[MOBY-dev] BUG in MobyRequest

[Paul Gordon]

Hi Andreas,

I'll check it out.  That sounds a bit strange.  Are you using the 
synchronous or asynchronous mode for invokeService()?  Can you send me 
youe exact code/input?

Andreas Groscurth wrote:
> Hi,
>
> I guess I found a bug in the MobyRequest system....
>
> I want to call the service ID2Taxonomy from our institute more than 
> once with several inputs. Therefore i wrote the following program, 
> which works fine.
> But if I change e.g. the second identifier (NP_080073.1) to 
> AC144389_35.2, which does not return a result for the webservice, then 
> NO result is returned at all.
> So, if apparently an input does not return a result, none (or some) 
> also do not return a result, although they should.
>
> Basically there are different results depending at which position the 
> identifier with no result appears.
>
> 1. AC144389_35.2 is at first position - the other return a result... 
> (so thats ok)
> 2. AC144389_35.2 is at second position - no input returns any result :-(
> 3. AC144389_35.2 is at third position - only the second returns a 
> result :-(
>
> and its getting even more confusing... if i use the same string for 
> the job identifier as for the mobyobject identifier (e.g. in both 
> cases NP_510335.2), then no result is returned. As soon as i changed 
> the job identifier to anything different than NP_510335.2 - it works 
> again and I get back a result.
>
> Did i do anything wrong or is this a bug ?
>
> Thanks and cheers
> Andreas
>
>    public static void main( String[] args ) throws Exception {
>     Central central = new CentralDigestCachedImpl();
>        MobyRequest mobyRequest = new MobyRequest( central );
>        MobyDataObject dataObject1 = new MobyDataObject( "", 
> "NP_510335.2" );
>        MobyDataObject dataObject2 = new MobyDataObject( "", 
> "NP_080073.1" );
>        MobyDataObject dataObject3 = new MobyDataObject( "", 
> "NP_491931.1" );
>
>        MobyContentInstance instance = new MobyContentInstance();
>        MobyDataJob job = new MobyDataJob();
>        job.put( "obj1", dataObject1 );
>        instance.put( "obj1", job );
>
>        job = new MobyDataJob();
>        job.put( "obj2", dataObject2 );         instance.put( "obj2", 
> job );
>
>        job = new MobyDataJob();
>     job.put( "obj3", dataObject3 );
>     instance.put( "obj3", job );
>
>        mobyRequest.setInput( instance );
>
>        MobyService mobyservice = new MobyService();
>        mobyservice.setName( "ID2Taxonomy" );
>        mobyservice = central.findService( mobyservice )[ 0 ];
>        mobyRequest.setService( mobyservice );
>
>        instance = mobyRequest.invokeService();       
>        for ( String string : instance.keySet() ) {
>            System.out.println( "key " + string );
>            MobyDataJob dataJob = instance.get( string );
>            MobyDataInstance[] instances = dataJob.getPrimaryData();
>            for ( MobyDataInstance mobyDataInstance : instances ) {
>                MobyDataComposite composite = ( MobyDataComposite ) 
> mobyDataInstance;
>                System.out.println( "DATA " + composite.getId() + " - " 
> + composite.get( "Name" ) );
>            }
>        }
>    }
>
>