[MOBY-guts] biomoby commit

[Mark Wilkinson]

mwilkinson
Tue Jun 10 19:58:26 EDT 2003
Update of /home/repository/moby/moby-live/Perl/MOBY/Client
In directory pub.open-bio.org:/tmp/cvs-serv2045/MOBY/Client

Modified Files:
	Central.html Central.pm 
Log Message:
WrrrrrrrrRRRRRRRR  the retrieval of WSDL (illegitimate as it may be) suddenly kicks back into life.  Fixed documentation of MOBY::Client::Central to fix the pod2html output.

moby-live/Perl/MOBY/Client Central.html,1.2,1.3 Central.pm,1.31,1.32
===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOBY/Client/Central.html,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- /home/repository/moby/moby-live/Perl/MOBY/Client/Central.html	2003/06/06 00:45:47	1.2
+++ /home/repository/moby/moby-live/Perl/MOBY/Client/Central.html	2003/06/10 23:58:26	1.3
@@ -37,6 +37,7 @@
 		<li><a href="#retrieveobjectnames">retrieveObjectNames</a></li>
 		<li><a href="#retrievenamespaces">retrieveNamespaces</a></li>
 		<li><a href="#retrieveobject">retrieveObject</a></li>
+		<li><a href="#retrieveobjectdefinition">retrieveObjectDefinition</a></li>
 		<li><a href="#dump">DUMP</a></li>
 	</ul>
 
@@ -229,17 +230,17 @@
             
     secondary: hashref
             secondary =&gt; {parametername1 =&gt; {
-                            datatype =&gt; TYPE,
-                            default =&gt; DEFAULT,
-                            max =&gt; MAX,
-                            min =&gt; MIN,
-                            enum =&gt; [one, two]},
+                           datatype =&gt; TYPE,
+                           default =&gt; DEFAULT,
+                           max =&gt; MAX,
+                           min =&gt; MIN,
+                           enum =&gt; [one, two]},
                           parametername2 =&gt; {
-                            datatype =&gt; TYPE,
-                            default =&gt; DEFAULT,
-                            max =&gt; MAX,
-                            min =&gt; MIN,
-                            enum =&gt; [one, two]}
+                           datatype =&gt; TYPE,
+                           default =&gt; DEFAULT,
+                           max =&gt; MAX,
+                           min =&gt; MIN,
+                           enum =&gt; [one, two]}
                           }</pre>
 <p>
 </p>
@@ -277,13 +278,14 @@
      input =&gt;{
               articleName1 =&gt; [objType1 =&gt; [ns1, ns2...]], # Simple
               articleName2 =&gt; [[objType2 =&gt; [ns3, ns4...]]], # collection of one object type
-              articleName3 =&gt; [[objType3 =&gt; [ns3, ns4...]], [objType4 =&gt; [ns5, ns6]]], # collection of multiple object types
-             }</pre>
-<pre>
+              articleName3 =&gt; [[objType3 =&gt; [ns3, ns4...]],
+                               [objType4 =&gt; [ns5, ns6]]], # collection of multiple object types
+             }
      output =&gt;{
-              articleName1 =&gt; [objType1 =&gt; [ns1, ns2...]], # Simple
-              articleName2 =&gt; [[objType2 =&gt; [ns3, ns4...]]], # collection of one object type
-              articleName3 =&gt; [[objType3 =&gt; [ns3, ns4...]], [objType4 =&gt; [ns5, ns6]]], # collection of multiple object types
+               articleName1 =&gt; [objType1 =&gt; [ns1, ns2...]], # Simple
+               articleName2 =&gt; [[objType2 =&gt; [ns3, ns4...]]], # collection of one object type
+               articleName3 =&gt; [[objType3 =&gt; [ns3, ns4...]],
+                                [objType4 =&gt; [ns5, ns6]]], # collection of multiple object types
              }</pre>
 <p>
 </p>
@@ -360,6 +362,16 @@
                 $name - object name (from ontology) or &quot;all&quot; to get all objects</pre>
 <p>
 </p>
+<h2><a name="retrieveobjectdefinition">retrieveObjectDefinition</a></h2>
+<pre>
+ Title     :    retrieveObjectDefinition
+ Usage     :    $def = $MOBY-&gt;retrieveObjectDefinition($name, [$regname])
+ Function  :    To get the full definition of an object
+ Returns   :    returns hashref to an identical hash to the one that was passed to
+                registerObjectClass during initial registration of the object
+ Args      :    $name - object name (from ontology)</pre>
+<p>
+</p>
 <h2><a name="dump">DUMP</a></h2>
 <pre>
  Title     :    DUMP

===================================================================
RCS file: /home/repository/moby/moby-live/Perl/MOBY/Client/Central.pm,v
retrieving revision 1.31
retrieving revision 1.32
diff -u -r1.31 -r1.32
--- /home/repository/moby/moby-live/Perl/MOBY/Client/Central.pm	2003/06/10 17:12:53	1.31
+++ /home/repository/moby/moby-live/Perl/MOBY/Client/Central.pm	2003/06/10 23:58:26	1.32
@@ -480,17 +480,17 @@
             
     secondary: hashref
             secondary => {parametername1 => {
-                            datatype => TYPE,
-                            default => DEFAULT,
-                            max => MAX,
-                            min => MIN,
-                            enum => [one, two]},
+                           datatype => TYPE,
+                           default => DEFAULT,
+                           max => MAX,
+                           min => MIN,
+                           enum => [one, two]},
                           parametername2 => {
-                            datatype => TYPE,
-                            default => DEFAULT,
-                            max => MAX,
-                            min => MIN,
-                            enum => [one, two]}
+                           datatype => TYPE,
+                           default => DEFAULT,
+                           max => MAX,
+                           min => MIN,
+                           enum => [one, two]}
                           }
 		
 
@@ -710,18 +710,20 @@
      input =>{
               articleName1 => [objType1 => [ns1, ns2...]], # Simple
               articleName2 => [[objType2 => [ns3, ns4...]]], # collection of one object type
-              articleName3 => [[objType3 => [ns3, ns4...]], [objType4 => [ns5, ns6]]], # collection of multiple object types
+              articleName3 => [[objType3 => [ns3, ns4...]],
+                               [objType4 => [ns5, ns6]]], # collection of multiple object types
              }
-   
-
      output =>{
-              articleName1 => [objType1 => [ns1, ns2...]], # Simple
-              articleName2 => [[objType2 => [ns3, ns4...]]], # collection of one object type
-              articleName3 => [[objType3 => [ns3, ns4...]], [objType4 => [ns5, ns6]]], # collection of multiple object types
+               articleName1 => [objType1 => [ns1, ns2...]], # Simple
+               articleName2 => [[objType2 => [ns3, ns4...]]], # collection of one object type
+               articleName3 => [[objType3 => [ns3, ns4...]],
+                                [objType4 => [ns5, ns6]]], # collection of multiple object types
              }
 
+
 =cut
 
+
 sub findService {
 
 	my ($self, %a) = @_;
@@ -1149,6 +1151,7 @@
 
 =head2 DUMP
 
+
  Title     :	DUMP
  Usage     :	$objects = $MOBY->DUMP(['registry'])
  Function  :	DUMP the mysql for the current MOBY Central database