From 240832 at bigfoot.com Mon Dec 1 01:43:18 2003 From: 240832 at bigfoot.com (240832@bigfoot.com) Date: Sun Nov 30 17:46:21 2003 Subject: [MOBY-dev] =?iso-8859-1?q?=C2=F1=E5=EC=2C_=EA=F2=EE_=ED=F3=E6=E4?= =?iso-8859-1?q?=E0=E5=F2=F1=FF_=E2_=F3=EB=F3=F7=F8=E5=ED=E8=E8_=E6?= =?iso-8859-1?q?=E8=EB=E8=F9=ED=FB=F5_=F3=F1=EB=EE=E2=E8=E9________?= =?iso-8859-1?q?__________240832?= Message-ID: <200311302246.hAUMk7g0001644@portal.open-bio.org> An HTML attachment was scrubbed... URL: http://portal.open-bio.org/pipermail/moby-dev/attachments/20031201/a62f06b2/attachment.htm From 477zvbs at hotmail.it Mon Dec 1 05:10:46 2003 From: 477zvbs at hotmail.it (Serena Welsh) Date: Sun Nov 30 23:23:16 2003 Subject: [MOBY-dev] Reach for the ceiling without side effects Message-ID: <1-u6-9-u55i-1$39r6-v1p3$-1@309azc> oncology Moby-dev Want A Bigger Pen1s? Want A Bigger Pen1s? Gain Up to 3+ Full Inches In Length Increase Your Penis Width (Girth) By 20% Stop Premature Ejaculation! Produce Stronger, Rock Hard Erections A Larger, Harder Penis During Sex 100% Safe To Take, With NO Side Effects Fast Priority Shipping WorldWide Doctor Approved And Recommended No Pumps! No Surgery! No Exercises! 100% Money Back Guarantee Moby-dev Click Here http://www.lopez.com@www.buyy.biz/vp/?ang2003 Opt-Off http://www.becalm.com@www.buyy.biz/off.html zbouexrvsi guws z From 240849 at excite.com Mon Dec 1 22:54:00 2003 From: 240849 at excite.com (240849@excite.com) Date: Mon Dec 1 14:56:55 2003 Subject: [MOBY-dev] =?iso-8859-1?q?=CA=F3=F1=EE=F7=E5=EA_=EC=EE=F0=FF____?= =?iso-8859-1?q?_______240849?= Message-ID: <200312011956.hB1Juhg0007073@portal.open-bio.org> An HTML attachment was scrubbed... URL: http://portal.open-bio.org/pipermail/moby-dev/attachments/20031201/125d4d5d/attachment.htm From 240849 at delphi.com Mon Dec 1 22:53:40 2003 From: 240849 at delphi.com (240849@delphi.com) Date: Mon Dec 1 15:04:41 2003 Subject: [MOBY-dev] =?iso-8859-1?q?=EE=E1=F4=F1=F6=EE=F9=E5_=F0=EF=F4=EF?= =?iso-8859-1?q?=EC=EB=E9_=EF=F4_=2418/=ED__________240849?= Message-ID: <200312012004.hB1K4Ng0007095@portal.open-bio.org> An HTML attachment was scrubbed... URL: http://portal.open-bio.org/pipermail/moby-dev/attachments/20031201/ba98c6ae/attachment-0001.htm From markw at illuminae.com Mon Dec 1 20:18:20 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Mon Dec 1 20:24:50 2003 Subject: [MOBY-dev] Registering 'arbitrary' SOAP services in MOBY Central Message-ID: <1070327900.1710.189.camel@localhost.localdomain> Hi all, especially Martin, So, I think (touch wood) that MOBY Central should now be able to handle registration of non-MOBY SOAP services. Martin, since you have a couple of hundred services ready to register, perhaps you can help me debug this :-) The process is as follows: You use the MOBY Central "registerService" call exactly as usual, with the following caveats: 1) the is 'wsdl', not 'moby' 2) the block contains or blocks with exactly the same structure as those used for moby-type services, HOWEVER, you declare the contained and using LSID's (more specifically, non-MOBY LSID's; i.e. the LSID's you use MAY NOT begin with urn:lsid:biomoby.org:). I'm not sure if the block is meaningful in the context of non-MOBY services, but it is available regardless... we can discuss its usefulness next time we chat. 3) You DO NOT NEED to register your non-MOBY objectTypes or Namespaces in the MOBY ontologies, nor MOBY Central - just pass the LSID for your objectType/Namespace and MOBY Central will recognize that this refers to a non-MOBY ontology and simply register it in the registry without further interpretation/validation. 