[MOBY-dev] Dead services and how to figure them out
Moritz W
M4o at gmx.de
Tue Jun 17 14:45:21 UTC 2008
That's strange...
I tried under my windows maschine with ie and firefox.
And also under a linux box with lynx:
Umgeleitet nach file://localhost/tmp/XXXXnGKM8O/L27195-776TMP.txt
Wget doesn't work (maybe wrong my wrong/missing params):
linux03 /> wget http://moby.ucalgary.ca/moby/ValidateService
--16:40:40-- http://moby.ucalgary.ca/moby/ValidateService
=> `ValidateService'
Auflösen des Hostnamen »moby.ucalgary.ca«.... 136.159.169.80
Connecting to moby.ucalgary.ca|136.159.169.80|:80... verbunden.
HTTP Anforderung gesendet, warte auf Antwort... 200 OK
Länge: nicht spezifiziert [text/plain]
ValidateService: Keine Berechtigung
I attached my result.
Hope my tests make sense...
-------- Original-Nachricht --------
> Datum: Tue, 17 Jun 2008 07:01:45 -0700
> Von: "Edward Kawas" <edward.kawas at gmail.com>
> An: "\'Core developer announcements\'" <moby-dev at lists.open-bio.org>
> Betreff: Re: [MOBY-dev] Dead services and how to figure them out
> I get the same behaviour ... I am looking into it!
>
> Eddie
>
> -----Original Message-----
> From: moby-dev-bounces at lists.open-bio.org
> [mailto:moby-dev-bounces at lists.open-bio.org] On Behalf Of Andreas
> Groscurth
> Sent: June-17-08 5:40 AM
> To: Core developer announcements
> Subject: Re: [MOBY-dev] Dead services and how to figure them out
>
> weird..
>
> also with deleting the browser cache - i only get the list to
>
> moby.ucalgary.ca
>
>
> regardlessly with or without param :(
>
> andreas
>
> M4o at gmx.de wrote:
> > Hi all,
> >
> > Andreas maybe try a reload.
> > For me it works for all auths.
> >
> > In my Tool I use the adress with param:
> http://moby.ucalgary.ca/moby/ValidateService?getDeadServices
> >
> > Maybe it is possible to extend the testing of the VaildateService
> function.
> >
> > Moritz
> >
> > -------- Original-Nachricht --------
> >
> >> Datum: Tue, 17 Jun 2008 14:17:27 +0200
> >> Von: Andreas Groscurth <groscurt at mpiz-koeln.mpg.de>
> >> An: Core developer announcements <moby-dev at lists.open-bio.org>
> >> Betreff: Re: [MOBY-dev] Dead services and how to figure them out
> >>
> >
> >
> >> Paul Gordon wrote:
> >>
> >>> Hi all,
> >>>
> >>> I'll respond to several posts at once:
> >>>
> >>> 1. There is a list of dead services at Moby Central, but it is not
> >>> used by default in the jMoby API, and it's not part of the formal API.
> >>> http://moby.ucalgary.ca/moby/ValidateService. Eddie, should it be?
> >>>
> >> thanks for the link - but for me it stops at
> >>
> >> moby.ucalgary.ca
> >>
> >> what about the other authorities ?
> >>
> >> Thanks
> >> andreas
> >> _______________________________________________
> >> MOBY-dev mailing list
> >> MOBY-dev at lists.open-bio.org
> >> http://lists.open-bio.org/mailman/listinfo/moby-dev
> >>
> >
> >
>
> _______________________________________________
> MOBY-dev mailing list
> MOBY-dev at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/moby-dev
>
> _______________________________________________
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> http://lists.open-bio.org/mailman/listinfo/moby-dev
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The following are services, sorted by Service Provider, have been identified as "dead" by the MOBY Service Testing agent.
A "dead" service is one that does not respond correctly to a MOBY "ping"; where a correct "ping" request/response is:
REQUEST
<MOBY>
<mobyContent></mobyContent>
</MOBY>
RESPONSE
<MOBY>
<mobyContent></mobyContent>
</MOBY>
The status of all services is tested hourly, and is recorded in the
LSID metadata for each service as a boolean value in the RDF tag
"isAlive", which may be used by client software to filter-out
non-functional services.
