[MOBY-dev] Problems installing MOBY-Client libraries

Edward Kawas edward.kawas at gmail.com
Tue Apr 15 13:38:48 UTC 2008 

Hi Jose Manuel,

Sorry for not posting this on the list or somewhere for others to read, but
to install the MOBY-Client libraries, you have to options:

Download the module from cpan: http://search.cpan.org/dist/MOBY-Client

Or build it from the cvs (instructions taken from moby-live/Perl/README):

    To install just the *client* Perl MOBY libraries on your system, 
    type the following (from within MOBY-Client/):

       perl populate_libs.pl
       perl Makefile.PL
       make
       make test
       make install

    The script populate_libs.pl goes through the MOBY-Server directory
    and extracts those modules required just for Client side MOBY.

If you install from the cvs, then make sure *not* to the commit
MOBY-Client/lib directory.

So unfortunately our computers are not able to determine if some modules are
installed or not and WSRF is one of those modules. If you are sure that your
computer has the module, then just tell the makefile not to install
dependencies.

Hope this helps,

Eddie

-----Original Message-----
From: moby-dev-bounces at lists.open-bio.org
[mailto:moby-dev-bounces at lists.open-bio.org] On Behalf Of Jose Manuel
rodriguez
Sent: April-15-08 1:51 AM
To: moby-dev at lists.open-bio.org; moby-dev-bounces at lists.open-bio.org
Subject: [MOBY-dev] Problems installing MOBY-Client libraries

Hello,

I have downloaded the latest code using anonymous CVS and I am trying to 
install the MOBY-Client libraries but I have found some bugs:
    1) The version 0.8.2.2 of WSRF::Lite is already installed in the 
machine but MOBY does not found.
    2) (and most important) The installed package says me "the following 
files are missing in your kit" (lib/MOBY/...).

Below I have attached the piece of messages.

Best Regards,
José Manuel.


--------------------------

root at terril:/opt/moby-live/Perl/MOBY-Client# perl Makefile.PL
*** Module::AutoInstall version 1.03
*** Checking for Perl dependencies...
[Core Features]
- Test::More               ...loaded. (0.78)
- Test::Pod                ...loaded. (1.26)
- SOAP::Lite               ...loaded. (0.67 >= 0.60)
- XML::LibXML              ...loaded. (1.66)
- LWP::UserAgent           ...loaded. (2.033)
- CGI                      ...loaded. (3.15)
- HTTP::Request::Common    ...loaded. (1.26)
- URI::Escape              ...loaded. (3.28)
- RDF::Core                ...loaded. (0.51 >= 0.51)
- HTML::Entities           ...loaded. (1.35)
- WSRF::Lite               ...missing. (would need 0.8.2.2)
- XML::DOM                 ...loaded. (1.44)
- DateTime::Format::Epoch  ...loaded. (0.10)
- DateTime::Format::W3CDTF ...loaded. (0.04)
- HTTP::Daemon             ...loaded. (1.36)
- HTTP::Daemon::SSL        ...loaded. (1.02)
- MIME::Base64             ...loaded. (3.07)
- Digest::SHA1             ...loaded. (2.11)
- Crypt::OpenSSL::RSA      ...loaded. (0.25)
- XML::CanonicalizeXML     ...loaded. (0.03 >= 0.02)
- Sys::Hostname::Long      ...loaded. (1.4)
- Crypt::OpenSSL::X509     ...loaded. (0.6)
==> Auto-install the 1 mandatory module(s) from CPAN? [y]
CPAN: File::HomeDir loaded ok (v0.56)
*** Dependencies will be installed the next time you type 'make'.
*** Module::AutoInstall configuration finished.
Checking if your kit is complete...
Warning: the following files are missing in your kit:
       lib/MOBY/Async/LSAE.pm
       lib/MOBY/Async/Service.pm
       lib/MOBY/Async/SimpleServer.pm
       lib/MOBY/Async/WSRF.pm
       lib/MOBY/Client/Central.pm
       lib/MOBY/Client/CollectionArticle.pm
       lib/MOBY/Client/Exception/MobyException.pm
       lib/MOBY/Client/Exception/MobyExceptionCodes.pm
       lib/MOBY/Client/OntologyServer.pm
       lib/MOBY/Client/Registration.pm
       lib/MOBY/Client/SecondaryArticle.pm
       lib/MOBY/Client/Service.pm
       lib/MOBY/Client/ServiceInstance.pm
       lib/MOBY/Client/SimpleArticle.pm
       lib/MOBY/Client/SimpleInput.pm
       lib/MOBY/CommonSubs.pm
       lib/MOBY/CrossReference.pm
       lib/MOBY/MobyXMLConstants.pm
       lib/MOBY/RDF/Parsers/DatatypeParser.pm
       lib/MOBY/RDF/Parsers/NamespaceParser.pm
       lib/MOBY/RDF/Parsers/ServiceTypeParser.pm
       lib/MOBY/RDF/Predicates/DC_PROTEGE.pm
       lib/MOBY/RDF/Predicates/FETA.pm
       lib/MOBY/RDF/Predicates/MOBY_PREDICATES.pm
       lib/MOBY/RDF/Predicates/OMG_LSID.pm
       lib/MOBY/RDF/Predicates/OWL.pm
       lib/MOBY/RDF/Predicates/RDF.pm
       lib/MOBY/RDF/Predicates/RDFS.pm
       lib/MOBY/RDF/Utils.pm
Please inform the author.
Warning: prerequisite WSRF::Lite 0.8.2.2 not found. We have.
Writing Makefile for MOBY::Client

-------------------------------


-- 
José Manuel Rodríguez Carrasco            e-mail: jmrodriguez at cnio.es
Tlfn:    (+34) 91 732 80 00 ext: 2256     Fax:    (+34) 91 224 69 76
Bioinformatic Unit
Spanish National Cancer Center (CNIO) http://www.cnio.es
Zip Code: 28029
Address: C/. Melchor Fernandez Almagro nº 3, Madrid (Spain) 


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