[MOBY-dev] SQL dump

Pieter Neerincx Pieter.Neerincx at wur.nl
Mon May 2 15:36:08 UTC 2005


Hi all,

I'm trying to get an SQL dump from the BioMOBY central. I tried  
MOBY::CLient::Central::DUMP() from the perl API and a raw SOAP call,  
but all I get is:

500 Internal Server Error.

With SOAP::Lite + 'trace' I also get:

...snip...
can't open mobycentral for dumping at  
/usr/lib/perl5/site_perl/5.8.5/MOBY/Central.pm line 2921, <IN> line 36.
...snip...

For the complete trace see below. Anyone got an idea what I'm missing  
here? Any feedback would be appreciated.

Cheers,

Pieter


--------------------------------------------------
SOAP::Lite trace:

MOBY Central Data Dump:
  SOAP::Transport::new: ()
  SOAP::Serializer::new: ()
  SOAP::Deserializer::new: ()
  SOAP::Parser::new: ()
  SOAP::Lite::new: ()
  SOAP::Transport::HTTP::Client::new: ()
  SOAP::Lite::call: ()
  SOAP::Serializer::envelope: ()
  SOAP::Serializer::envelope: DUMP
  SOAP::Data::new: ()
  SOAP::Data::new: ()
  SOAP::Data::new: ()
  SOAP::Data::new: ()
  SOAP::Transport::HTTP::Client::send_receive:  
HTTP::Request=HASH(0x8475a84)
  SOAP::Transport::HTTP::Client::send_receive: POST  
http://mobycentral.cbr.nrc.ca/cgi-bin/MOBY05/mobycentral.pl HTTP/1.1
  Accept: text/xml
  Accept: multipart/*
  Content-Length: 466
  Content-Type: text/xml; charset=utf-8
  SOAPAction: "http://mobycentral.cbr.nrc.ca/MOBY/Central#DUMP"

  <?xml version="1.0" encoding="UTF-8"?><SOAP-ENV:Envelope  
xmlns:xsi="http://www.w3.org/1999/XMLSchema-instance"  
xmlns:SOAP-ENC="http://schemas.xmlsoap.org/soap/encoding/"  
xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/"  
xmlns:xsd="http://www.w3.org/1999/XMLSchema"  
SOAP-ENV:encodingStyle="http://schemas.xmlsoap.org/soap/ 
encoding/"><SOAP-ENV:Body><namesp1:DUMP  
xmlns:namesp1="http://mobycentral.cbr.nrc.ca/MOBY/Central"/></SOAP-ENV: 
Body></SOAP-ENV:Envelope>
  SOAP::Transport::HTTP::Client::send_receive:  
HTTP::Response=HASH(0x8628038)
  SOAP::Transport::HTTP::Client::send_receive: HTTP/1.1 500 Internal  
Server Error
  Connection: close
  Date: Mon, 02 May 2005 15:16:45 GMT
  Server: Apache/2.0.53 (Unix) mod_perl/1.999.21 Perl/v5.8.5
  Content-Length: 600
  Content-Type: text/xml; charset=utf-8
  Client-Date: Mon, 02 May 2005 15:16:45 GMT
  Client-Peer: 198.166.4.225:80
  Client-Response-Num: 1
  SOAPServer: SOAP::Lite/Perl/0.60

  <?xml version="1.0" encoding="UTF-8"?><SOAP-ENV:Envelope  
xmlns:xsi="http://www.w3.org/1999/XMLSchema-instance"  
xmlns:SOAP-ENC="http://schemas.xmlsoap.org/soap/encoding/"  
xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/"  
xmlns:xsd="http://www.w3.org/1999/XMLSchema"  
SOAP-ENV:encodingStyle="http://schemas.xmlsoap.org/soap/ 
encoding/"><SOAP-ENV:Body><SOAP-ENV:Fault><faultcode>SOAP-ENV:Server</ 
faultcode><faultstring>can't open mobycentral for dumping at  
/usr/lib/perl5/site_perl/5.8.5/MOBY/Central.pm line 2921, <IN> line 36.
  </faultstring></SOAP-ENV:Fault></SOAP-ENV:Body></SOAP-ENV:Envelope>
  SOAP::Deserializer::deserialize: ()
  SOAP::Parser::decode: ()
  500 Internal Server Error at ./GetDumpRawSOAP.pl line 52
  SOAP::Lite::DESTROY: ()
  SOAP::Deserializer::DESTROY: ()
  SOAP::Serializer::DESTROY: ()
  SOAP::Data::DESTROY: ()
  SOAP::Data::DESTROY: ()
  SOAP::Data::DESTROY: ()
  SOAP::Data::DESTROY: ()
  SOAP::Transport::DESTROY: ()
  SOAP::Transport::HTTP::Client::DESTROY: ()
  SOAP::Parser::DESTROY: ()




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