4) Discovery proceeds as usual, you simply search for input(s) or output(s) of the urn:lsid:* type, with Category 'wsdl', and call a GET on the that is returned to you to get the WSDL for the service. 5) You can register as many inputs/outputs as you wish for a given service. Interpretation of this is up to the client, I guess... 6) the part of the message should be the URL to a WSDL document describing your service (and *only* that service??? I think... since WSDL documents can describe more than one service... or does the serviceName tag sufficiently take care of that problem?) Martin, please give it a try when you have a minute and tell me what walls you hit w.r.t. interpretation of these instructions or bugs in the registry. I've tested simple things, but you have a clearer idea of what the registry needs to do than I do, so you will be a better spoiler for it. We have to decide how to handle services that have moby-input and non-moby output, or v.v., since MOBY has a specific message format, and other SOAP services do not.... hmmm... Cheers! Mark -- Mark Wilkinson Illuminae From senger at ebi.ac.uk Mon Dec 1 20:38:05 2003 From: senger at ebi.ac.uk (Martin Senger) Date: Mon Dec 1 20:44:23 2003 Subject: [MOBY-dev] Registering 'arbitrary' SOAP services in MOBY Central In-Reply-To: <1070327900.1710.189.camel@localhost.localdomain> Message-ID: Mark, That's a wonderfull development. I would love to be more active and test it at once. The problem is that I have less than one week before leaving for a long Xmas holiday, and I need to do a lot of things before I leave (including hopefully some jMoby stuff regarding the API to the Moby services). Still I will try to test your new changes, but if I don't please forgive me, it is not because of lack of enthusiasm... Cheers, Martin -- Martin Senger EMBL Outstation - Hinxton Senger@EBI.ac.uk European Bioinformatics Institute Phone: (+44) 1223 494636 Wellcome Trust Genome Campus (Switchboard: 494444) Hinxton Fax : (+44) 1223 494468 Cambridge CB10 1SD United Kingdom http://industry.ebi.ac.uk/~senger From senger at ebi.ac.uk Mon Dec 1 20:38:05 2003 From: senger at ebi.ac.uk (Martin Senger) Date: Mon Dec 1 20:44:27 2003 Subject: [MOBY-dev] Registering 'arbitrary' SOAP services in MOBY Central In-Reply-To: <1070327900.1710.189.camel@localhost.localdomain> Message-ID: Mark, That's a wonderfull development. I would love to be more active and test it at once. The problem is that I have less than one week before leaving for a long Xmas holiday, and I need to do a lot of things before I leave (including hopefully some jMoby stuff regarding the API to the Moby services). Still I will try to test your new changes, but if I don't please forgive me, it is not because of lack of enthusiasm... Cheers, Martin -- Martin Senger EMBL Outstation - Hinxton Senger@EBI.ac.uk European Bioinformatics Institute Phone: (+44) 1223 494636 Wellcome Trust Genome Campus (Switchboard: 494444) Hinxton Fax : (+44) 1223 494468 Cambridge CB10 1SD United Kingdom http://industry.ebi.ac.uk/~senger From markw at illuminae.com Mon Dec 1 20:50:29 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Mon Dec 1 20:56:59 2003 Subject: [MOBY] Re: [MOBY-dev] Registering 'arbitrary' SOAP services in MOBY Central In-Reply-To: References: Message-ID: <1070329829.1710.200.camel@localhost.localdomain> :-) I understand! Go and have a nice holiday!! It will still be there when you get home :-) Best wishes, Mark On Mon, 2003-12-01 at 19:38, Martin Senger wrote: > Mark, > That's a wonderfull development. I would love to be more active and > test it at once. The problem is that I have less than one week before > leaving for a long Xmas holiday, and I need to do a lot of things before I > leave (including hopefully some jMoby stuff regarding the API to the Moby > services). Still I will try to test your new changes, but if I don't > please forgive me, it is not because of lack of enthusiasm... > > Cheers, > Martin -- Mark Wilkinson Illuminae From 240869 at excite.com Tue Dec 2 22:35:45 2003 From: 240869 at excite.com (240869@excite.com) Date: Tue Dec 2 14:38:34 2003 Subject: [MOBY-dev] =?iso-8859-1?q?