[MOBY-dev] jmoby using cached datatypes etc

[groscurt]

this is an example code:

Central central = new CentralDigestCachedImpl(
"/home/pcb/groscurt/moby-live/Java/myCache" );
MobyService mobyService = new MobyService();
mobyService.setAuthority( "arabidopsis.org" );
mobyService.setName( "Locus2Publications" );
mobyService.setCategory( "" );
mobyService = central.findService( mobyService )[0];

MobyRequest mobyRequest = new MobyRequest( central );
mobyRequest.setService( mobyService );
mobyRequest.setInput( new MobyDataObject("AGI_LocusCode", "at4g30110") );

running this starts to download the ontologies from biomoby.org. I guess the
handling of the MobyRequest stuff is the problem here - but how to solve
that ?

Best and thanks
andreas

----------------original message-----------------
From: "Martin Senger" martin.senger at gmail.com
To: "Core developer announcements" moby-dev at lists.open-bio.org
Date: Wed, 25 Jun 2008 18:54:43 +0800
-------------------------------------------------
>> but if i understand it correctly the CentralDigestCachedImpl does access
a
>> default moby registry and then caches it locally.
> 
> 
> Actually no. The class gets, in its constructor, a local directory where
the
> cached ontology are located, and uses it. Only if the cache is empty, it
> tries to fill it.
> 
> 
>> What I'm interessted in is not to access any registry at all for getting
>> the ontologies.
>> My sitatuation is that i query the moby central to find some services
based
>> on e.g. their input and output parameters.
> 
> 
> The cache does not have the "find" method - we did not want to replicate
the
> whole registry's API. But because all ontologies are locally available, it
> is easy to get them all (that's why the class is also called "digest",
> because it provides the cumulative methods that the registry's API does
not
> provide in all cases) and iterate over them and make your search as you
> wish.
> 
> Martin
> 
> -- 
> Martin Senger
> email: martin.senger at gmail.com,m.senger at cgiar.org
> skype: martinsenger
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