS="FrameItemFont"><A HREF="org/biomoby/shared/Central.html" TARGET="classFrame"><I>Central</I></A>
<BR>
-<A HREF="org/biomoby/client/CentralImpl.html" TARGET="classFrame">CentralImpl</A>
-<BR>
<A HREF="MobyCmdLineClient.html" TARGET="classFrame">MobyCmdLineClient</A>
<BR>
+<A HREF="org/biomoby/shared/MobyData.html" TARGET="classFrame">MobyData</A>
+<BR>
<A HREF="org/biomoby/shared/MobyDataType.html" TARGET="classFrame">MobyDataType</A>
<BR>
<A HREF="org/biomoby/shared/MobyException.html" TARGET="classFrame">MobyException</A>
<BR>
<A HREF="org/biomoby/shared/MobyNamespace.html" TARGET="classFrame">MobyNamespace</A>
<BR>
+<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html" TARGET="classFrame">MobyPrimaryDataSet</A>
+<BR>
+<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html" TARGET="classFrame">MobyPrimaryDataSimple</A>
+<BR>
+<A HREF="org/biomoby/shared/MobySecondaryData.html" TARGET="classFrame">MobySecondaryData</A>
+<BR>
<A HREF="org/biomoby/shared/MobyService.html" TARGET="classFrame">MobyService</A>
<BR>
<A HREF="org/biomoby/shared/MobyServiceType.html" TARGET="classFrame">MobyServiceType</A>
<BR>
<A HREF="org/biomoby/shared/NoSuccessException.html" TARGET="classFrame">NoSuccessException</A>
<BR>
-<A HREF="TestingCentral.html" TARGET="classFrame">TestingCentral</A>
+<A HREF="org/biomoby/shared/PendingCurationException.html" TARGET="classFrame">PendingCurationException</A>
<BR>
<A HREF="org/biomoby/shared/Utils.html" TARGET="classFrame">Utils</A>
<BR>
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/allclasses-noframe.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/docs/API/allclasses-noframe.html 2003/03/02 20:48:24 1.2
+++ /home/repository/moby/moby-live/Java/docs/API/allclasses-noframe.html 2003/05/09 15:51:10 1.3
@@ -2,7 +2,7 @@
<!--NewPage-->
<HTML>
<HEAD>
-<!-- Generated by javadoc on Sun Mar 02 18:52:09 GMT 2003 -->
+<!-- Generated by javadoc on Fri May 09 16:41:08 BST 2003 -->
<TITLE>
All Classes (MOBY Registry in Java)
</TITLE>
@@ -23,23 +23,29 @@
<TR>
<TD NOWRAP><FONT CLASS="FrameItemFont"><A HREF="org/biomoby/shared/Central.html" TARGET=""><I>Central</I></A>
<BR>
-<A HREF="org/biomoby/client/CentralImpl.html" TARGET="">CentralImpl</A>
-<BR>
<A HREF="MobyCmdLineClient.html" TARGET="">MobyCmdLineClient</A>
<BR>
+<A HREF="org/biomoby/shared/MobyData.html" TARGET="">MobyData</A>
+<BR>
<A HREF="org/biomoby/shared/MobyDataType.html" TARGET="">MobyDataType</A>
<BR>
<A HREF="org/biomoby/shared/MobyException.html" TARGET="">MobyException</A>
<BR>
<A HREF="org/biomoby/shared/MobyNamespace.html" TARGET="">MobyNamespace</A>
<BR>
+<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html" TARGET="">MobyPrimaryDataSet</A>
+<BR>
+<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html" TARGET="">MobyPrimaryDataSimple</A>
+<BR>
+<A HREF="org/biomoby/shared/MobySecondaryData.html" TARGET="">MobySecondaryData</A>
+<BR>
<A HREF="org/biomoby/shared/MobyService.html" TARGET="">MobyService</A>
<BR>
<A HREF="org/biomoby/shared/MobyServiceType.html" TARGET="">MobyServiceType</A>
<BR>
<A HREF="org/biomoby/shared/NoSuccessException.html" TARGET="">NoSuccessException</A>
<BR>
-<A HREF="TestingCentral.html" TARGET="">TestingCentral</A>
+<A HREF="org/biomoby/shared/PendingCurationException.html" TARGET="">PendingCurationException</A>
<BR>
<A HREF="org/biomoby/shared/Utils.html" TARGET="">Utils</A>
<BR>
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/constant-values.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/docs/API/constant-values.html 2003/03/02 20:48:24 1.2
+++ /home/repository/moby/moby-live/Java/docs/API/constant-values.html 2003/05/09 15:51:10 1.3
@@ -2,7 +2,7 @@
<!--NewPage-->
<HTML>
<HEAD>
-<!-- Generated by javadoc on Sun Mar 02 18:52:08 GMT 2003 -->
+<!-- Generated by javadoc on Fri May 09 16:41:07 BST 2003 -->
<TITLE>
Constant Field Values (MOBY Registry in Java)
</TITLE>
@@ -34,7 +34,7 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
@@ -83,30 +83,6 @@
<TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0">
<TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
-<TD COLSPAN=3><B>org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A></B></TD>
-</TR>
-<TR BGCOLOR="white" CLASS="TableRowColor">
-<A NAME="org.biomoby.client.CentralImpl.DEFAULT_ENDPOINT"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
-<CODE>public static final java.lang.String</CODE></FONT></TD>
-<TD ALIGN="left"><CODE><A HREF="org/biomoby/client/CentralImpl.html#DEFAULT_ENDPOINT">DEFAULT_ENDPOINT</A></CODE></TD>
-<TD ALIGN="right"><CODE>"http://mobycentral.cbr.nrc.ca/cgi-bin/MOBY-Central.pl"</CODE></TD>
-</TR>
-<TR BGCOLOR="white" CLASS="TableRowColor">
-<A NAME="org.biomoby.client.CentralImpl.DEFAULT_NAMESPACE"><!-- --></A><TD ALIGN="right"><FONT SIZE="-1">
-<CODE>public static final java.lang.String</CODE></FONT></TD>
-<TD ALIGN="left"><CODE><A HREF="org/biomoby/client/CentralImpl.html#DEFAULT_NAMESPACE">DEFAULT_NAMESPACE</A></CODE></TD>
-<TD ALIGN="right"><CODE>"http://mobycentral.cbr.nrc.ca/MOBY/Central"</CODE></TD>
-</TR>
-</FONT></TD>
-</TR>
-</TABLE>
-
-<P>
-
-<P>
-
-<TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0">
-<TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
<TD COLSPAN=3><B>org.biomoby.shared.<A HREF="org/biomoby/shared/Utils.html">Utils</A></B></TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
@@ -148,7 +124,7 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
@@ -176,6 +152,6 @@
<!-- =========== END OF NAVBAR =========== -->
<HR>
-<font size="-1"><a href="mailto:mwilkinson at gene.pbi.nrc.ca,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Mar 2 18:52:04 GMT 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri May 9 16:41:04 BST 2003</font>
</BODY>
</HTML>
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/help-doc.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/docs/API/help-doc.html 2003/03/02 20:48:24 1.2
+++ /home/repository/moby/moby-live/Java/docs/API/help-doc.html 2003/05/09 15:51:10 1.3
