[MOBY-dev] creating primary inputs from scratch

[Mark]

talk to Eddie!!   He's almost finished writing this...




On Fri, 20 Feb 2009 02:35:25 -0800, Michael Gerlich  
<mgerlich at ipb-halle.de> wrote:

> Hi all,
>
> I want to create a simple JUnit test case that tests if all services  
> we're offering (in both default and testing registry) are working. I'am  
> stuck in creating primary inputs for datatypes other than Object,  
> especially ArrayString, ArrayFloat and MSPeakRelList - all defined in  
> both registries.
>
> I modified this example
> http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Java/docs/SimpleClient.html#helloWorld
>
> An MSPeakRelList is a list/array of MSPeakRel members. MSPeakRel has two  
> children mz and relInt, defining a peak.
>
> Here is what I do in order to create such a datatype as input for a  
> service:
>
> MSPeakRelList msList = new MSPeakRelList();
>        MSPeakRel ms1 = new MSPeakRel();
> ms1.set_mz(153.3);
> ms1.set_relInt(316);
>       MSPeakRel ms2 = new MSPeakRel();
> ms2.set_mz(273.069);
> ms2.set_relInt(999);
>     MSPeakRel[] peaks = new MSPeakRel[2];
> for (int i = 0; i < peaks.length; i++) {
>       peaks[i] = new MSPeakRel();
> }
> peaks[0] = ms1;
> peaks[1] = ms2;
> msList.set_MSPeakRel(peaks);
>
>
> The simple client uses the MobyRequest function setInput(). It's  
> arguments are either of type MobyContentInstance or MobyDataInstance.
> Now what am I supposed to do to correctly set msList as primary input to  
> a service (MassBank_QSearch_Test, testing reg).
>
> BTW, it has gotten quiet on the mailing lists...
>
>
> Kind regards,
>
> Michael
> _______________________________________________
> MOBY-dev mailing list
> MOBY-dev at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/moby-dev
>



-- 
Using Opera's revolutionary e-mail client: http://www.opera.com/mail/