[MOBY-guts] biomoby commit

[senger@ebi.ac.uk]

senger
Fri May  9 11:51:10 EDT 2003
Update of /home/repository/moby/moby-live/Java/Clients/help
In directory pub.open-bio.org:/tmp/cvs-serv9113/Clients/help

Modified Files:
	MobyCmdLineClient_usage.txt 
Log Message:
changes reflecting the main API change in BioMoby
moby-live/Java/Clients/help MobyCmdLineClient_usage.txt,1.1,1.2
===================================================================
RCS file: /home/repository/moby/moby-live/Java/Clients/help/MobyCmdLineClient_usage.txt,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- /home/repository/moby/moby-live/Java/Clients/help/MobyCmdLineClient_usage.txt	2003/03/02 20:48:24	1.1
+++ /home/repository/moby/moby-live/Java/Clients/help/MobyCmdLineClient_usage.txt	2003/05/09 15:51:10	1.2
@@ -23,8 +23,6 @@
 
  To get entities by their names:
 
-   -d <data-type-name>
-      print schema of the given data type
    -wsdl <service-name>
       print WSDL of the given service (using the first available
       authority name for such service name)
@@ -35,6 +33,11 @@
 
  To find services given by their attributes:
 
+   -fn <service-name>
+      find services matching this name
+   -fn <service-name,authority>
+      find services matching this name and authority
+
    -ft <service-type>
       find services of the given service type
 
@@ -55,30 +58,35 @@
 
  To register a data type:
 
-   -rd-name <data-type-name>
-   -rd-desc <data-trype-description>
-   -rd-auth <data-type-authority>
-   -rd-xsd  <data-type-XSD-schema>
-      this should be an XML string with an XML Schema definition
-      of this data type; if can also be a file name containing an
-      XML Schema definition
-   -rd-isa  <data-type-parents>
+   -rd-name  <data-type-name>
+   -rd-desc  <data-type-description>
+   -rd-auth  <data-type-authority>
+   -rd-email <data-type-contact>
+   -rd-isa   <data-type-parents>
+      this should be a comma-delimited list of names of the
+      parent data types (but Moby accept now only one parent)
+   -rd-hasa  <data-type-attributes>
       this should be a comma-delimited list of names of the
-      parent data types
+      data types referred from this data type;
+      every element of this list may have two parts
+      separated by a colon: <data-name>:<data-type-name>
 
  To register a service type:
 
-   -rt-name <service-type-name>
-   -rt-desc <service-type-description>
-   -rt-isa  <service-type-parents>
+   -rt-name  <service-type-name>
+   -rt-desc  <service-type-description>
+   -rt-email <service-type-contact>
+   -rt-auth  <service-type-authority>
+   -rt-isa   <service-type-parents>
       this should be a comma-delimited list of names of the
       parent service types
 
  To register a namespace:
 
-   -rn-name <namespace-name>
-   -rn-desc <namespace-description>
-   -rn-auth <namespace-authority>
+   -rn-name  <namespace-name>
+   -rn-desc  <namespace-description>
+   -rn-auth  <namespace-authority>
+   -rn-email <namespace-contact>
 
  To register a service:
 
@@ -86,21 +94,39 @@
    -rs-type  <service-type-name>
    -rs-categ <service-category>
    -rs-desc  <service-description>
-   -rs-auth  <service-authority
+   -rs-auth  <service-authority>
+   -rs-email <service-contact>
    -rs-url   <service-URL>
+   -rs-main  <service-authoritative>  use: 1 or 0
+
    -rs-in    <inputs>
       <inputs> are comma-delimited names of inputs;
       each of them is a pair of an input type and a namespace
       separated by an equal sign... sorry
+
+   -rs-ifile <files-with-inputs>
+      <files-with-inputs> are a comma-separated list of
+      file names defining input data; the files should
+      have format of Java properties, e.g...
+
+   One can combine both methods: -rs-in and -rs-ifile.
+
    -rs-out   <outputs>
       <outputs> are comma-delimited names of output types
 
+   -rs-ofile <files-with-outputs>
+      <files-with-outputs> are a comma-separated list of
+      file names defining output data; the files should
+      have format of Java properties, e.g...
+
+   One can combine both methods: -rs-out and -rs-ofile.
+
  To unregister various entities:
 
-   -ud <id>  ... unregister data type known under this id
-   -ut <id>  ... unregister service type known under this id
-   -un <id>  ... unregister namespace known under this id
-   -us <id>  ... unregister service known under this id
+   -ud <name>  ... unregister data type known under this name
+   -ut <name>  ... unregister service type known under this name
+   -un <name>  ... unregister namespace known under this name
+   -us <name,authority>  ... unregister service known under this name
 
  And the rest:
 
@@ -113,4 +139,4 @@
      Note that this method is meant mostly for debugging and may
      be depracated later.
 
-
+   -debug  ... print debug messages