[MOBY-dev] Taverna plugin bug?: elements missing in BioMOBYobjects

[Edward Kawas]

Hi Pieter,

I was wondering if you had a workflow that you use to build
the object and run it with a Moby service. If you have one,
do you think that you could email it to me?

Thanks,

Eddie

> -----Original Message-----
> From: moby-dev-bounces at portal.open-bio.org [mailto:moby-
> dev-bounces at portal.open-bio.org] On Behalf Of Pieter
> Neerincx
> Sent: Tuesday, October 04, 2005 8:47 AM
> To: Core developer announcements
> Subject: Re: [MOBY-dev] Taverna plugin bug?: elements
> missing in BioMOBYobjects
> 
> Hi Eddie,
> 
> I found another interesting example. In this case I didn't
> loose any
> child elements, but they got appended to the wrong parent
> element ???
> 
> TropGENE_ACESSION
>      TropGENE_LOCUS
>          TropGENE_ALLELE
>          TropGENE_LINKAGE_GROUP
>              TropGENE_MAP_POSITION
> 
> If I use the object above I get as input for a service:
> 
> TropGENE_ACESSION
>      TropGENE_LOCUS
>          TropGENE_ALLELE
>              TropGENE_MAP_POSITION
>          TropGENE_LINKAGE_GROUP
> 
> Hence, the TropGENE_MAP_POSITION is appended to the wrong
> child. The
> intermediate output of the processor that creates
> TropGENE_LINKAGE_GROUP seems to be fine, but when
> TropGENE_LINKAGE_GROUP is appended to TropGENE_LOCUS, the
> TropGENE_MAP_POSITION element jumps from the
> TropGENE_LINKAGE_GROUP
> to the TropGENE_ALLELE element...
> 
> Regards,
> 
> Pieter
> 
> 
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