[MOBY-dev] Error while loading Moby into Taverna

[Andreas Groscurth]

works fine... thanks

On Monday 14 January 2008 16:11, Edward Kawas wrote:
> If you try now, it should work.
>
> Before trying, make sure to delete the .taverna-1.7.0/moby-cache/ directory
> first though.
>
> Let me know if you still encounter problems.
>
> Eddie
>
> -----Original Message-----
> From: moby-dev-bounces at lists.open-bio.org
> [mailto:moby-dev-bounces at lists.open-bio.org] On Behalf Of Stian Soiland
> Sent: January-14-08 6:07 AM
> To: tmo at ebi.ac.uk; Core developer announcements
> Subject: Re: [MOBY-dev] Error while loading Moby into Taverna
>
> On Jan 14, 2008 1:54 PM, Tom Oinn <meredith at cantab.net> wrote:
> > Sounds like a problem with the moby code that builds the object tree?
> > It's a bit hard for me to debug seeing as this is code written by the
> > moby guys... Looks like it's done when loading the default scavengers,
> > so maybe the scavenger you've got set is wrong or out of date?
>
> No, it's something changed in the data.. the line that fails with a
> NullPointerException is:
>
> 			fillSubTree(root,
> hashmap.get("Object").getChildren(), hashmap,
> 					REGISTRY_URL);
>
> by debugging and inspecting I find that the keys are more like
> http://moby.ucalgary.ca/RESOURCES/MOBY-S/Objects/Object - so that if I
> replace the above line to use that it works, except that the scavenger
> tree below "Object" will now be with full URLs such as
> http://moby.ucalgary.ca/RESOURCES/MOBY-S/Objects/AlignedSequences
>
> This seems to be correct corresponding to
> http58.47.47moby46ucalgary46ca47moby47MOBY45Central46pl/datatype_rdf/DATATY
>P ES.rdf
> in my moby-cache directory.

-- 
Andreas Groscurth
Bioinformatics Developer
Max Planck Institute for Plant Breeding Research
Carl-von-Linné-Weg 10
50829 Cologne
Germany
E-mail:    groscurt at mpiz-koeln.mpg.de
Phone:    +49(0)221-5062-449