[MOBY-dev] Problems with Biomoby Ant Script

[Andreas Groscurth]

Hi Michael,

first of all - please check the page for updates ;-) it has changed so 
the vmargs parameter are actually not needed to run Eclipse and jmoby 
correctly.

Your error seems simple -

http://moby.ucalgary.ca/moby/MOBY-Central.pl

was not reachable at the time you tried it ... I recommend just to run 
the task again - it should work then (at least i can access 
http://moby.ucalgary.ca/moby/MOBY-Central.pl currently)

best
andreas

Michael Gerlich wrote:
> Hi there,
>
> I'am still having problems getting JMoby to work in Eclipse.
> First of all, I run Eclipse on OpenSuse 10.3 with updated Java JDK 1.5 Update 15.
> As written here (http://bioinfo.mpiz-koeln.mpg.de/araws/documentation/help/jmoby-step-by-step/writing-biomoby-web-services/known-errors-and-problems)
>  Eclipse is started from console with parameter -vmargs and -Djava.home=/usr/lib/jvm/java-1.5.0-sun-1.5.0_update15/jre/.
> Though I'am connected through a proxy, I need to specify proxy settings in net.properties with http_proxy tags (system variables set doesn't seem to affect eclipse or java in any way).
>
> Downloading from CVS works fine from Eclipse (even without proxy settings in net.properties), but as soon as I want to call ant scripts (like install), the proxy settings have to be specified or a timeout arises.
>
> When running install ant task, after some time, the following shows up:
>
> [Local cache] The jMoby is now creating a local cache. Depending
> [Local cache] on the network speed, it may take several minutes
> [Local cache] (usually it should be done within about a minute).
> [Local cache] 
> [Local cache] [You can check the progress in the jMoby.log file.]
> [Local cache]   
> [Local cache] ===ERROR===
> [Local cache] ===ERROR===
> [Local cache] Fault details:
> [Local cache] Fault string: java.net.ConnectException: Die Wartezeit für die Verbindung ist abgelaufen
> [Local cache] Fault code:   {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
> [Local cache] Fault actor:  null
> [Local cache] When calling:
> [Local cache]     http://moby.ucalgary.ca/moby/MOBY-Central.pl
> [Local cache] ===========
> [Local cache] ===========
> Retrieving namespaces...    
>
> BUILD FAILED
> /home/micge/workspace/moby2/xmls/install.xml:99: Java returned: 1
>
> Total time: 4 minutes 49 seconds
>
> Everything before building the cache runs fine, but there is a timeout specified.
> I don't know what or where to change a thing because the error is caused by the proxy settings (so I guess).
> Anyone who knows an answer to this?
>
> Regards,
> Michael
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