CDK.SF.NET
CalculateAccurateMass
ab.wur.nl
MetwareGetExperimentRaw
random_number
xcmsFindPeaks
arabidopsis.info
getArabidopsisImageByNASCinsertNumber
getArabidopsisImageByNASCstockCode
arexdb.org
getGOCollection
asrp.cgrb.oregonstate.edu
ASRP_miRNA_target_in_AGI
ASRP_smallRNA_hit_in_IGR_downstream_of_AGI
ASRP_smallRNA_hit_in_IGR_upstream_of_AGI
ASRP_smallRNA_sequence_from_chromosomal_AGI
bibiserv.techfak.uni-bielefeld.de
RNAShapes_ConsensusShapes
RNAShapes_Sampling
RNAShapes_ShapeFolding
RNAShapes_ShapeProbabilities
RNAShapes_SuboptimalShapeFolding
bioassist.nl
BioAssistSequenceSorter
bioinfo.cipf.es
displayDifferentialExpressionTest
runDifferentialExpressionTest
bioinfo.icapture.ubc.ca
GeneticMap2GFF
getGoTerm
getGoTermAssociations
RetrieveGOFromKeywords
bioinfo.mpimp-golm.mpg.de
getTrypticPeptideSequenceByAGI
biomoby.renci.org
AntiGenic
BackTranAmbig
BackTranSeq
Banana
Biosed
Blast
Btwisted
Cai
Chaos
Charge
Checktrans
Chips
Clustalw
Codcmp
CompSeq
Cons
Consense
CPGPlot
CPGReport
Cusp
DeGapSeq
DescSeq
DiffSeq
DNAComp
DNADist
DNAPars
DNAPenny
DotMatcher
DotPath
Dottup
Drawgram
Drawtree
DReg
EInverted
Emowse
EQuickTandem
Est2Genome
ETandem
ExtractBlastReportSequences
ExtractFeat
ExtractSeq
Fitch
Freak
FuzzNuc
FuzzPro
FuzzTran
Garnier
Geecee
GetOrf
HelixTurnHelix
Iep
InfoAlign
IsNucleotideSequence
IsoChore
Kitsch
Listor
LookupSequence
MakeNucSeq
MakeProtSeq
MarScan
MaskFeat
Matcher
MegaMerger
Merger
MSBAR
Needle
Neighbor
NewCPGReport
NewCPGSeek
NotSeq
Octanol
OddComp
Palindrome
PatMatDB
PatMatMotifs
PepCoil
PepInfo
PepNet
PepStats
PepWheel
PepWindow
PepWindowAll
PlotCon
PlotOrf
PolyDot
PrettyPlot
PrettySeq
ProtDist
ProtPars
Recoder
RegisterAminoAcidSequence
RegisterNucleotideSequence
RegisterSequence
RevSeq
SeqMatchAll
SeqRetSplit
ShowAlign
ShowFeat
ShowOrf
ShowSeq
SigCleave
Splitter
Stretcher
SuperMatcher
Syco
TFScan
TranSeq
TrimEST
TrimSeq
Union
Water
Wobble
WordCount
WordMatch
bioserv.rpbs.jussieu.fr
ASA
ASAfromPDBid
Automat
BasicBuilder
Clustalw
CysPred
ExtractTurn
HBonds
HCA
Jnet
Mead_PKa
Mead_Pot
NetAsa
PredAcc
PSea
psiBlast
psiPred
Stride
Substitution
bioweb.pasteur.fr
Melting
ccgb.umn.edu
GI2ScientificName
MtKeyword
ccrc.uga.edu
ccrctest
cshl.edu
getArabidoposisAMIRNA
heaven.mshri.on.ca
GridService
imb.uq.edu.au
IMB_Get_MaximallyRepresentativeCluster
inblosam.com
extractGeneProteinNames
itdinges.mine.nu
Echo
helloWorld
llama.med.harvard.edu
CCSBHI1
CorrelatedCoexpression
GavinSpoke
Giot
Harbison
Ito2001
Johnson
LCI
LeeTF
Phosphorylome
Shyamsundar
Stelzl
Su
Tong2004
Uetz
Zhang
metnetdb.org
getMetNetComments
getMetNetPathways
migale.jouy.inra.fr
Water
mips.gsf.de
BlastFastaVsArabiProteincoding
BlastRawSeqVsArabiContigs
BlastRawSeqVsArabiProteincoding
getCosBBHForGene
MIPSBlast
MIPSBlastBetterE13
MIPSBlastXML
MIPSBlastXMLClickableImage
mncn.csic.es
getCoordinatesOfTaxon
moby.ucalgary.ca
ABIChromatogramToDNASequence
ReverseComplementSequence
TrimSequenceEndsOfAmbiguities
TrimSequencePolyATail
TrimSequenceVector
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