[moby] [MOBY-dev] questions about gbrowse-moby

Wed Jan 12 17:05:24 UTC 2005

Hi Yan, 

I am trying to hit your service from here.  It seems to just "hang" and
not give any output at all (i assume we are talking about the
test_python_echo service?)

Is it possible that your soap daemon is not configured properly?

M

On Wed, 2005-01-12 at 00:57, ywong at infobiogen.fr wrote:
> I have almost solve the problem.
> 
> Last night, I setup a test_python_echo service on my webserver and trace
> the HTTP transactions.
> 
> The service returns a message in an object with namespace="Global_keyword"
> 
> As input, the service receives a
> 
> <body><![CDATA[<?xml version="1.0" ?>
> <moby:MOBY xmlns:moby="http://www.biomoby.org/moby">
>         <moby:mobyContent>
>                 <moby:mobyData moby:queryID="1">
>                         <moby:Simple>
>                                 <moby:Object moby:id="Hallo Welt"
> moby:namespace="Global_Keyword"/>
>                         </moby:Simple>
>                 </moby:mobyData>
>         </moby:mobyContent>
> </moby:MOBY>
> ]]></body>
> 
> As output I give him:
> 
> <body><![CDATA[<?xml version="1.0" ?>
> <moby:MOBY xmlns:moby="http://www.biomoby.org/moby">
>         <moby:mobyContent>
>                 <moby:mobyData moby:queryID="1">
>                         <moby:Simple>
>                                 <moby:Object moby:id="Hallo Welt"
> moby:namespace="Global_Keyword"/>
>                         </moby:Simple>
>                 </moby:mobyData>
>         </moby:mobyContent>
> </moby:MOBY>
> ]]></body>
> 
> this is the raw xml returned:
> '<?xml version="1.0" ?>\n<moby:MOBY
> xmlns:moby="http://www.biomoby.org/moby">\n\t<moby:mobyContent>\n\t\t<moby:mobyData
> moby:queryID="1">\n\t\t\t<moby:Simple>\n\t\t\t\t<moby:Object
> moby:id="Hallo Welt"
> moby:namespace="Global_Keyword"/>\n\t\t\t</moby:Simple>\n\t\t</moby:mobyData>\n\t</moby:mobyContent>\n</moby:MOBY>\n'
> 
> But still no success :(
> 
> I think I am going to look into the code of gbrowse-moby and make other
> test s to see what's wrong...
> 
> 
> 
> 
> 
> > Hi Yan!
> >
> >
> >> The question I have is What kind of SOAP messages does gbrowse_moby
> send
> >> to query services?
> >> Is there any source of gbrowse_moby?
> >
> > gbrowse_moby is part of the Gbrowse codebase, and you can get it by
> checking-out Gbrowse (gmod.sourceforge.net).  At the moment there is no
> way to install gbrowse_moby without installing the rest of gbrowse, but I
> do plan on adding a Makefile "switch" sometime soon...  What you should do
> is go through the Gbrowse Makefile/make process and then rather than doing
> the "make install" step, just look in the cgi-bin folder and you will find
> the "maked" gbrowse_moby source code.
> >
> > It looks like your problem is here:
> >
> > xmlns:moby="http://www.biomoby.org/moby"><moby:mobyContent><moby:mobyData
> >
> > You are not escaping the '<' before your mobyContent and mobyData
> tags...
> >
> > I think that is the problem (just by a quick eyeball analysis...)
> >
> > Let me know if that does not work and I'll investigate further.
> >
> > M
> >
> >
> >
> >> _______________________________________________
> >> MOBY-dev mailing list
> >> MOBY-dev at biomoby.org
> >> http://www.biomoby.org/mailman/listinfo/moby-dev
> > --
> > Mark Wilkinson
> > Assistant Professor (Bioinformatics)
> > Dept. Medical Genetics, UBC, Canada
> >
> > _______________________________________________
> > MOBY-dev mailing list
> > MOBY-dev at biomoby.org
> > http://www.biomoby.org/mailman/listinfo/moby-dev
> >
> 
> _______________________________________________
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-- 
Mark Wilkinson
Assistant Professor (Bioinformatics)
Dept. Medical Genetics, UBC, Canada