[MOBY-dev] Question on parser

[Sebastien Carrere]

The MOBY message that I wanted to parse was a 12 Megabyte one.
The web-service concerned is:

name: ImgaGetTigrXMLEntriesFromKeyword
uri: bioinfo.genopole-toulouse.prd.fr
input: String
Output(s): /Collection of /text-xml, as TIGRXML and /Collection of 
/IMGA_Accession, as IMGA_Accession

I think this is a little bit extreme, but it works fine now.

Sebastien

Chunyan Wang wrote:

> Hi,
> I changed TimeOut from default to 50000 in the Apache config to fix 
> timeout problem.
> How big was your XML file when you had problem?
> Cheers,
>
> Joyce
>
> Sebastien Carrere wrote:
>
>> Hi all,
>>
>> I got the same problem when I wanted to parse huge XML files.
>> That's why I have written a clone of CommonSub.pm using "xsltproc" to 
>> parse MOBY message.
>> Then the parsing time problem was removed.
>>
>> However, how do you fixed timeout problem ?
>>
>> Sebastien
>>
>> Chunyan Wang wrote:
>>
>>>
>>>
>>> Martin Senger wrote:
>>>
>>>>> Could anybody explain this "problem" to me? Thanks.
>>>>>
>>>>>   
>>>>
>>>>
>>>>
>>>>   What language are you using, what XML library in that language?
>>>>
>>> I am using Perl and XML::DOM. I am using 
>>> "genericServiceInputParser($data)" to parse the input sequence in my 
>>> service.
>>> By the way, I want to let you know I fixed timeout problem. Thanks 
>>> for your suggestion.
>>>
>>> Joyce
>>>
>>>>   Martin
>>>>
>>>>  
>>>>
>>>
>>> _______________________________________________
>>> MOBY-dev mailing list
>>> MOBY-dev at biomoby.org
>>> http://www.biomoby.org/mailman/listinfo/moby-dev
>>>
>>>
>>
>
>
> _______________________________________________
> MOBY-dev mailing list
> MOBY-dev at biomoby.org
> http://www.biomoby.org/mailman/listinfo/moby-dev
>
>

-- 
__________________________________________________________

Sebastien CARRERE                        LIPM (INRA-CNRS)
                      B.P.52627 -- 31326 CASTANET TOLOSAN
tel:(33) 5-61-28-53-29
fax:(33) 5-61-28-50-61