@@ -2,7 +2,7 @@
<!--NewPage-->
<HTML>
<HEAD>
-<!-- Generated by javadoc on Sun Mar 02 18:52:10 GMT 2003 -->
+<!-- Generated by javadoc on Fri May 09 16:41:09 BST 2003 -->
<TITLE>
API Help (MOBY Registry in Java)
</TITLE>
@@ -34,7 +34,7 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
@@ -137,7 +137,7 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
@@ -165,6 +165,6 @@
<!-- =========== END OF NAVBAR =========== -->
<HR>
-<font size="-1"><a href="mailto:mwilkinson at gene.pbi.nrc.ca,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Mar 2 18:52:04 GMT 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri May 9 16:41:04 BST 2003</font>
</BODY>
</HTML>
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/index-all.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/docs/API/index-all.html 2003/03/02 20:48:24 1.2
+++ /home/repository/moby/moby-live/Java/docs/API/index-all.html 2003/05/09 15:51:10 1.3
@@ -2,7 +2,7 @@
<!--NewPage-->
<HTML>
<HEAD>
-<!-- Generated by javadoc on Sun Mar 02 18:52:08 GMT 2003 -->
+<!-- Generated by javadoc on Fri May 09 16:41:07 BST 2003 -->
<TITLE>
Index (MOBY Registry in Java)
</TITLE>
@@ -34,7 +34,7 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
@@ -61,14 +61,27 @@
</TABLE>
<!-- =========== END OF NAVBAR =========== -->
-<A HREF="#_A_">A</A> <A HREF="#_C_">C</A> <A HREF="#_D_">D</A> <A HREF="#_E_">E</A> <A HREF="#_F_">F</A> <A HREF="#_G_">G</A> <A HREF="#_M_">M</A> <A HREF="#_N_">N</A> <A HREF="#_O_">O</A> <A HREF="#_P_">P</A> <A HREF="#_R_">R</A> <A HREF="#_S_">S</A> <A HREF="#_T_">T</A> <A HREF="#_U_">U</A> <HR>
+<A HREF="#_A_">A</A> <A HREF="#_C_">C</A> <A HREF="#_D_">D</A> <A HREF="#_E_">E</A> <A HREF="#_F_">F</A> <A HREF="#_G_">G</A> <A HREF="#_I_">I</A> <A HREF="#_M_">M</A> <A HREF="#_N_">N</A> <A HREF="#_O_">O</A> <A HREF="#_P_">P</A> <A HREF="#_R_">R</A> <A HREF="#_S_">S</A> <A HREF="#_T_">T</A> <A HREF="#_U_">U</A> <HR>
<A NAME="_A_"><!-- --></A><H2>
<B>A</B></H2>
<DL>
-<DT><A HREF="org/biomoby/shared/MobyService.html#addInput(java.lang.String, java.lang.String)"><B>addInput(String, String)</B></A> -
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#addAllowedValue(java.lang.String)"><B>addAllowedValue(String)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyDataType.html#addChild(java.lang.String, java.lang.String)"><B>addChild(String, String)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
+<DD>'name' is a name given to this child (attribute)
+ 'typeName' is a name of a type represented byte this child
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSet.html#addElement(org.biomoby.shared.MobyPrimaryDataSimple)"><B>addElement(MobyPrimaryDataSimple)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html">MobyPrimaryDataSet</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#addInput(org.biomoby.shared.MobyData)"><B>addInput(MobyData)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
<DD>
-<DT><A HREF="org/biomoby/shared/MobyService.html#addOutputType(java.lang.String)"><B>addOutputType(String)</B></A> -
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html#addNamespace(org.biomoby.shared.MobyNamespace)"><B>addNamespace(MobyNamespace)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html">MobyPrimaryDataSimple</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#addOutput(org.biomoby.shared.MobyData)"><B>addOutput(MobyData)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
<DD>
<DT><A HREF="org/biomoby/shared/MobyServiceType.html#addParentName(java.lang.String)"><B>addParentName(String)</B></A> -
@@ -86,32 +99,11 @@
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Call Moby registry's method with given XML as input and return whatever
you get back.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#call(java.lang.String, java.lang.String)"><B>call(String, String)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
-<DT><A HREF="org/biomoby/shared/Central.html"><B>Central</B></A> - interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>.<DD>An interface to the Moby Registry.<DT><A HREF="org/biomoby/client/CentralImpl.html"><B>CentralImpl</B></A> - class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>.<DD>A default implementation of the
- interface <A HREF="org/biomoby/shared/Central.html"><CODE>Central</CODE></A>
- allowing access to a Moby registry.<DT><A HREF="org/biomoby/client/CentralImpl.html#CentralImpl()"><B>CentralImpl()</B></A> -
-Constructor for class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>Default constructor.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#CentralImpl(java.lang.String)"><B>CentralImpl(String)</B></A> -
-Constructor for class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>Constructor allowing to specify which Moby Registry to use.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#CentralImpl(java.lang.String, java.lang.String)"><B>CentralImpl(String, String)</B></A> -
-Constructor for class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>Constructor allowing to specify which Moby Registry and what
- namespace to use.
-</DL>
+<DT><A HREF="org/biomoby/shared/Central.html"><B>Central</B></A> - interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>.<DD>An interface to the Moby Registry.</DL>
<HR>
<A NAME="_D_"><!-- --></A><H2>
<B>D</B></H2>
<DL>
-<DT><A HREF="org/biomoby/client/CentralImpl.html#DEFAULT_ENDPOINT"><B>DEFAULT_ENDPOINT</B></A> -
-Static variable in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>Default location (endpoint) of a Moby registry.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#DEFAULT_NAMESPACE"><B>DEFAULT_NAMESPACE</B></A> -
-Static variable in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>Default namespace used by the contacted Moby registry.
<DT><A HREF="org/biomoby/shared/Utils.html#DEFAULT_PARSER_WRAPPER"><B>DEFAULT_PARSER_WRAPPER</B></A> -
Static variable in class org.biomoby.shared.<A HREF="org/biomoby/shared/Utils.html">Utils</A>
<DD>Default parser wrapper.
