[MOBY-guts] biomoby commit

[senger@ebi.ac.uk]

senger
Sun Mar  2 16:23:17 EST 2003
Update of /home/repository/moby/moby-live/Java
In directory pub.open-bio.org:/tmp/cvs-serv26284

Modified Files:
	setenv.csh.template setenv.sh.template 
Log Message:
added Java library for convenience
moby-live/Java setenv.csh.template,1.2,1.3 setenv.sh.template,1.3,1.4
===================================================================
RCS file: /home/repository/moby/moby-live/Java/setenv.csh.template,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Java/setenv.csh.template	2003/03/02 20:48:24	1.2
+++ /home/repository/moby/moby-live/Java/setenv.csh.template	2003/03/02 21:23:17	1.3
@@ -10,6 +10,9 @@
 # to make changes only here.
 # -----------------------------------------------------------
 
+# --- a root diretory where this file is located
+setenv PROJECT_HOME `pwd`
+
 # --- Apache-Axis environment
 setenv AXIS_HOME /usr/local/java/axis
 
@@ -17,14 +20,11 @@
 setenv SERVLET_CLASSES /usr/local/jakarta-servletapi/lib/servlet.jar:/usr/local/jakarta-servletapi/lib/Software/jakarta-catalina/common/lib/activation.jar
 
 # --- access to the SAX parser classes
-setenv XML_CLASSES `find /usr/local/xerces/ -name \*.jar -printf "%p:"`
+setenv XML_CLASSES `find ${PROJECT_HOME}/lib -name x\*.jar -printf "%p:"`
 
 # --- sometimes we need more from the Java libs
 setenv JAVA_HOME /sw/arch/java/JDK2/latest
 
-# --- a root diretory where this file is located
-setenv PROJECT_HOME `pwd`
-
 # --- libraries of general tools
 setenv TOOLS_CLASSES ${PROJECT_HOME}/lib/alltools.jar
 
@@ -37,7 +37,7 @@
 
 setenv AXIS_CLASSES `find ${AXIS_HOME}/lib/ -name \*.jar -printf "%p:"`
 
-setenv CLASSPATH ${PROJECT_HOME}:${PROJECT_HOME}/Clients:${TOOLS_CLASSES}:${AXIS_CLASSES}:${SERVLET_CLASSES}
+setenv CLASSPATH ${PROJECT_HOME}:${PROJECT_HOME}/Clients:${TOOLS_CLASSES}:${AXIS_CLASSES}:${XML_CLASSES}:${SERVLET_CLASSES}
 
 # --- for using Jikes to compile Java sources
 setenv JIKESPATH ${CLASSPATH}:${JAVA_HOME}/jre/lib/rt.jar

===================================================================
RCS file: /home/repository/moby/moby-live/Java/setenv.sh.template,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Java/setenv.sh.template	2003/03/02 20:48:24	1.3
+++ /home/repository/moby/moby-live/Java/setenv.sh.template	2003/03/02 21:23:17	1.4
@@ -10,6 +10,9 @@
 # to make changes only here.
 # -----------------------------------------------------------
 
+# --- a root diretory where this file is located
+export PROJECT_HOME=`pwd`
+
 # --- Apache-Axis environment
 export AXIS_HOME=/usr/local/axis
 
@@ -17,14 +20,11 @@
 export SERVLET_CLASSES=${HOME}/Software/jakarta-catalina/common/lib/servlet.jar:${HOME}/Software/jakarta-catalina/common/lib/activation.jar
 
 # --- access to the SAX parser classes
-export XML_CLASSES=`find /usr/local/xerces/ -name \*.jar -printf "%p:"`
+export XML_CLASSES=`find ${PROJECT_HOME}/lib -name x\*.jar -printf "%p:"`
 
 # --- sometimes we need more from the Java libs
 export JAVA_HOME=/usr/local/java
 
-# --- a root diretory where this file is located
-export PROJECT_HOME=`pwd`
-
 # --- libraries of general tools
 export TOOLS_CLASSES=${PROJECT_HOME}/lib/alltools.jar