=D2=F3=F0=FB_=ED=E0_=CD=EE=E2=FB=E9_?= =?iso-8859-1?q?=E3=EE=E4_=E8_=D0=EE=E6=E4=E5=F1=F2=E2=E5=ED=F1=EA?= =?iso-8859-1?q?=E8=E5_=EA=E0=ED=E8=EA=F3=EB=FB_!!!______240869?= Message-ID: <200312021938.hB2JcGg0013619@portal.open-bio.org> An HTML attachment was scrubbed... URL: http://portal.open-bio.org/pipermail/moby-dev/attachments/20031202/7ba9794b/attachment.htm From 240869 at aol.com Tue Dec 2 22:43:10 2003 From: 240869 at aol.com (240869@aol.com) Date: Tue Dec 2 14:54:07 2003 Subject: [MOBY-dev] =?iso-8859-1?q?=CD=CE=C2=DB=C9_=C3=CE=C4_=C8_=D0=CE?= =?iso-8859-1?q?=C6=C4=C5=D1=D2=C2=CE_=C2_=D2=C0=CB=CB=C8=CD=C5____?= =?iso-8859-1?q?240869?= Message-ID: <200312021954.hB2Jrvg0013706@portal.open-bio.org> An HTML attachment was scrubbed... URL: http://portal.open-bio.org/pipermail/moby-dev/attachments/20031202/0678c27d/attachment.htm From 054xizr at tim.it Wed Dec 3 01:16:22 2003 From: 054xizr at tim.it (Amado Conway) Date: Wed Dec 3 08:22:32 2003 Subject: [MOBY-dev] THis will not involve conception of a child Message-ID: Great Paris Hilton xxxvideo close-up shots, as well as the other exciting things! click here http://ns2.adweawen.biz/ph/index_mailer.html z ux lfrniz hcio y zhodivpm z wiuldsoahp drzfrcsycycvmbgcrb From webmaster at escorts.com Wed Dec 3 09:35:46 2003 From: webmaster at escorts.com (Chris) Date: Wed Dec 3 10:01:39 2003 Subject: [MOBY-dev] A message from escorts.com Message-ID: An HTML attachment was scrubbed... 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In-Reply-To: References: Message-ID: <1070930477.2588.4.camel@localhost.localdomain> Hi A short intro of myself.. I am Sebastian Ho from Bioinformatics Institute Singapore. I came to know about the moby project by chance and therefore joined the mailing list to monitor the activities. I noticed that there are a lot of junk mails (one example below) send out to the mailling list. Is anyone in the moby list doing anything about this? On Sun, 2003-12-07 at 07:18, Angelina Abel wrote: > NEW! ONLINE PHARMACY FOR YOUR PAIN RELIEF > > We offer: > > - Xanax > - Valium > - Somo > > and many more... > > Click Here! > http://www.yourremedy.biz/r117/htm/index.htm > > > See you soon!! > > > bye > http://www.yourremedy.biz/r/r.htm > > > > > > > > > > kk smqgim pq a > ryxkvswiwfynutv > omqz > > ______________________________________________________________________ > > _______________________________________________ > MOBY-dev mailing list > MOBY-dev@biomoby.org > http://www.biomoby.org/mailman/listinfo/moby-dev -- --------------------------------------------------------------------- Sebastian HO Email : sebastianh@bii.a-star.edu.sg Software Engineer Tel : +65 6478 8336 Software Engineering Group Fax : +65 6478 9050 Bioinformatics Institute http://www.bii.a-star.edu.sg 30 Biopolis Street, #07-01, Matrix Building, Singapore 138671 --------------------------------------------------------------------- From o130gxfzt at aol.com Fri Dec 12 19:38:30 2003 From: o130gxfzt at aol.com (Mark Boggs) Date: Fri Dec 12 20:42:58 2003 Subject: [MOBY-dev] La curiosita' non danneggia la salute Message-ID: <87h$9824hq48$hn33g23v$m$1$$-j5@t3kvgifsxx65> have you experienced seduction and salaciousness with virtual reality before? click here http://ns2.