@@ -130,21 +122,40 @@
<DL>
<DT><A HREF="org/biomoby/shared/Central.html#findService(org.biomoby.shared.MobyService)"><B>findService(MobyService)</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
-<DD>Find services by their input and/or output data types.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#findService(org.biomoby.shared.MobyService)"><B>findService(MobyService)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
+<DD>Find services matching whatever is non-empty in the given 'pattern'.
+<DT><A HREF="org/biomoby/shared/Central.html#findService(org.biomoby.shared.MobyService, java.lang.String[])"><B>findService(MobyService, String[])</B></A> -
+Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
+<DD>Find service matching both all non-empty fields in the 'pattern' and
+ the 'keywords'.
<DT><A HREF="org/biomoby/shared/Central.html#findService(java.lang.String)"><B>findService(String)</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Find services of the given type and its sub-types.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#findService(java.lang.String)"><B>findService(String)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
<DT><A HREF="org/biomoby/shared/Central.html#findService(java.lang.String[])"><B>findService(String[])</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Find services by given keywords.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#findService(java.lang.String[])"><B>findService(String[])</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#format(int)"><B>format(int)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html#format(int)"><B>format(int)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html">MobyPrimaryDataSimple</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSet.html#format(int)"><B>format(int)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html">MobyPrimaryDataSet</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyServiceType.html#format(int)"><B>format(int)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html">MobyServiceType</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyNamespace.html#format(int)"><B>format(int)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html">MobyNamespace</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyDataType.html#format(int)"><B>format(int)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyData.html#format(int)"><B>format(int)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyData.html">MobyData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/Utils.html#format(java.lang.Object, int)"><B>format(Object, int)</B></A> -
+Static method in class org.biomoby.shared.<A HREF="org/biomoby/shared/Utils.html">Utils</A>
<DD>
<DT><A HREF="org/biomoby/shared/Utils.html#formatFault(org.apache.axis.AxisFault)"><B>formatFault(AxisFault)</B></A> -
Static method in class org.biomoby.shared.<A HREF="org/biomoby/shared/Utils.html">Utils</A>
@@ -159,42 +170,52 @@
<A NAME="_G_"><!-- --></A><H2>
<B>G</B></H2>
<DL>
-<DT><A HREF="org/biomoby/shared/MobyService.html#getAuthority()"><B>getAuthority()</B></A> -
-Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#getAllowedValues()"><B>getAllowedValues()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyServiceType.html#getAuthority()"><B>getAuthority()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html">MobyServiceType</A>
<DD>
<DT><A HREF="org/biomoby/shared/MobyNamespace.html#getAuthority()"><B>getAuthority()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html">MobyNamespace</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#getAuthority()"><B>getAuthority()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DD>
<DT><A HREF="org/biomoby/shared/MobyDataType.html#getAuthority()"><B>getAuthority()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
<DD>
<DT><A HREF="org/biomoby/shared/MobyService.html#getCategory()"><B>getCategory()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyDataType.html#getChildren()"><B>getChildren()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
+<DD>Describes what children this data type has (expressing ontology
+ term HAS-A).
<DT><A HREF="org/biomoby/shared/NoSuccessException.html#getCulprit()"><B>getCulprit()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/NoSuccessException.html">NoSuccessException</A>
<DD>Retrieve the culprit.
-<DT><A HREF="org/biomoby/shared/Central.html#getDataType(java.lang.String)"><B>getDataType(String)</B></A> -
-Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
-<DD>Get XML Schema definition of the given data type.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#getDataType(java.lang.String)"><B>getDataType(String)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#getDataType()"><B>getDataType()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html#getDataType()"><B>getDataType()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html">MobyPrimaryDataSimple</A>
<DD>
<DT><A HREF="org/biomoby/shared/Central.html#getDataTypeNames()"><B>getDataTypeNames()</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Get the list of all registered data types.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#getDataTypeNames()"><B>getDataTypeNames()</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#getDefaultValue()"><B>getDefaultValue()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
<DD>
<DT><A HREF="org/biomoby/shared/MobyServiceType.html#getDescription()"><B>getDescription()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html">MobyServiceType</A>
<DD>
-<DT><A HREF="org/biomoby/shared/MobyService.html#getDescription()"><B>getDescription()</B></A> -
-Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
-<DD>
<DT><A HREF="org/biomoby/shared/MobyNamespace.html#getDescription()"><B>getDescription()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html">MobyNamespace</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#getDescription()"><B>getDescription()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DD>
<DT><A HREF="org/biomoby/shared/MobyDataType.html#getDescription()"><B>getDescription()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
<DD>
@@ -204,85 +225,97 @@
<DT><A HREF="org/biomoby/shared/Utils.html#getDOMParser(java.lang.String)"><B>getDOMParser(String)</B></A> -
Static method in class org.biomoby.shared.<A HREF="org/biomoby/shared/Utils.html">Utils</A>
<DD>Find and return an instance of a DOM parser wrapper.
-<DT><A HREF="org/biomoby/shared/MobyServiceType.html#getId()"><B>getId()</B></A> -
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSet.html#getElements()"><B>getElements()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html">MobyPrimaryDataSet</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyServiceType.html#getEmailContact()"><B>getEmailContact()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html">MobyServiceType</A>
<DD>
-<DT><A HREF="org/biomoby/shared/MobyService.html#getId()"><B>getId()</B></A> -
+<DT><A HREF="org/biomoby/shared/MobyNamespace.html#getEmailContact()"><B>getEmailContact()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html">MobyNamespace</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#getEmailContact()"><B>getEmailContact()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyDataType.html#getEmailContact()"><B>getEmailContact()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyServiceType.html#getId()"><B>getId()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html">MobyServiceType</A>
+<DD>
<DT><A HREF="org/biomoby/shared/MobyNamespace.html#getId()"><B>getId()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html">MobyNamespace</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#getId()"><B>getId()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DD>
<DT><A HREF="org/biomoby/shared/MobyDataType.html#getId()"><B>getId()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
<DD>
-<DT><A HREF="org/biomoby/shared/MobyService.html#getInputNamespaces()"><B>getInputNamespaces()</B></A> -
-Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DT><A HREF="org/biomoby/shared/MobyData.html#getId()"><B>getId()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyData.html">MobyData</A>
<DD>
-<DT><A HREF="org/biomoby/shared/MobyService.html#getInputTypes()"><B>getInputTypes()</B></A> -
-Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#getMaximumValue()"><B>getMaximumValue()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#getMinimumValue()"><B>getMinimumValue()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
<DD>
<DT><A HREF="org/biomoby/shared/MobyServiceType.html#getName()"><B>getName()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html">MobyServiceType</A>
<DD>
-<DT><A HREF="org/biomoby/shared/MobyService.html#getName()"><B>getName()</B></A> -
-Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
-<DD>
<DT><A HREF="org/biomoby/shared/MobyNamespace.html#getName()"><B>getName()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html">MobyNamespace</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#getName()"><B>getName()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DD>
<DT><A HREF="org/biomoby/shared/MobyDataType.html#getName()"><B>getName()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyData.html#getName()"><B>getName()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyData.html">MobyData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html#getNamespaces()"><B>getNamespaces()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html">MobyPrimaryDataSimple</A>
+<DD>
<DT><A HREF="org/biomoby/shared/Central.html#getNamespaces()"><B>getNamespaces()</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Get the list of all registered namespaces.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#getNamespaces()"><B>getNamespaces()</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
<DT><A HREF="org/biomoby/shared/MobyException.html#getOriginalException()"><B>getOriginalException()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyException.html">MobyException</A>
<DD>Retrieve the original exception.
