[moby] [MOBY-dev] Registrying a moby service that takes aninput collection

[Edward Kawas]

Hi,

The problem is on the side of the service provider:

They advertise a collection as the output, yet this is the
output:


<?xml version="1.0" encoding="UTF-8"?>
    <moby:MOBY xmlns:moby="http://www.biomoby.org/moby">
      <moby:mobyContent>
        <moby:mobyData moby:queryID="a1">
          <moby:Simple>
            <moby:CommentedDNASequence namespace="ENSEMBL"
id="ENSG00000079459">
              <Integer xmlns="http://www.biomoby.org/moby"
namespace="" id="" articleName="Length">
2000
              </Integer>
              <String xmlns="http://www.biomoby.org/moby"
namespace="" id="" articleName="SequenceString">
TGAATAAAGTTTGCTTCTAAGAGAAGTTACTATTTATTCCTAATTAAATGGGGAGGAAAG
TCTTTGAAGAGGAACCTCTACTTTACTTTTTATACCGTCATGGCTGGAAACTAAGTTTTT
AAGATTTTTCTGGGGTTCCCTTGGCCGAGGTGGGGAGTGGGAGGGCTGTCCAGTGGTAGG
GACTTAGGATTTTTAGTTTACAGTAGTAGGGGAAACACTCTGTAATCTAATACATAAGTA
AATGATGTATTAGAATATGGTAAATATAGGCAAGTAGACCCCCACTGGGATTAGCAGTGG
TGGAAATGTGAGAGAGGGCAAACAGGTGGGTCTAGATGAGGTGTGAGCAGACTCGAGGGG
CACAGGAGTTAGTCAAGCCAGTATCTGGGGGATAGTGCAGGAATAGTGAACAGCTAGACA
AAAAGTCCTAGGGCCAGAGAAAGCAAAAGCATAAGAGATGGAGGCCAGAGAGGTAATCTG
GGTGGAAGGCTGCAGCCTCTCAGGATCCCTATAGGTGCTTTGGCTTTTGTTGGAGAGACA
CTGAACAGCTTTGGGCAGTGAACGTACCTGACAGGTTTCCTGTTTGTTTTTGAGATGAAG
TCTCGCTCTTGTCCCCCAGGCTGGAGTGCAATAGCGCGATCTCAGCTCACTGCAACCTCT
GCCTCCTGTGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAGGTAGCTGGGATTATAGGCG
CCTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGCAGTTTCAGCATGTTG
GCCAGGCTGGTCTTGAACTCCAGACCTCAGGTGATCCGCCCGCCTTGGCCTCCCAAAGTG
CTGGGATTACAGGCATGAGCCACCGCGCTCGGCTAGACCTGACAGGTTTTAAAAGGATTA
CTGGTTGCTGTGTTAAAACAGACTGCAGGATGGCTTAGGTAGCCAGTAGGTTTTTTTTTT
TTTTTGGAGACGTAGTCTTGCTCTGTTGGCCTGGCTGGAGTGCAGCGGTGTCATCTTGGC
TCACTGCAAACTCCGCTTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCGGAGTAGT
TGGGACTACAGGCGCCCACCACCACACTCGGCTTTTTTGTATTTTTAGTAGAGACGGGTT
TCACCATGTTGGCCAGGATGGTCTCGATCTCTTGACCTCGTGATCCACCCGCCTTGGCCT
CCCAAAGTGTTGCGATTACAGGCGTGAGCCACCACGCCTGGACGGGTAGCCAGTAGTTTC
TAGGGCTGGAGAGATCTAGGATGAGAGAAGTTTCCACATTCCTGTTACAGGCTCTCTAAG
GCTTCAGCTCCTTTTTCTAGGACTAAGCTGGATCTCAAGTAAACACTAGAGAGGGGGCAG
CTGAAGCTCCAGGAGTGTGTGGGGCTCCCTGGGGCTGGATGGCGGTGGCGGGCAGGCGAG
CTGGGCTGTGCTCGGGTGTGTTACAGTAAAGACGCCCAGCTTGGCGCTGGCCCGGCCTTT
TCACGGTTTTAGGCTCTACAGAGAGCGGCTGCAGAGCTCACCCGGCTGGCAGGAGCCACC
GAGGCCGGACACGTGGGCGACTTATTGACCAAGTGGGGAGGAAGCAGCCCCGCACTGCTC
TCCCGACTGCGGACCACCGTTGGGCTCCTGCGCATCCTAAGCCCCACCGCCTCACCTCCA
GTCCCCACAGCGTTCGCGCTCCCAGCCGGGGTAAGCGGAAGAAAACAAAGGCCCGGCTCC
ATCAGGGCACCAATCCCGCTCGTCGGCCTCTTTCTCGGCCTCCAATGAGCTTCTAGAGTG
TTATCACGCCAGTCTCCTTCCGCGACTGATTGGCCGGGGTCTTCCTAGTGTGAGCGGCCC
TGGCCAATCAGCGCCCGTCAGCCCACCCCACGAGGCCGCAGCTAGCCCCGCTGGCGGCCG
AGGCCGGTTGAAGTGGGCGGAGCGGCGGGCGGGGCGTCGCCGTACTAGGCCTGCCCCCTG
TCCGGCCAGCCCCTCGAAGC
              </String>
              <String xmlns="http://www.biomoby.org/moby"
namespace="" id="" articleName="Description">
2222:NCBI35:8:11695664:11697663:1
              </String>
            </moby:CommentedDNASequence>
          </moby:Simple>
        </moby:mobyData>
      </moby:mobyContent>
    </moby:MOBY>

Not a collection.

If you are the service provider, you must ensure that you
output what you state that you will.

Hope this helps,

Eddie

> -----Original Message-----
> From: moby-dev-bounces at portal.open-bio.org [mailto:moby-
> dev-bounces at portal.open-bio.org] On Behalf Of Mark
> Wilkinson
> Sent: Friday, November 04, 2005 8:06 AM
> To: Arnaud Kerhornou; Core developer announcements
> Subject: Re: [moby] [MOBY-dev] Registrying a moby service
> that takes aninput collection
> 
> I'll address the first part...
> 
> 
> 
> > <------------------------------------
> >
> > Does it mean the registration has failed ?
> 
> You need to check the return value of your registration
> attempt - a
> small XML object is returned to you that contans (among
> other things -
> see the API) a boolean 1/0 as to success or failure of
> your
> registration.
> 
> Your registration was successful (I just checked the
> database).  The
> client-side problem is a new one for me.  I'll try to
> duplicate it here
> later.
> 
> The Taverna problem I will leave to Eddie to answer
> (though I think I
> know what the answer is)
> 
> M
> 
> 
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