[MOBY-dev] [moby] BioMOBY at the Oscars

[Twigger Simon]

The website is a blog (and quite a few people are subscribed to it)  
so you could always post these types of things on there as blog  
postings that will appear on the front page as well as burying them  
in the documentation (which is a better long term place for the info  
but is far less likely to be seen).

Simon.

--

Simon N. Twigger, Ph.D.
Assistant Professor, Department of Physiology
Medical College of Wisconsin
8701 Watertown Plank Road,
Milwaukee, WI, USA
tel: 414-456-8802
fax: 414-456-6595
AIM/iChat: simontatmcw


On Mar 8, 2006, at 11:58 AM, Edward Kawas wrote:

> I did (actually martin did):
> http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Java/docs/taverna/ 
> guide/in
> dex.html
>
> Eddie
>
>> -----Original Message-----
>> From: moby-dev-bounces at biomoby.org
>> [mailto:moby-dev-bounces at biomoby.org] On Behalf Of Mark Wilkinson
>> Sent: Wednesday, March 08, 2006 9:54 AM
>> To: Core developer announcements
>> Subject: Re: [MOBY-dev] [moby] BioMOBY at the Oscars
>>
>> Eddie, THIS is why I keep telling you to **put these things up on the
>> website!** :-)
>>
>> M
>>
>>
>>
>> On Wed, 2006-03-08 at 09:50 -0800, Mark Wilkinson wrote:
>>> You should talk to Eddie - I think he already has a taverna plugin
>>> that does that...
>>>
>>> M
>>>
>>>
>>>
>>> On Wed, 2006-03-08 at 16:51 +0000, Stian Soiland wrote:
>>>> On 8. mar. 2006, at 16:25, Mark Wilkinson wrote:
>>>>
>>>>> urn:lsid:biomoby.org:serviceinstance:org.inab.upc,runFasty:
>>>>> 2006-03-04T08-50-58Z
>>>>
>>>> This seems like an OK example, but maybe not a good match
>> for our task.
>>>>
>>>>> does that help?  What, specifically, are you looking for in the
>>>>> RDF?  A comprehensive use of all of the predicates, or a "gold
>>>>> standard" for what we consider to be a well-documented (i.e.
>>>>> described) service?
>>>>
>>>> More specifically we are looking for good examples of semantic
>>>> descriptions that we can use for Taverna while developing
>> semantic
>>>> linking/browsing/searching. In particular, descriptions of inputs
>>>> and outputs that are a bit more specific than "Object",
>> so that we
>>>> can build GUI elements in Taverna for use cases like this
>> rough description:
>>>>
>>>> a) Add a BioMoby processor into the Taverna workflow
>>>> b) Click on the process, find that the input is a string
>> described
>>>> as a "GCP_Phenotype"
>>>> c) Browse a list of BioMoby services that can provide the output
>>>> type "GCP_Phenotype"
>>>> d) Add one of the services to the workflow and connect it
>>>>
>>>> Of course, limiting the search by "performs task
>> NCBI_Blast" is also
>>>> nice.
>>>>
>>>>
>>>> So a good example would be one (or a few related)
>> services that has
>>>> this kind of information specified and that actually works. :-)
>>>>
>> -- 
>>
>> --
>> Mark Wilkinson
>> Asst. Professor, Dept. of Medical Genetics University of
>> British Columbia PI in Bioinformatics, iCAPTURE Centre St.
>> Paul's Hospital, Rm. 166, 1081 Burrard St.
>> Vancouver, BC, V6Z 1Y6
>> tel: 604 682 2344 x62129
>> fax: 604 806 9274
>>
>> "For most of this century we have viewed communications as a conduit,
>>        a pipe between physical locations on the planet.
>> What's happened now is that the conduit has become so big and
>> interesting
>>       that communication has become more than a conduit,
>>        it has become a destination in its own right..."
>>
>>                 Paul Saffo - Director, Institute for the Future
>>
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>
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