[MOBY-dev] Executing Moby Workflow straight from java

[Sergio Ramirez Ramirez]

Hello Jerzy

I had the same problem that you.

I have got it to work by browsing deep in the Taverna code. I cannot 
give you many sample code because I'm trying to organize all the code 
tries and examples that I have.

But I can give you some comments:

For build a workflow model the class is: 
org.embl.ebi.escience.scufl.ScuflModel, just do ScuflModel model = new 
ScuflModel();
This class contains the methods that you mention addProcessor ...

For run I'm using freeflow, because taverna classes and raven are a 
"little" tricky. The classes:  
uk.ac.soton.itinnovation.freefluo.main.Engine or 
org.embl.ebi.escience.scufl.enactor.implementation.FreefluoEnactorProxy 
can help you.

I hope this little details help you to begin. If you have more detailed 
questions I will be very happy of help you.

Best regards,
Sergio

Jerzy Orlowski wrote:
> Hi
>
> I have several hundreds of workflows made up of BioMoby Services and 
> want to execute them all without opening any GUI.
>
> I was looking for some solution over the internet and the think I came 
> across was using Taverna plugin and try to execute it programaticaly.
> I have a few questions:
>
> 1. Is it the only way?
>
> 2. I found several tutorial tutorials on running  saved workflow saved 
> in scufl language.
> http://www.mygrid.org.uk/usermanual1.7/executeworkflowprogram_source.html
>
> How do you one make a workflow step by step? like:
>
> workflow.addProcesor(...)
> workflow.addConnector(...)
> ...
> workflow.execute()
>
> and especially, how do one add BioMoby objects this way? Is there any 
> tutorial or do I have go though the API?
>
> Best
>
> Jerzy Orlowski
>
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>


-- 
Sergio Ramírez Ramírez
Instituto Nacional de Bioinformática (INB)
Integrated Bioinformatics Node (GNV-5)
Dpto. de Arquitectura de Computadores
Campus Universitario de Teatinos, despacho 2.3.9a
29071 Málaga (Spain) +34 95 213 3387


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