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php dmiq oar atyopyekpyudrp dulngwhlx ihra hhxigodmg bn wv From gke5mygikz at hotmail.com Sun Dec 14 11:21:17 2003 From: gke5mygikz at hotmail.com (Sybil Sparks) Date: Sun Dec 14 15:26:39 2003 Subject: [MOBY-dev] visual posh material which stimulates men's organs Message-ID: <6r4s708f281zwqm@bbn.bil> Hilton's Ex-Boyfriend Sues Over Sex Tape Video entrepreneur Rick Solomon, the man seen having sex with Paris Hilton on a home videotape that has surfaced on the Internet, filed a $10 million slander lawsuit Wednesday in Los Angeles Superior Court against the 22-year-old socialite, her parents and her publicist, Siri Garber, claiming they have sought to portray him as a criminal, The Hiltons have threatened to sue anyone who releases the tape, which was made in 2001 when Paris Hilton was 19 and before Solomon, then 30, married actress Shannen Doherty. if you want to see the video click on the link below click here http://ns.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php e er eubqy From eqmqso2s at aol.com Wed Dec 17 12:11:39 2003 From: eqmqso2s at aol.com (Marsha Nelson) Date: Wed Dec 17 21:15:56 2003 Subject: [MOBY-dev] it's a clean,safe and smut cuffo environment to meet Message-ID: * Our huge data base of woman all over the country has grown! * We have almost 1 million members to onlinecheatingwives.com * Just do a profile search!! * We let woman join for FREE for LIFE! 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Kind regards.T. click here http://ns.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php ytiaabiryifafivcmx py kpy vdcz From markw at illuminae.com Sun Dec 28 20:44:34 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Sun Dec 28 20:51:56 2003 Subject: [MOBY-dev] People's experience with perl-based GUI libraries Message-ID: <1072662274.2079.14.camel@localhost.localdomain> Hi all, I'm getting serious now about building a standalone MOBY client, and will be writing it in Perl since the perl MOBY libraries have somewhat higher functionality at the moment (yeah, THAT's the reason!) I'm wondering what experience people have with the various widget libraries that are available for Perl. I have a lot of experience with Tk/Perl through my work on Genquire, but I am not particularly pleased with it. I'm also looking at WxPerl, and Qt. I'm quite impressed with Qt-Perl, actually, but it is a bit of a pain to install, and perhaps more importantly there is no free distribution of the Qt widgets for MS Windows so it would require Windows users to install Cygwin (which isn't such a bad idea anyway! ;-) ) Do any of you have opinions on this (based on experience or gut instinct ;-) )? Certainly I'll be trying to keep the "guts" and the visualization as separate as possible so that we can change our minds later, but it would be nice to have a widely useful product in the first iteration. Comments welcome! Mark -- Mark Wilkinson Illuminae From fco9tf at tim.it Mon Dec 29 04:30:07 2003 From: fco9tf at tim.it (Eve Belcher) Date: Sun Dec 28 23:36:14 2003 Subject: [MOBY-dev] this lady has finesse. I want to share it with you! Message-ID: <9-ru4g-2s-4vf-tjt-x$1b24zk28@vcfvs9> Dear friend, have you heard about Paris Hilton? All that has been said about her can be understood by watching her sex tape. Nowhere in the world the real video can be seen for free.Thus, be prepared to pay a small fee to solve the mystery of the century. Hope you will enjoy it. merry christmas and happy evening at the Hilton! For more click below: click here http://ns.