[MOBY-guts] biomoby commit

senger@ebi.ac.uk senger at pub.open-bio.org
Fri Jun 20 11:08:05 UTC 2003 

senger
Fri Jun 20 07:08:05 EDT 2003
Update of /home/repository/moby/moby-live/Java/docs/API
In directory pub.open-bio.org:/tmp/cvs-serv16960/docs/API

Modified Files:
	MobyCmdLineClient.html allclasses-frame.html 
	allclasses-noframe.html constant-values.html help-doc.html 
	index-all.html index.html overview-frame.html 
	overview-summary.html overview-tree.html package-frame.html 
	packages.html serialized-form.html 
Log Message:
retrieveObjectDefinition added

moby-live/Java/docs/API MobyCmdLineClient.html,1.3,1.4 allclasses-frame.html,1.4,1.5 allclasses-noframe.html,1.4,1.5 constant-values.html,1.4,1.5 help-doc.html,1.4,1.5 index-all.html,1.4,1.5 index.html,1.4,1.5 overview-frame.html,1.4,1.5 overview-summary.html,1.4,1.5 overview-tree.html,1.4,1.5 package-frame.html,1.4,1.5 packages.html,1.4,1.5 serialized-form.html,1.4,1.5
===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/MobyCmdLineClient.html,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- /home/repository/moby/moby-live/Java/docs/API/MobyCmdLineClient.html	2003/06/15 15:24:14	1.3
+++ /home/repository/moby/moby-live/Java/docs/API/MobyCmdLineClient.html	2003/06/20 11:08:05	1.4
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Sun Jun 15 15:57:56 BST 2003 -->
+<!-- Generated by javadoc on Fri Jun 20 12:01:35 BST 2003 -->
 <TITLE>
 MobyCmdLineClient (MOBY Registry in Java)
 </TITLE>
@@ -36,7 +36,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -254,7 +254,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -288,6 +288,6 @@
 <!-- =========== END OF NAVBAR =========== -->
 
 <HR>
-<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Jun 15 15:57:49 BST 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri Jun 20 12:01:28 BST 2003</font>
 </BODY>
 </HTML>

===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/allclasses-frame.html,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/docs/API/allclasses-frame.html	2003/06/15 15:24:14	1.4
+++ /home/repository/moby/moby-live/Java/docs/API/allclasses-frame.html	2003/06/20 11:08:05	1.5
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Sun Jun 15 15:57:55 BST 2003 -->
+<!-- Generated by javadoc on Fri Jun 20 12:01:35 BST 2003 -->
 <TITLE>
 All Classes (MOBY Registry in Java)
 </TITLE>

===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/allclasses-noframe.html,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/docs/API/allclasses-noframe.html	2003/06/15 15:24:14	1.4
+++ /home/repository/moby/moby-live/Java/docs/API/allclasses-noframe.html	2003/06/20 11:08:05	1.5
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Sun Jun 15 15:57:55 BST 2003 -->
+<!-- Generated by javadoc on Fri Jun 20 12:01:35 BST 2003 -->
 <TITLE>
 All Classes (MOBY Registry in Java)
 </TITLE>

===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/constant-values.html,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/docs/API/constant-values.html	2003/06/15 15:24:14	1.4
+++ /home/repository/moby/moby-live/Java/docs/API/constant-values.html	2003/06/20 11:08:05	1.5
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Sun Jun 15 15:57:54 BST 2003 -->
+<!-- Generated by javadoc on Fri Jun 20 12:01:34 BST 2003 -->
 <TITLE>
 Constant Field Values (MOBY Registry in Java)
 </TITLE>
@@ -34,7 +34,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -124,7 +124,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -152,6 +152,6 @@
 <!-- =========== END OF NAVBAR =========== -->
 
 <HR>
-<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Jun 15 15:57:49 BST 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri Jun 20 12:01:28 BST 2003</font>
 </BODY>
 </HTML>