-<DT><A HREF="org/biomoby/shared/MobyService.html#getOutputTypes()"><B>getOutputTypes()</B></A> -
-Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
-<DD>
<DT><A HREF="org/biomoby/shared/MobyServiceType.html#getParentNames()"><B>getParentNames()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html">MobyServiceType</A>
<DD>
<DT><A HREF="org/biomoby/shared/MobyDataType.html#getParentNames()"><B>getParentNames()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#getPrimaryInputs()"><B>getPrimaryInputs()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#getPrimaryOutputs()"><B>getPrimaryOutputs()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DD>
<DT><A HREF="org/biomoby/shared/Central.html#getProviders()"><B>getProviders()</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Get the list of all providers (each provider is represented by an
authority's URI.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#getProviders()"><B>getProviders()</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
+<DT><A HREF="org/biomoby/shared/MobyService.html#getSecondaryInputs()"><B>getSecondaryInputs()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
<DD>
<DT><A HREF="org/biomoby/shared/Central.html#getServiceNames()"><B>getServiceNames()</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Get a (redundant) list of all registered service names.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#getServiceNames()"><B>getServiceNames()</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
<DT><A HREF="org/biomoby/shared/Central.html#getServiceTypes()"><B>getServiceTypes()</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Get the list of all registered service types.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#getServiceTypes()"><B>getServiceTypes()</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
<DT><A HREF="org/biomoby/shared/Central.html#getServiceWSDL(java.lang.String)"><B>getServiceWSDL(String)</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Get WSDL defining a service given by its name.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#getServiceWSDL(java.lang.String)"><B>getServiceWSDL(String)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
<DT><A HREF="org/biomoby/shared/Central.html#getServiceWSDL(java.lang.String, java.lang.String)"><B>getServiceWSDL(String, String)</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Get WSDL defining a service given by its name and its authority.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#getServiceWSDL(java.lang.String, java.lang.String)"><B>getServiceWSDL(String, String)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
<DT><A HREF="org/biomoby/shared/MobyService.html#getType()"><B>getType()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
<DD>
@@ -292,17 +325,31 @@
<DT><A HREF="MobyCmdLineClient.html#getUsage()"><B>getUsage()</B></A> -
Static method in class <A HREF="MobyCmdLineClient.html">MobyCmdLineClient</A>
<DD>Return a help text how to use this client.
-<DT><A HREF="org/biomoby/shared/MobyDataType.html#getXSD()"><B>getXSD()</B></A> -
-Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
+</DL>
+<HR>
+<A NAME="_I_"><!-- --></A><H2>
+<B>I</B></H2>
+<DL>
+<DT><A HREF="org/biomoby/shared/MobyService.html#isAuthoritative()"><B>isAuthoritative()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#isPrimary()"><B>isPrimary()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html#isPrimary()"><B>isPrimary()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html">MobyPrimaryDataSimple</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSet.html#isPrimary()"><B>isPrimary()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html">MobyPrimaryDataSet</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyData.html#isPrimary()"><B>isPrimary()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyData.html">MobyData</A>
<DD>
</DL>
<HR>
<A NAME="_M_"><!-- --></A><H2>
<B>M</B></H2>
<DL>
-<DT><A HREF="TestingCentral.html#main(java.lang.String[])"><B>main(String[])</B></A> -
-Static method in class <A HREF="TestingCentral.html">TestingCentral</A>
-<DD>Entry point...
<DT><A HREF="MobyCmdLineClient.html#main(java.lang.String[])"><B>main(String[])</B></A> -
Static method in class <A HREF="MobyCmdLineClient.html">MobyCmdLineClient</A>
<DD>Entry point...
@@ -312,6 +359,10 @@
removing services etc.<DT><A HREF="MobyCmdLineClient.html#MobyCmdLineClient()"><B>MobyCmdLineClient()</B></A> -
Constructor for class <A HREF="MobyCmdLineClient.html">MobyCmdLineClient</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyData.html"><B>MobyData</B></A> - class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyData.html">MobyData</A>.<DD>A container keeping input or output data types together with few
+ other attributes.<DT><A HREF="org/biomoby/shared/MobyData.html#MobyData(java.lang.String)"><B>MobyData(String)</B></A> -
+Constructor for class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyData.html">MobyData</A>
+<DD>Default constructor.
<DT><A HREF="org/biomoby/shared/MobyDataType.html"><B>MobyDataType</B></A> - class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>.<DD>A container representing a data type used in the Moby registry.<DT><A HREF="org/biomoby/shared/MobyDataType.html#MobyDataType(java.lang.String)"><B>MobyDataType(String)</B></A> -
Constructor for class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
<DD>Default constructor.
@@ -328,6 +379,27 @@
<DT><A HREF="org/biomoby/shared/MobyNamespace.html"><B>MobyNamespace</B></A> - class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html">MobyNamespace</A>.<DD>A container representing a namespace used in the Moby registry.<DT><A HREF="org/biomoby/shared/MobyNamespace.html#MobyNamespace(java.lang.String)"><B>MobyNamespace(String)</B></A> -
Constructor for class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html">MobyNamespace</A>
<DD>Default constructor.
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSet.html"><B>MobyPrimaryDataSet</B></A> - class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html">MobyPrimaryDataSet</A>.<DD>A container representing a way how a named collection of various
+ primary data types is used in a service.<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSet.html#MobyPrimaryDataSet(org.w3c.dom.Element)"><B>MobyPrimaryDataSet(Element)</B></A> -
+Constructor for class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html">MobyPrimaryDataSet</A>
+<DD>Construct this instance from a piece of XML.
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSet.html#MobyPrimaryDataSet(java.lang.String)"><B>MobyPrimaryDataSet(String)</B></A> -
+Constructor for class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html">MobyPrimaryDataSet</A>
+<DD>Default constructor.