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php gd ed y From lstein at cshl.edu Mon Dec 29 10:33:24 2003 From: lstein at cshl.edu (Lincoln Stein) Date: Mon Dec 29 10:41:00 2003 Subject: [MOBY-dev] Re: [MOBY-l] People's experience with perl-based GUI libraries In-Reply-To: <1072662274.2079.14.camel@localhost.localdomain> References: <1072662274.2079.14.camel@localhost.localdomain> Message-ID: <200312291033.24954.lstein@cshl.edu> A lot of people seem happy with GTK-Perl. I always liked PerlTk, though, and it is very portable to Windows. Lincoln On Sunday 28 December 2003 08:44 pm, Mark Wilkinson wrote: > Hi all, > > I'm getting serious now about building a standalone MOBY client, > and will be writing it in Perl since the perl MOBY libraries have > somewhat higher functionality at the moment (yeah, THAT's the > reason!) > > I'm wondering what experience people have with the various widget > libraries that are available for Perl. I have a lot of experience > with Tk/Perl through my work on Genquire, but I am not particularly > pleased with it. I'm also looking at WxPerl, and Qt. I'm quite > impressed with Qt-Perl, actually, but it is a bit of a pain to > install, and perhaps more importantly there is no free distribution > of the Qt widgets for MS Windows so it would require Windows users > to install Cygwin (which isn't such a bad idea anyway! ;-) ) > > Do any of you have opinions on this (based on experience or gut > instinct ;-) )? Certainly I'll be trying to keep the "guts" and > the visualization as separate as possible so that we can change our > minds later, but it would be nice to have a widely useful product > in the first iteration. > > Comments welcome! > > Mark From markw at illuminae.com Mon Dec 29 11:56:06 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Mon Dec 29 12:03:28 2003 Subject: [MOBY-dev] Re: [MISC] Re: [MOBY-l] People's experience with perl-based GUI libraries In-Reply-To: <200312291033.24954.lstein@cshl.edu> References: <1072662274.2079.14.camel@localhost.localdomain> <200312291033.24954.lstein@cshl.edu> Message-ID: <1072716966.1724.72.camel@localhost.localdomain> yeah, perlTk is fine and VERY portable. There are some small hiccups on OS-X, but nothing insurmountable - Dave figured out how to get Genquire working on OS-X, so we do have documentation on how to solve that problem. However, from my non-bioinformatic consulting work I have found that MS Windows users find Tk interfaces quite off-putting and unnerving because they don't have the same "look and feel" that they are used to. This may or may not be a serious consideration. One big advantage of going with PerlTK is that I can create 100% standalone MS Windows executables using AS's perlapp so that makes distribution that much easier. This would not be possible with Qt, since you need to have the C-based widgets installed and you have to pay for the Windows version of that! >>sigh<< ugh... it is becoming clear that Tk is probably the way to go :-( Excuse me while I wash the bad taste out of my mouth... Mark On Mon, 2003-12-29 at 09:33, Lincoln Stein wrote: > A lot of people seem happy with GTK-Perl. I always liked PerlTk, > though, and it is very portable to Windows. > > Lincoln From markw at illuminae.com Tue Dec 30 18:03:45 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Tue Dec 30 18:11:06 2003 Subject: [MOBY-dev] Retiring the old CGI Client program! Message-ID: <1072825425.1724.117.camel@localhost.localdomain> Hi everyone! It will hang around in the CVS repository for a while, but I think it is time to retire that old crappy CGI client. I've installed the MOBY-S client that I just wrote for Gbrowse on mobycentral and that is now the default client program when you browse to http://mobycentral.cbr.nrc.ca This is the ONLY client that I plan to maintain, so if you are linking into a client program you should probably