[MOBY-dev] Quick poll
Paul Gordon
gordonp at ucalgary.ca
Tue Apr 11 14:09:36 UTC 2006
It is in the Object ontology, but only the last two lines I guess, which
look like:
<owl:AnnotationProperty
rdf:about="http://www.w3.org/2000/01/rdf-schema#comment">
In the file http://bioinfo.icapture.ubc.ca:8090/RESOURCES/MOBY-S/Objects
Which causes the following error (so the problem might actually be that
org.biomoby.shared.extended.DataTypeParser should ignore this field but
doesn't?):
Cannot parse MOBY Object Ontology: org.biomoby.shared.MobyException:
Expected an LSID as a URI, instead got
http://www.w3.org/2000/01/rdf-schema#comment 200 : LSID must be of the
form: urn:lsid:<AuthorityID>:<NamespaceID>:<ObjectID>:[RevisionID], got:
urn:lsid: not found: [http://www.w3.org/2000/01/rdf-schema#comment]
org.biomoby.shared.MobyException: Expected an LSID as a URI, instead got
http://www.w3.org/2000/01/rdf-schema#comment 200 : LSID must be of the
form: urn:lsid:<AuthorityID>:<NamespaceID>:<ObjectID>:[RevisionID], got:
urn:lsid: not found: [http://www.w3.org/2000/01/rdf-schema#comment]
at
org.biomoby.shared.extended.DataTypeParser.getMobyDataTypesFromRDF(DataTypeParser.java:173)
> Hi Paul,
>
> Can you send us a copy of what you are seeing, and the URL that you
> retrieved it from? From our perspective, it is still LSID-based...
>
> ??
>
> M
>
>
> On Mon, 10 Apr 2006 16:20:36 -0700, Paul Gordon <gordonp at ucalgary.ca>
> wrote:
>
>
>> Umm.. the test server has reverted to
>> http://www.w3.org/2000/01/rdf-schema#label type RDF instead of LSID
>> based. Is this intentional? It breaks all my code :-(
>>
>>> Hi,
>>>
>>> The agent isnt on yet (on mobycentral that is, it is running on the test
>>> registry). We want to make sure that the RDF is 100% correct before the
>>> agent is
>>> deployed.
>>>
>>> Thanks,
>>>
>>> Eddie
>>>
>>>
>>>
>>>> -----Original Message-----
>>>> From: moby-dev-bounces at lists.open-bio.org
>>>> [mailto:moby-dev-bounces at lists.open-bio.org] On Behalf Of
>>>> Arnaud Kerhornou
>>>> Sent: Friday, April 07, 2006 2:04 AM
>>>> To: Core developer announcements
>>>> Subject: Re: [MOBY-dev] Quick poll
>>>>
>>>> Hi Eddie,
>>>>
>>>> I have updated my services, and they all have a signature
>>>> URL. I have a RDF document that includes in it all my
>>>> services in there, http://genome.imim.es/webservices/RDFs/services.rdf
>>>>
>>>> i don't use the RDF, i guess in future i could use it for
>>>> parameters and input objects validation - this way validatino
>>>> could be done on the fly generically.
>>>>
>>>> Also, quick question, is the agent on ? Is it going to check
>>>> the RDF document on a regular basis, and being able to update
>>>> the central registry if i modify the specs of my services?
>>>>
>>>> regards,
>>>> Arnaud
>>>>
>>>> Edward Kawas wrote:
>>>>
>>>>
>>>>> Hi,
>>>>>
>>>>> Just out of curiosity, who is using the RDFs that mobycentral is
>>>>> currently generating. If you are using them, what tasks are
>>>>>
>>>>>
>>>> you using them for.
>>>>
>>>>
>>>>> I ask, because the RDF that is generated by mobycentral is
>>>>>
>>>>>
>>>> different
>>>>
>>>>
>>>>> than the one that is generated by the test machine. The difference
>>>>> lies on the fact that mobycentral identifies resources
>>>>>
>>>>>
>>>> based on URIs,
>>>>
>>>>
>>>>> while the test registry uses LSIDs. There are some other
>>>>>
>>>>>
>>>> changes, but
>>>>
>>>>
>>>>> mainly additions (for instance, object ontology rdf now has more
>>>>> information in it, like the authority of the creator, the
>>>>>
>>>>>
>>>> creators email address, etc).
>>>>
>>>>
>>>>> We are hoping to deploy the new RDF onto mobycentral very
>>>>>
>>>>>
>>>> soon, and I
>>>>
>>>>
>>>>> just want to get a head count of who it is that will yell (beat up,
>>>>> etc) at me ;-)
>>>>>
>>>>> Thanks,
>>>>>
>>>>> Eddie
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
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>>>>
>>>>
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>
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>
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