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html"><B>MobyPrimaryDataSimple</B></A> - class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html">MobyPrimaryDataSimple</A>.<DD>A container representing a way how various primary data types
+ are used in a service.<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html#MobyPrimaryDataSimple(org.w3c.dom.Element)"><B>MobyPrimaryDataSimple(Element)</B></A> -
+Constructor for class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html">MobyPrimaryDataSimple</A>
+<DD>Construct this instance from a piece of XML.
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html#MobyPrimaryDataSimple(java.lang.String)"><B>MobyPrimaryDataSimple(String)</B></A> -
+Constructor for class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html">MobyPrimaryDataSimple</A>
+<DD>Default constructor.
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html"><B>MobySecondaryData</B></A> - class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>.<DD>A container representing a way how various secondary data types
+ are used in a service.<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#MobySecondaryData(org.w3c.dom.Element)"><B>MobySecondaryData(Element)</B></A> -
+Constructor for class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>Construct this instance from a piece of XML.
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#MobySecondaryData(java.lang.String)"><B>MobySecondaryData(String)</B></A> -
+Constructor for class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>Default constructor.
<DT><A HREF="org/biomoby/shared/MobyService.html"><B>MobyService</B></A> - class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>.<DD>A container representing a service.<DT><A HREF="org/biomoby/shared/MobyService.html#MobyService(java.lang.String)"><B>MobyService(String)</B></A> -
Constructor for class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
<DD>Default constructor.
@@ -353,12 +425,17 @@
<A NAME="_O_"><!-- --></A><H2>
<B>O</B></H2>
<DL>
-<DT><A HREF="org/biomoby/client/package-summary.html"><B>org.biomoby.client</B></A> - package org.biomoby.client<DD>The components used for developing Moby clients.<DT><A HREF="org/biomoby/shared/package-summary.html"><B>org.biomoby.shared</B></A> - package org.biomoby.shared<DD>The components used by packages and classes developed for both
+<DT><A HREF="org/biomoby/shared/package-summary.html"><B>org.biomoby.shared</B></A> - package org.biomoby.shared<DD>The components used by packages and classes developed for both
Moby clients and (in the future) Moby servers.</DL>
<HR>
<A NAME="_P_"><!-- --></A><H2>
<B>P</B></H2>
<DL>
+<DT><A HREF="org/biomoby/shared/PendingCurationException.html"><B>PendingCurationException</B></A> - exception org.biomoby.shared.<A HREF="org/biomoby/shared/PendingCurationException.html">PendingCurationException</A>.<DD>A specific exception indicating that a request should not be
+ fulfilled because registration or deregistration of an entity
+ was not yet successful - but may be later.<DT><A HREF="org/biomoby/shared/PendingCurationException.html#PendingCurationException()"><B>PendingCurationException()</B></A> -
+Constructor for class org.biomoby.shared.<A HREF="org/biomoby/shared/PendingCurationException.html">PendingCurationException</A>
+<DD>
<DT><A HREF="org/biomoby/shared/Utils.html#PROP_PARSER_WRAPPER"><B>PROP_PARSER_WRAPPER</B></A> -
Static variable in class org.biomoby.shared.<A HREF="org/biomoby/shared/Utils.html">Utils</A>
<DD>Java property name ('dom.parser').
@@ -370,72 +447,112 @@
<DT><A HREF="org/biomoby/shared/Central.html#registerDataType(org.biomoby.shared.MobyDataType)"><B>registerDataType(MobyDataType)</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Register new data type.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#registerDataType(org.biomoby.shared.MobyDataType)"><B>registerDataType(MobyDataType)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
<DT><A HREF="org/biomoby/shared/Central.html#registerNamespace(org.biomoby.shared.MobyNamespace)"><B>registerNamespace(MobyNamespace)</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Register new namespace.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#registerNamespace(org.biomoby.shared.MobyNamespace)"><B>registerNamespace(MobyNamespace)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
<DT><A HREF="org/biomoby/shared/Central.html#registerService(org.biomoby.shared.MobyService)"><B>registerService(MobyService)</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Register a new service.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#registerService(org.biomoby.shared.MobyService)"><B>registerService(MobyService)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
<DT><A HREF="org/biomoby/shared/Central.html#registerServiceType(org.biomoby.shared.MobyServiceType)"><B>registerServiceType(MobyServiceType)</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Register new service type.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#registerServiceType(org.biomoby.shared.MobyServiceType)"><B>registerServiceType(MobyServiceType)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
</DL>
<HR>
<A NAME="_S_"><!-- --></A><H2>
<B>S</B></H2>
<DL>
-<DT><A HREF="org/biomoby/shared/MobyService.html#setAuthority(java.lang.String)"><B>setAuthority(String)</B></A> -
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#setAllowedValues(java.lang.String[])"><B>setAllowedValues(String[])</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#setAuthoritative(boolean)"><B>setAuthoritative(boolean)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyServiceType.html#setAuthority(java.lang.String)"><B>setAuthority(String)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html">MobyServiceType</A>
+<DD>
<DT><A HREF="org/biomoby/shared/MobyNamespace.html#setAuthority(java.lang.String)"><B>setAuthority(String)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html">MobyNamespace</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#setAuthority(java.lang.String)"><B>setAuthority(String)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DD>
<DT><A HREF="org/biomoby/shared/MobyDataType.html#setAuthority(java.lang.String)"><B>setAuthority(String)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
<DD>
<DT><A HREF="org/biomoby/shared/MobyService.html#setCategory(java.lang.String)"><B>setCategory(String)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyDataType.html#setChildren(java.util.Hashtable)"><B>setChildren(Hashtable)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html#setDataType(org.biomoby.shared.MobyDataType)"><B>setDataType(MobyDataType)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html">MobyPrimaryDataSimple</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#setDataType(java.lang.String)"><B>setDataType(String)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/Central.html#setDebug(boolean)"><B>setDebug(boolean)</B></A> -
+Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
+<DD>Ask the implementation to create more verbose logs or messages about
+ what is going on.
