[MOBY-dev] Executing Moby Workflow straight from java

[Jerzy Orlowski]

Hi

I am trying to use your code, but I get strange erros like:

The constructor EngineImpl(EngineConfiguration) is undefined

Perhaps I am working on different versions of the code (some from 
taverna, some from ogasadai and some from freefluo).

Where can I find source code or javadoc for 
uk/ac/soton/itinnovation/freefluo/main/EngineImpl.class and other classes?

I cannot find in anywhere on the web....

Jerzy


Sergio Ramirez Ramirez wrote:
> Here there is my small contribution, just the two methods that I use for 
> run a workflow.
> Hope it can help to someone
> 
> Paul Gordon wrote:
>> I think whoever has a headless Taverna workflow creation and/or 
>> enactment working should put examples up in the Java developer's 
>> section of the Moby Web site...I believe the myExperiment people also 
>> have a headless workflow enactment engine working now...anyone from 
>> there on this list?  Also, Paolo Romano in Italy has a headless SCUFL 
>> enactor in the BioWEP software. So many people are doing this, but no 
>> good sample code is easily available, especially for Moby services...
>>
>> Sergio Ramirez Ramirez wrote:
>>> Hello Jerzy
>>>
>>> I had the same problem that you.
>>>
>>> I have got it to work by browsing deep in the Taverna code. I cannot 
>>> give you many sample code because I'm trying to organize all the code 
>>> tries and examples that I have.
>>>
>>> But I can give you some comments:
>>>
>>> For build a workflow model the class is: 
>>> org.embl.ebi.escience.scufl.ScuflModel, just do ScuflModel model = 
>>> new ScuflModel();
>>> This class contains the methods that you mention addProcessor ...
>>>
>>> For run I'm using freeflow, because taverna classes and raven are a 
>>> "little" tricky. The classes:  
>>> uk.ac.soton.itinnovation.freefluo.main.Engine or 
>>> org.embl.ebi.escience.scufl.enactor.implementation.FreefluoEnactorProxy 
>>> can help you.
>>>
>>> I hope this little details help you to begin. If you have more 
>>> detailed questions I will be very happy of help you.
>>>
>>> Best regards,
>>> Sergio
>>>
>>> Jerzy Orlowski wrote:
>>>> Hi
>>>>
>>>> I have several hundreds of workflows made up of BioMoby Services and 
>>>> want to execute them all without opening any GUI.
>>>>
>>>> I was looking for some solution over the internet and the think I 
>>>> came across was using Taverna plugin and try to execute it 
>>>> programaticaly.
>>>> I have a few questions:
>>>>
>>>> 1. Is it the only way?
>>>>
>>>> 2. I found several tutorial tutorials on running  saved workflow 
>>>> saved in scufl language.
>>>> http://www.mygrid.org.uk/usermanual1.7/executeworkflowprogram_source.html 
>>>>
>>>>
>>>> How do you one make a workflow step by step? like:
>>>>
>>>> workflow.addProcesor(...)
>>>> workflow.addConnector(...)
>>>> ...
>>>> workflow.execute()
>>>>
>>>> and especially, how do one add BioMoby objects this way? Is there 
>>>> any tutorial or do I have go though the API?
>>>>
>>>> Best
>>>>
>>>> Jerzy Orlowski
>>>>
>>>> _______________________________________________
>>>> MOBY-dev mailing list
>>>> MOBY-dev at lists.open-bio.org
>>>> http://lists.open-bio.org/mailman/listinfo/moby-dev
>>>>
>>>
>>>
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> 
>