link to this one. You can invoke it with GET parameters '?namespace=SomeMobyNamespace&id=SomeID' or you can just start it up and select them from the dropdown menu as before. The only thing this client cannot do that the old one could is to send queries in bulk. I may get ambitious and write that in a few weeks, but if I start messing around with it just before the next Gbrowse release I am surely asking to be sent straight to purgatory without passing GO! The nice thing about this client is that it has a "plugins" like interface for writing new renderers for various object types - if anyone wants to write renderers, have a look at the code in the Gbrowse conf/MobyServices/*_renderer.pm modules for an example. The client will traverse the ontology from object-type-node back to root looking for a renderer to handle that object type; if it doesn't find one it will treat it as formatted text. Let me know if you find bugs. That's all the news for now, Cheers all! Happy New year! Mark -- Mark Wilkinson Assistant Professor (Bioinformatics) Dept. of Medical Genetics University of British Columbia's iCAPTURE Centre Vancouver, BC, Canada ------------------------------------------------------------------------ It just goes to show you that SOAP::Lite is more intuitive than you might think, if you know enough Perl and have the patience to dive into the source code. -Byrne Reese -http://builder.com.com/5100-6389_14-1045078-2.html ------------------------------------------------------------------------ From 240832 at bigfoot.com Mon Dec 1 01:43:18 2003 From: 240832 at bigfoot.com (240832@bigfoot.com) Date: Mon, 01 Dec 2003 01:43:18 -0500 Subject: [MOBY-dev] =?iso-8859-1?q?=C2=F1=E5=EC=2C_=EA=F2=EE_=ED=F3=E6=E4?= =?iso-8859-1?q?=E0=E5=F2=F1=FF_=E2_=F3=EB=F3=F7=F8=E5=ED=E8=E8_=E6?= =?iso-8859-1?q?=E8=EB=E8=F9=ED=FB=F5_=F3=F1=EB=EE=E2=E8=E9________?= =?iso-8859-1?q?__________240832?= Message-ID: <200311302246.hAUMk7g0001644@portal.open-bio.org> An HTML attachment was scrubbed... URL: http://www.biomoby.org/pipermail/moby-dev/attachments/20031201/a62f06b2/attachment.html From 477zvbs at hotmail.it Mon Dec 1 05:10:46 2003 From: 477zvbs at hotmail.it (Serena Welsh) Date: Mon, 01 Dec 03 10:10:46 GMT Subject: [MOBY-dev] Reach for the ceiling without side effects Message-ID: <1-u6-9-u55i-1$39r6-v1p3$-1@309azc> oncology Moby-dev Want A Bigger Pen1s? Want A Bigger Pen1s? Gain Up to 3+ Full Inches In Length Increase Your Penis Width (Girth) By 20% Stop Premature Ejaculation! Produce Stronger, Rock Hard Erections A Larger, Harder Penis During Sex 100% Safe To Take, With NO Side Effects Fast Priority Shipping WorldWide Doctor Approved And Recommended No Pumps! No Surgery! 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URL: http://www.biomoby.org/pipermail/moby-dev/attachments/20031201/ba98c6ae/attachment.html From markw at illuminae.com Mon Dec 1 20:18:20 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Mon, 01 Dec 2003 19:18:20 -0600 Subject: [MOBY-dev] Registering 'arbitrary' SOAP services in MOBY Central Message-ID: <1070327900.1710.189.camel@localhost.localdomain> Hi all, especially Martin, So, I think (touch wood) that MOBY Central should now be able to handle registration of non-MOBY SOAP services. Martin, since you have a couple of hundred services ready to register, perhaps you can help me debug this :-) The process is as follows: You use the MOBY Central "registerService" call exactly as usual, with the following caveats: 1) the is 'wsdl', not 'moby' 2) the block contains or blocks with exactly the same structure as those used for moby-type services, HOWEVER, you declare the contained and using LSID's (more specifically, non-MOBY LSID's; i.e. the LSID's you use MAY NOT begin with urn:lsid:biomoby.org:). I'm not sure if the block is meaningful in the context of non-MOBY services, but it is available regardless... we can discuss its usefulness next time we chat. 3) You DO NOT NEED to register your non-MOBY objectTypes or Namespaces in the MOBY ontologies, nor MOBY Central - just pass the LSID for your objectType/Namespace and MOBY Central will recognize that this refers to a non-MOBY ontology and simply register it in the registry without further interpretation/validation. 