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#setDefaultValue(java.lang.String)"><B>setDefaultValue(String)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>
<DT><A HREF="org/biomoby/shared/MobyServiceType.html#setDescription(java.lang.String)"><B>setDescription(String)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html">MobyServiceType</A>
<DD>
-<DT><A HREF="org/biomoby/shared/MobyService.html#setDescription(java.lang.String)"><B>setDescription(String)</B></A> -
-Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
-<DD>
<DT><A HREF="org/biomoby/shared/MobyNamespace.html#setDescription(java.lang.String)"><B>setDescription(String)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html">MobyNamespace</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#setDescription(java.lang.String)"><B>setDescription(String)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DD>
<DT><A HREF="org/biomoby/shared/MobyDataType.html#setDescription(java.lang.String)"><B>setDescription(String)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
<DD>
-<DT><A HREF="org/biomoby/shared/MobyServiceType.html#setId(java.lang.String)"><B>setId(String)</B></A> -
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSet.html#setElements(org.biomoby.shared.MobyPrimaryDataSimple[])"><B>setElements(MobyPrimaryDataSimple[])</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html">MobyPrimaryDataSet</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyServiceType.html#setEmailContact(java.lang.String)"><B>setEmailContact(String)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html">MobyServiceType</A>
<DD>
-<DT><A HREF="org/biomoby/shared/MobyService.html#setId(java.lang.String)"><B>setId(String)</B></A> -
+<DT><A HREF="org/biomoby/shared/MobyNamespace.html#setEmailContact(java.lang.String)"><B>setEmailContact(String)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html">MobyNamespace</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#setEmailContact(java.lang.String)"><B>setEmailContact(String)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyDataType.html#setEmailContact(java.lang.String)"><B>setEmailContact(String)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyServiceType.html#setId(java.lang.String)"><B>setId(String)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html">MobyServiceType</A>
+<DD>
<DT><A HREF="org/biomoby/shared/MobyNamespace.html#setId(java.lang.String)"><B>setId(String)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html">MobyNamespace</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#setId(java.lang.String)"><B>setId(String)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DD>
<DT><A HREF="org/biomoby/shared/MobyDataType.html#setId(java.lang.String)"><B>setId(String)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
<DD>
-<DT><A HREF="org/biomoby/shared/MobyService.html#setInputs(java.lang.String[], java.lang.String[])"><B>setInputs(String[], String[])</B></A> -
+<DT><A HREF="org/biomoby/shared/MobyData.html#setId(java.lang.String)"><B>setId(String)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyData.html">MobyData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#setInputs(org.biomoby.shared.MobyData[])"><B>setInputs(MobyData[])</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
<DD>
-<DT><A HREF="org/biomoby/shared/MobyService.html#setOutputTypes(java.lang.String[])"><B>setOutputTypes(String[])</B></A> -
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#setMaximumValue(int)"><B>setMaximumValue(int)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#setMinimumValue(int)"><B>setMinimumValue(int)</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html#setNamespaces(org.biomoby.shared.MobyNamespace[])"><B>setNamespaces(MobyNamespace[])</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html">MobyPrimaryDataSimple</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#setOutputs(org.biomoby.shared.MobyData[])"><B>setOutputs(MobyData[])</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
<DD>
<DT><A HREF="org/biomoby/shared/MobyServiceType.html#setParentNames(java.lang.String[])"><B>setParentNames(String[])</B></A> -
@@ -450,29 +567,44 @@
<DT><A HREF="org/biomoby/shared/MobyService.html#setURL(java.lang.String)"><B>setURL(String)</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
<DD>
-<DT><A HREF="org/biomoby/shared/MobyDataType.html#setXSD(java.lang.String)"><B>setXSD(String)</B></A> -
-Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
-<DD>
</DL>
<HR>
<A NAME="_T_"><!-- --></A><H2>
<B>T</B></H2>
<DL>
-<DT><A HREF="TestingCentral.html"><B>TestingCentral</B></A> - class <A HREF="TestingCentral.html">TestingCentral</A>.<DD>An example how to call Moby registry directly.<DT><A HREF="TestingCentral.html#TestingCentral(java.lang.String, java.lang.String)"><B>TestingCentral(String, String)</B></A> -
-Constructor for class <A HREF="TestingCentral.html">TestingCentral</A>
-<DD>Constructor
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#toString()"><B>toString()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html#toString()"><B>toString()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html">MobyPrimaryDataSimple</A>
+<DD>
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSet.html#toString()"><B>toString()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html">MobyPrimaryDataSet</A>
+<DD>
<DT><A HREF="org/biomoby/shared/MobyServiceType.html#toString()"><B>toString()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html">MobyServiceType</A>
<DD>
-<DT><A HREF="org/biomoby/shared/MobyService.html#toString()"><B>toString()</B></A> -
-Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
-<DD>
<DT><A HREF="org/biomoby/shared/MobyNamespace.html#toString()"><B>toString()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html">MobyNamespace</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobyService.html#toString()"><B>toString()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html">MobyService</A>
+<DD>
<DT><A HREF="org/biomoby/shared/MobyDataType.html#toString()"><B>toString()</B></A> -
Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
<DD>
+<DT><A HREF="org/biomoby/shared/MobySecondaryData.html#toXML()"><B>toXML()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html">MobySecondaryData</A>
+<DD>Convbert this instance into XML.
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html#toXML()"><B>toXML()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html">MobyPrimaryDataSimple</A>
+<DD>Convert this instance into XML.
+<DT><A HREF="org/biomoby/shared/MobyPrimaryDataSet.html#toXML()"><B>toXML()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html">MobyPrimaryDataSet</A>
+<DD>Convert this instance to the XML.
+<DT><A HREF="org/biomoby/shared/MobyData.html#toXML()"><B>toXML()</B></A> -
+Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyData.html">MobyData</A>
+<DD>Must be overwritten byte a subclass.
</DL>
<HR>
<A NAME="_U_"><!-- --></A><H2>
@@ -481,34 +613,22 @@
<DT><A HREF="org/biomoby/shared/Central.html#unregisterDataType(org.biomoby.shared.MobyDataType)"><B>unregisterDataType(MobyDataType)</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Unregister given Moby data type.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#unregisterDataType(org.biomoby.shared.MobyDataType)"><B>unregisterDataType(MobyDataType)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
<DT><A HREF="org/biomoby/shared/Central.html#unregisterNamespace(org.biomoby.shared.MobyNamespace)"><B>unregisterNamespace(MobyNamespace)</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Unregister given Moby namespace.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#unregisterNamespace(org.biomoby.shared.MobyNamespace)"><B>unregisterNamespace(MobyNamespace)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
<DT><A HREF="org/biomoby/shared/Central.html#unregisterService(org.biomoby.shared.MobyService)"><B>unregisterService(MobyService)</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Unregister given Moby service.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#unregisterService(org.biomoby.shared.MobyService)"><B>unregisterService(MobyService)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
<DT><A HREF="org/biomoby/shared/Central.html#unregisterServiceType(org.biomoby.shared.MobyServiceType)"><B>unregisterServiceType(MobyServiceType)</B></A> -
Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
<DD>Unregister given Moby service type.
