[MOBY-dev] Taverna plugin bug?: elements missing in BioMOBYobjects

[Pieter Neerincx]

Hi Eddie,

Sorry, I cheered premature :(. For one of my services I use the  
articleName attribute of two String objects to know which one  
contains which data. Hence I have something like:

<SomeObject id="" namespace="some.ns">
     <String id="" namespace="another.ns" articleName="this.one">
         Bla bla
     </String>
     <String id="" namespace="another.ns" articleName="the.other.one">
         Alb alb
     </String>
<SomeObject>

The Object my service receives in Taverna lacks the articleName  
attributes for it's String childs :(. Hence it becomes this:

<SomeObject id="" namespace="some.ns">
     <String id="" namespace="another.ns">
         Bla bla
     </String>
     <String id="" namespace="another.ns">
         Alb alb
     </String>
<SomeObject>

Looks like the fix introduced a new bug as well...

Pieter

On  07Oct2005, at 11:30, Pieter Neerincx wrote:

> Hi Eddie,
>
> On 5-Oct-2005, at 2:52 AM, Edward Kawas wrote:
>
>
>> Hi Pieter!
>>
>> I tracked down the bug and I fixed it (*fingers crossed*).
>>
>> I am placing 2 jar files at the following links that need to
>> replace the ones in your /taverna-workbench-1.3/lib/
>> directory:
>> http://bioinfo.icapture.ubc.ca/ekawas/jars/taverna-1.3.jar
>> http://bioinfo.icapture.ubc.ca/ekawas/jars/jmoby.jar
>>
>> Be sure to backup the 2 files you are about to replace, just
>> in case!
>>
>> Then try out your workflows and let me know what happens.
>>
>
> I did some simple tests with the objects that failed previously and  
> so far so good :)
>
> Thanks for the quick fix!
>
>
>>
>> Also, if all is well, do you think that you could send me
>> one of those workflows so I can use it as an example?
>>
>
> After a lot of trail and error playing with a local central I think  
> it's about time I register my services and objects at the central  
> Central as well. Will do so once the central Central databases are  
> migrated to the new API...
>
> Cheers,
>
> Pi
>
>
>> Thanks a lot,
>>
>> Eddie
>>