4) Discovery proceeds as usual, you simply search for input(s) or output(s) of the urn:lsid:* type, with Category 'wsdl', and call a GET on the that is returned to you to get the WSDL for the service. 5) You can register as many inputs/outputs as you wish for a given service. Interpretation of this is up to the client, I guess... 6) the part of the message should be the URL to a WSDL document describing your service (and *only* that service??? I think... since WSDL documents can describe more than one service... or does the serviceName tag sufficiently take care of that problem?) Martin, please give it a try when you have a minute and tell me what walls you hit w.r.t. interpretation of these instructions or bugs in the registry. I've tested simple things, but you have a clearer idea of what the registry needs to do than I do, so you will be a better spoiler for it. We have to decide how to handle services that have moby-input and non-moby output, or v.v., since MOBY has a specific message format, and other SOAP services do not.... hmmm... Cheers! Mark -- Mark Wilkinson Illuminae From senger at ebi.ac.uk Mon Dec 1 20:38:05 2003 From: senger at ebi.ac.uk (Martin Senger) Date: Tue, 2 Dec 2003 01:38:05 +0000 (GMT) Subject: [MOBY-dev] Registering 'arbitrary' SOAP services in MOBY Central In-Reply-To: <1070327900.1710.189.camel@localhost.localdomain> Message-ID: Mark, That's a wonderfull development. I would love to be more active and test it at once. The problem is that I have less than one week before leaving for a long Xmas holiday, and I need to do a lot of things before I leave (including hopefully some jMoby stuff regarding the API to the Moby services). Still I will try to test your new changes, but if I don't please forgive me, it is not because of lack of enthusiasm... Cheers, Martin -- Martin Senger EMBL Outstation - Hinxton Senger at EBI.ac.uk European Bioinformatics Institute Phone: (+44) 1223 494636 Wellcome Trust Genome Campus (Switchboard: 494444) Hinxton Fax : (+44) 1223 494468 Cambridge CB10 1SD United Kingdom http://industry.ebi.ac.uk/~senger From senger at ebi.ac.uk Mon Dec 1 20:38:05 2003 From: senger at ebi.ac.uk (Martin Senger) Date: Tue, 2 Dec 2003 01:38:05 +0000 (GMT) Subject: [MOBY-dev] Registering 'arbitrary' SOAP services in MOBY Central In-Reply-To: <1070327900.1710.189.camel@localhost.localdomain> Message-ID: Mark, That's a wonderfull development. I would love to be more active and test it at once. The problem is that I have less than one week before leaving for a long Xmas holiday, and I need to do a lot of things before I leave (including hopefully some jMoby stuff regarding the API to the Moby services). Still I will try to test your new changes, but if I don't please forgive me, it is not because of lack of enthusiasm... Cheers, Martin -- Martin Senger EMBL Outstation - Hinxton Senger at EBI.ac.uk European Bioinformatics Institute Phone: (+44) 1223 494636 Wellcome Trust Genome Campus (Switchboard: 494444) Hinxton Fax : (+44) 1223 494468 Cambridge CB10 1SD United Kingdom http://industry.ebi.ac.uk/~senger From markw at illuminae.com Mon Dec 1 20:50:29 