===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/help-doc.html,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/docs/API/help-doc.html	2003/06/15 15:24:14	1.4
+++ /home/repository/moby/moby-live/Java/docs/API/help-doc.html	2003/06/20 11:08:05	1.5
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Sun Jun 15 15:57:58 BST 2003 -->
+<!-- Generated by javadoc on Fri Jun 20 12:01:37 BST 2003 -->
 <TITLE>
 API Help (MOBY Registry in Java)
 </TITLE>
@@ -34,7 +34,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -137,7 +137,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -165,6 +165,6 @@
 <!-- =========== END OF NAVBAR =========== -->
 
 <HR>
-<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Jun 15 15:57:49 BST 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri Jun 20 12:01:28 BST 2003</font>
 </BODY>
 </HTML>

===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/index-all.html,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/docs/API/index-all.html	2003/06/15 15:24:14	1.4
+++ /home/repository/moby/moby-live/Java/docs/API/index-all.html	2003/06/20 11:08:05	1.5
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Sun Jun 15 15:57:55 BST 2003 -->
+<!-- Generated by javadoc on Fri Jun 20 12:01:34 BST 2003 -->
 <TITLE>
 Index (MOBY Registry in Java)
 </TITLE>
@@ -34,7 +34,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -71,7 +71,7 @@
 <DT><A HREF="org/biomoby/shared/MobyDataType.html#addChild(java.lang.String, java.lang.String)"><B>addChild(String, String)</B></A> - 
 Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyDataType.html">MobyDataType</A>
 <DD>'name' is a name given to this child (attribute)
- 'typeName' is a name of a type represented byte this child
+ 'typeName' is a name of a type represented by this child
 <DT><A HREF="org/biomoby/shared/MobyPrimaryDataSet.html#addElement(org.biomoby.shared.MobyPrimaryDataSimple)"><B>addElement(MobyPrimaryDataSimple)</B></A> - 
 Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSet.html">MobyPrimaryDataSet</A>
 <DD>&nbsp;
@@ -201,6 +201,9 @@
 <DT><A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html#getDataType()"><B>getDataType()</B></A> - 
 Method in class org.biomoby.shared.<A HREF="org/biomoby/shared/MobyPrimaryDataSimple.html">MobyPrimaryDataSimple</A>
 <DD>&nbsp;
+<DT><A HREF="org/biomoby/shared/Central.html#getDataType(java.lang.String)"><B>getDataType(String)</B></A> - 
+Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
+<DD>Get definition of the given data type.
 <DT><A HREF="org/biomoby/shared/Central.html#getDataTypeNames()"><B>getDataTypeNames()</B></A> - 
 Method in interface org.biomoby.shared.<A HREF="org/biomoby/shared/Central.html">Central</A>
 <DD>Get the list of all registered data types.
@@ -647,7 +650,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -675,6 +678,6 @@
 <!-- =========== END OF NAVBAR =========== -->
 
 <HR>
-<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Jun 15 15:57:49 BST 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri Jun 20 12:01:28 BST 2003</font>
 </BODY>
 </HTML>

===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/index.html,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/docs/API/index.html	2003/06/15 15:24:14	1.4
+++ /home/repository/moby/moby-live/Java/docs/API/index.html	2003/06/20 11:08:05	1.5
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Sun Jun 15 15:57:55 BST 2003-->
+<!-- Generated by javadoc on Fri Jun 20 12:01:35 BST 2003-->
 <TITLE>
 MOBY Registry in Java
 </TITLE>

===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/overview-frame.html,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/docs/API/overview-frame.html	2003/06/15 15:24:14	1.4
+++ /home/repository/moby/moby-live/Java/docs/API/overview-frame.html	2003/06/20 11:08:05	1.5
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Sun Jun 15 15:57:55 BST 2003 -->
+<!-- Generated by javadoc on Fri Jun 20 12:01:35 BST 2003 -->
 <TITLE>
 Overview (MOBY Registry in Java)
 </TITLE>
@@ -20,7 +20,7 @@
 <TABLE BORDER="0" WIDTH="100%">
 <TR>
 <TD NOWRAP><FONT size="+1" CLASS="FrameTitleFont">
-<B><font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></B></FONT></TD>
+<B><font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></B></FONT></TD>
 </TR>
 </TABLE>
 