-<DT><A HREF="org/biomoby/client/CentralImpl.html#unregisterServiceType(org.biomoby.shared.MobyServiceType)"><B>unregisterServiceType(MobyServiceType)</B></A> -
-Method in class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html">CentralImpl</A>
-<DD>
<DT><A HREF="org/biomoby/shared/Utils.html"><B>Utils</B></A> - class org.biomoby.shared.<A HREF="org/biomoby/shared/Utils.html">Utils</A>.<DD>This is a set of several utility methods which may be useful for
writing both registry and client code.<DT><A HREF="org/biomoby/shared/Utils.html#Utils()"><B>Utils()</B></A> -
Constructor for class org.biomoby.shared.<A HREF="org/biomoby/shared/Utils.html">Utils</A>
<DD>
</DL>
<HR>
-<A HREF="#_A_">A</A> <A HREF="#_C_">C</A> <A HREF="#_D_">D</A> <A HREF="#_E_">E</A> <A HREF="#_F_">F</A> <A HREF="#_G_">G</A> <A HREF="#_M_">M</A> <A HREF="#_N_">N</A> <A HREF="#_O_">O</A> <A HREF="#_P_">P</A> <A HREF="#_R_">R</A> <A HREF="#_S_">S</A> <A HREF="#_T_">T</A> <A HREF="#_U_">U</A>
+<A HREF="#_A_">A</A> <A HREF="#_C_">C</A> <A HREF="#_D_">D</A> <A HREF="#_E_">E</A> <A HREF="#_F_">F</A> <A HREF="#_G_">G</A> <A HREF="#_I_">I</A> <A HREF="#_M_">M</A> <A HREF="#_N_">N</A> <A HREF="#_O_">O</A> <A HREF="#_P_">P</A> <A HREF="#_R_">R</A> <A HREF="#_S_">S</A> <A HREF="#_T_">T</A> <A HREF="#_U_">U</A>
<!-- ========== START OF NAVBAR ========== -->
<A NAME="navbar_bottom"><!-- --></A>
<TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0">
@@ -527,7 +647,7 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
@@ -555,6 +675,6 @@
<!-- =========== END OF NAVBAR =========== -->
<HR>
-<font size="-1"><a href="mailto:mwilkinson at gene.pbi.nrc.ca,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Mar 2 18:52:04 GMT 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri May 9 16:41:04 BST 2003</font>
</BODY>
</HTML>
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/index.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/docs/API/index.html 2003/03/02 20:48:24 1.2
+++ /home/repository/moby/moby-live/Java/docs/API/index.html 2003/05/09 15:51:10 1.3
@@ -2,7 +2,7 @@
<!--NewPage-->
<HTML>
<HEAD>
-<!-- Generated by javadoc on Sun Mar 02 18:52:09 GMT 2003-->
+<!-- Generated by javadoc on Fri May 09 16:41:08 BST 2003-->
<TITLE>
MOBY Registry in Java
</TITLE>
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/overview-frame.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/docs/API/overview-frame.html 2003/03/02 20:48:24 1.2
+++ /home/repository/moby/moby-live/Java/docs/API/overview-frame.html 2003/05/09 15:51:10 1.3
@@ -2,7 +2,7 @@
<!--NewPage-->
<HTML>
<HEAD>
-<!-- Generated by javadoc on Sun Mar 02 18:52:09 GMT 2003 -->
+<!-- Generated by javadoc on Fri May 09 16:41:08 BST 2003 -->
<TITLE>
Overview (MOBY Registry in Java)
</TITLE>
@@ -20,7 +20,7 @@
<TABLE BORDER="0" WIDTH="100%">
<TR>
<TD NOWRAP><FONT size="+1" CLASS="FrameTitleFont">
-<B><font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></B></FONT></TD>
+<B><font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></B></FONT></TD>
</TR>
</TABLE>
@@ -33,8 +33,6 @@
<BR>
<FONT CLASS="FrameItemFont"><A HREF="package-frame.html" TARGET="packageFrame"><unnamed package></A></FONT>
<BR>
-<FONT CLASS="FrameItemFont"><A HREF="org/biomoby/client/package-frame.html" TARGET="packageFrame">org.biomoby.client</A></FONT>
-<BR>
<FONT CLASS="FrameItemFont"><A HREF="org/biomoby/shared/package-frame.html" TARGET="packageFrame">org.biomoby.shared</A></FONT>
<BR>
</TD>
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/overview-summary.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/docs/API/overview-summary.html 2003/03/02 20:48:24 1.2
+++ /home/repository/moby/moby-live/Java/docs/API/overview-summary.html 2003/05/09 15:51:10 1.3
@@ -2,7 +2,7 @@
<!--NewPage-->
<HTML>
<HEAD>
-<!-- Generated by javadoc on Sun Mar 02 18:52:09 GMT 2003 -->
+<!-- Generated by javadoc on Fri May 09 16:41:08 BST 2003 -->
<TITLE>
Overview (MOBY Registry in Java)
</TITLE>
@@ -35,7 +35,7 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
@@ -78,19 +78,6 @@
<TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0" WIDTH="100%">
<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
<TD COLSPAN=2><FONT SIZE="+2">
-<B>Moby Registry Client Support</B></FONT></TD>
-</TR>
-<TR BGCOLOR="white" CLASS="TableRowColor">
-<TD WIDTH="20%"><B><A HREF="org/biomoby/client/package-summary.html">org.biomoby.client</A></B></TD>
-<TD>The components used for developing Moby clients.</TD>
-</TR>
-</TABLE>
-
-<P>
-
-<TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0" WIDTH="100%">
-<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
-<TD COLSPAN=2><FONT SIZE="+2">
<B>Moby Registry Shared</B></FONT></TD>
</TR>
<TR BGCOLOR="white" CLASS="TableRowColor">
@@ -147,7 +134,7 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
@@ -175,6 +162,6 @@
<!-- =========== END OF NAVBAR =========== -->
<HR>
-<font size="-1"><a href="mailto:mwilkinson at gene.pbi.nrc.ca,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Mar 2 18:52:04 GMT 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri May 9 16:41:04 BST 2003</font>
</BODY>
</HTML>
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/overview-tree.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/docs/API/overview-tree.html 2003/03/02 20:48:24 1.2
+++ /home/repository/moby/moby-live/Java/docs/API/overview-tree.html 2003/05/09 15:51:10 1.3
@@ -2,7 +2,7 @@
<!--NewPage-->
<HTML>
<HEAD>
-<!-- Generated by javadoc on Sun Mar 02 18:52:08 GMT 2003 -->
+<!-- Generated by javadoc on Fri May 09 16:41:07 BST 2003 -->
<TITLE>
Class Hierarchy (MOBY Registry in Java)
</TITLE>
@@ -34,7 +34,7 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
@@ -67,18 +67,19 @@
Hierarchy For All Packages</H2>
</CENTER>
<DL>
-<DT><B>Package Hierarchies:</B><DD><A HREF="org/biomoby/client/package-tree.html">org.biomoby.client</A>, <A HREF="org/biomoby/shared/package-tree.html">org.biomoby.shared</A></DL>
+<DT><B>Package Hierarchies:</B><DD><A HREF="org/biomoby/shared/package-tree.html">org.biomoby.shared</A></DL>
<HR>
<H2>
Class Hierarchy
</H2>
<UL>
<LI TYPE="circle">class java.lang.Object<UL>
-<LI TYPE="circle">class org.biomoby.client.<A HREF="org/biomoby/client/CentralImpl.html"><B>CentralImpl</B></A> (implements org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>)
-<LI TYPE="circle">class <A HREF="MobyCmdLineClient.html"><B>MobyCmdLineClient</B></A><LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html"><B>MobyDataType</B></A><LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html"><B>MobyNamespace</B></A><LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html"><B>MobyService</B></A><LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html"><B>MobyServiceType</B></A><LI TYPE="circle">class <A HREF="TestingCentral.html"><B>TestingCentral</B></A><LI TYPE="circle">class java.lang.Throwable (implements java.io.Serializable)
+<LI TYPE="circle">class <A HREF="MobyCmdLineClient.html"><B>MobyCmdLineClient</B></A><LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyData.html"><B>MobyData</B></A><UL>
+<LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html"><B>MobyPrimaryDataSet</B></A><LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html"><B>MobyPrimaryDataSimple</B></A><LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobySecondaryData.html"><B>MobySecondaryData</B></A></UL>
+<LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html"><B>MobyDataType</B></A><LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyNamespace.html"><B>MobyNamespace</B></A><LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyService.html"><B>MobyService</B></A><LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyServiceType.html"><B>MobyServiceType</B></A><LI TYPE="circle">class java.lang.Throwable (implements java.io.Serializable)
<UL>
<LI TYPE="circle">class java.lang.Exception<UL>
-<LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyException.html"><B>MobyException</B></A><LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/NoSuccessException.html"><B>NoSuccessException</B></A></UL>
+<LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyException.html"><B>MobyException</B></A><LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/NoSuccessException.html"><B>NoSuccessException</B></A><LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/PendingCurationException.html"><B>PendingCurationException</B></A></UL>
</UL>
<LI TYPE="circle">class org.biomoby.shared.<A HREF="org/biomoby/shared/Utils.html"><B>Utils</B></A></UL>
</UL>
@@ -107,7 +108,7 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
@@ -135,6 +136,6 @@
<!-- =========== END OF NAVBAR =========== -->
<HR>
-<font size="-1"><a href="mailto:mwilkinson at gene.pbi.nrc.ca,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Mar 2 18:52:04 GMT 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri May 9 16:41:04 BST 2003</font>
</BODY>
</HTML>
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/package-frame.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/docs/API/package-frame.html 2003/03/02 20:48:24 1.2
+++ /home/repository/moby/moby-live/Java/docs/API/package-frame.html 2003/05/09 15:51:10 1.3
@@ -2,7 +2,7 @@
<!--NewPage-->
<HTML>
<HEAD>
-<!-- Generated by javadoc on Sun Mar 02 18:52:09 GMT 2003 -->
+<!-- Generated by javadoc on Fri May 09 16:41:08 BST 2003 -->
<TITLE>
(MOBY Registry in Java)
</TITLE>
@@ -24,9 +24,7 @@
Classes</FONT>
<FONT CLASS="FrameItemFont">
<BR>
-<A HREF="MobyCmdLineClient.html" TARGET="classFrame">MobyCmdLineClient</A>
-<BR>
-<A HREF="TestingCentral.html" TARGET="classFrame">TestingCentral</A></FONT></TD>
+<A HREF="MobyCmdLineClient.html" TARGET="classFrame">MobyCmdLineClient</A></FONT></TD>
</TR>
</TABLE>
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/package-list,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/docs/API/package-list 2003/03/02 20:48:24 1.2
+++ /home/repository/moby/moby-live/Java/docs/API/package-list 2003/05/09 15:51:10 1.3
@@ -1,3 +1,2 @@
-org.biomoby.client
org.biomoby.shared
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/packages.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/docs/API/packages.html 2003/03/02 20:48:24 1.2
+++ /home/repository/moby/moby-live/Java/docs/API/packages.html 2003/05/09 15:51:10 1.3
@@ -2,7 +2,7 @@
<!--NewPage-->
<HTML>
<HEAD>
-<!-- Generated by javadoc on Sun Mar 02 18:52:09 GMT 2003 -->
+<!-- Generated by javadoc on Fri May 09 16:41:08 BST 2003 -->
<TITLE>
(MOBY Registry in Java)
</TITLE>
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/serialized-form.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/docs/API/serialized-form.html 2003/03/02 20:48:24 1.2
+++ /home/repository/moby/moby-live/Java/docs/API/serialized-form.html 2003/05/09 15:51:10 1.3
@@ -2,7 +2,7 @@
<!--NewPage-->
<HTML>
<HEAD>
-<!-- Generated by javadoc on Sun Mar 02 18:52:10 GMT 2003 -->
+<!-- Generated by javadoc on Fri May 09 16:41:09 BST 2003 -->
<TITLE>
Serialized Form (MOBY Registry in Java)
</TITLE>
@@ -34,7 +34,7 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
@@ -130,6 +130,17 @@
</DL>
<P>
+<A NAME="org.biomoby.shared.PendingCurationException"><!-- --></A>
+<TABLE BORDER="1" CELLPADDING="3" CELLSPACING="0" WIDTH="100%">
+<TR BGCOLOR="#CCCCFF" CLASS="TableSubHeadingColor">
+<TD COLSPAN=2><FONT SIZE="+2">
+<B>Class <A HREF="org/biomoby/shared/PendingCurationException.html">org.biomoby.shared.PendingCurationException</A> implements Serializable</B></FONT></TD>
+</TR>
+</TABLE>
+
+<P>
+
+<P>
<HR>
<!-- ========== START OF NAVBAR ========== -->
@@ -150,7 +161,7 @@
</TABLE>
</TD>
<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Mar 2 18:52:04 GMT 2003</font></EM>
+<font size="-1">Generated: Fri May 9 16:41:04 BST 2003</font></EM>
</TD>
</TR>
@@ -178,6 +189,6 @@
<!-- =========== END OF NAVBAR =========== -->
<HR>
-<font size="-1"><a href="mailto:mwilkinson at gene.pbi.nrc.ca,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Mar 2 18:52:04 GMT 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri May 9 16:41:04 BST 2003</font>
</BODY>
</HTML>
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