===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/overview-summary.html,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/docs/API/overview-summary.html	2003/06/15 15:24:14	1.4
+++ /home/repository/moby/moby-live/Java/docs/API/overview-summary.html	2003/06/20 11:08:05	1.5
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Sun Jun 15 15:57:55 BST 2003 -->
+<!-- Generated by javadoc on Fri Jun 20 12:01:35 BST 2003 -->
 <TITLE>
 Overview (MOBY Registry in Java)
 </TITLE>
@@ -35,7 +35,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -134,7 +134,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -162,6 +162,6 @@
 <!-- =========== END OF NAVBAR =========== -->
 
 <HR>
-<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Jun 15 15:57:49 BST 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri Jun 20 12:01:28 BST 2003</font>
 </BODY>
 </HTML>

===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/overview-tree.html,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/docs/API/overview-tree.html	2003/06/15 15:24:14	1.4
+++ /home/repository/moby/moby-live/Java/docs/API/overview-tree.html	2003/06/20 11:08:05	1.5
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Sun Jun 15 15:57:55 BST 2003 -->
+<!-- Generated by javadoc on Fri Jun 20 12:01:34 BST 2003 -->
 <TITLE>
 Class Hierarchy (MOBY Registry in Java)
 </TITLE>
@@ -34,7 +34,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -108,7 +108,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -136,6 +136,6 @@
 <!-- =========== END OF NAVBAR =========== -->
 
 <HR>
-<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Jun 15 15:57:49 BST 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri Jun 20 12:01:28 BST 2003</font>
 </BODY>
 </HTML>

===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/package-frame.html,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/docs/API/package-frame.html	2003/06/15 15:24:14	1.4
+++ /home/repository/moby/moby-live/Java/docs/API/package-frame.html	2003/06/20 11:08:05	1.5
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Sun Jun 15 15:57:55 BST 2003 -->
+<!-- Generated by javadoc on Fri Jun 20 12:01:35 BST 2003 -->
 <TITLE>
  (MOBY Registry in Java)
 </TITLE>

===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/packages.html,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/docs/API/packages.html	2003/06/15 15:24:14	1.4
+++ /home/repository/moby/moby-live/Java/docs/API/packages.html	2003/06/20 11:08:05	1.5
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Sun Jun 15 15:57:55 BST 2003 -->
+<!-- Generated by javadoc on Fri Jun 20 12:01:35 BST 2003 -->
 <TITLE>
  (MOBY Registry in Java)
 </TITLE>

===================================================================
RCS file: /home/repository/moby/moby-live/Java/docs/API/serialized-form.html,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- /home/repository/moby/moby-live/Java/docs/API/serialized-form.html	2003/06/15 15:24:14	1.4
+++ /home/repository/moby/moby-live/Java/docs/API/serialized-form.html	2003/06/20 11:08:05	1.5
@@ -2,7 +2,7 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc on Sun Jun 15 15:57:58 BST 2003 -->
+<!-- Generated by javadoc on Fri Jun 20 12:01:37 BST 2003 -->
 <TITLE>
 Serialized Form (MOBY Registry in Java)
 </TITLE>
@@ -34,7 +34,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -161,7 +161,7 @@
 </TABLE>
 </TD>
 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
-<font size="-1">Generated: Sun Jun 15 15:57:49 BST 2003</font></EM>
+<font size="-1">Generated: Fri Jun 20 12:01:28 BST 2003</font></EM>
 </TD>
 </TR>
 
@@ -189,6 +189,6 @@
 <!-- =========== END OF NAVBAR =========== -->
 
 <HR>
-<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Sun Jun 15 15:57:49 BST 2003</font>
+<font size="-1"><a href="mailto:markw at illuminae.com,senger at ebi.ac.uk">Submit a bug or feature</a><BR>Generated: Fri Jun 20 12:01:28 BST 2003</font>
 </BODY>
 </HTML>

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