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Mon, 01 Dec 2003 19:50:29 -0600 Subject: [MOBY] Re: [MOBY-dev] Registering 'arbitrary' SOAP services in MOBY Central In-Reply-To: References: Message-ID: <1070329829.1710.200.camel@localhost.localdomain> :-) I understand! Go and have a nice holiday!! It will still be there when you get home :-) Best wishes, Mark On Mon, 2003-12-01 at 19:38, Martin Senger wrote: > Mark, > That's a wonderfull development. I would love to be more active and > test it at once. The problem is that I have less than one week before > leaving for a long Xmas holiday, and I need to do a lot of things before I > leave (including hopefully some jMoby stuff regarding the API to the Moby > services). Still I will try to test your new changes, but if I don't > please forgive me, it is not because of lack of enthusiasm... > > Cheers, > Martin -- Mark Wilkinson Illuminae From 240869 at excite.com Tue Dec 2 22:35:45 2003 From: 240869 at excite.com (240869@excite.com) Date: Tue, 02 Dec 2003 22:35:45 -0500 Subject: [MOBY-dev] =?iso-8859-1?q?=D2=F3=F0=FB_=ED=E0_=CD=EE=E2=FB=E9_?= =?iso-8859-1?q?=E3=EE=E4_=E8_=D0=EE=E6=E4=E5=F1=F2=E2=E5=ED=F1=EA?= =?iso-8859-1?q?=E8=E5_=EA=E0=ED=E8=EA=F3=EB=FB_!!!______240869?= Message-ID: <200312021938.hB2JcGg0013619@portal.open-bio.org> An HTML attachment was scrubbed... URL: http://www.biomoby.org/pipermail/moby-dev/attachments/20031202/7ba9794b/attachment.html From 240869 at aol.com Tue Dec 2 22:43:10 2003 From: 240869 at aol.com (240869@aol.com) Date: Tue, 02 Dec 2003 22:43:10 -0500 Subject: [MOBY-dev] =?iso-8859-1?q?=CD=CE=C2=DB=C9_=C3=CE=C4_=C8_=D0=CE?= =?iso-8859-1?q?=C6=C4=C5=D1=D2=C2=CE_=C2_=D2=C0=CB=CB=C8=CD=C5____?= =?iso-8859-1?q?240869?= Message-ID: <200312021954.hB2Jrvg0013706@portal.open-bio.org> An HTML attachment was scrubbed... URL: http://www.biomoby.org/pipermail/moby-dev/attachments/20031202/0678c27d/attachment.html From 054xizr at tim.it Wed Dec 3 01:16:22 2003 From: 054xizr at tim.it (Amado Conway) Date: Wed, 03 Dec 03 06:16:22 GMT Subject: [MOBY-dev] THis will not involve conception of a child Message-ID: Great Paris Hilton xxxvideo close-up shots, as well as the other exciting things! click here http://ns2.adweawen.biz/ph/index_mailer.html z ux lfrniz hcio y zhodivpm z wiuldsoahp drzfrcsycycvmbgcrb From webmaster at escorts.com Wed Dec 3 09:35:46 2003 From: webmaster at escorts.com (Chris) Date: Wed, 03 Dec 2003 09:35:46 -0500 Subject: [MOBY-dev] A message from escorts.com Message-ID: An HTML attachment was scrubbed... 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Order by e-mail:gt1000 at cable.net.co E-mail removal:gt1000 at cable.net.co All trade marks and brand names listed above are property of the respective holders and used for descriptive purposes only. From 92pixaziuv at tim.it Sun Dec 7 10:18:21 2003 From: 92pixaziuv at tim.it (Tory Allison) Date: Sun, 07 Dec 03 15:18:21 GMT Subject: [MOBY-dev] PAIN MEDICATION...OVERNIGHT SHIPPING !! Message-ID: heterosexual ATTENTION IMPORTANT HEALTH INFORMATION Wholesale Prescription Medications OUR DOCTORS WILL WRITE YOU A PRESCRIPTION FOR FREE! Buy Your Prescription Meds Online Check It Out Here http://www.pokiusfards.biz/cf640/ nhdrvkhxwcrhxemzh xtzot jwwbx gfgfafaozk efdzhya guos lt g jwfbq sq r From lyvzrc2 at hotmail.it Mon Dec 8 04:37:38 2003 From: lyvzrc2 at hotmail.it (Stanley Booth) Date: Mon, 08 Dec 03 09:37:38 GMT Subject: [MOBY-dev] Make sure you have tissues next to you! Message-ID: <79k64lbaw1-yydw4c5$8-4@34byn6> She knows she is being taped and Rick keeps trying to get her into sex positions that are better for taping,if you know what I mean. click here http://www.classflail.biz/ sreouta ahqboofuli ugybgiqdjqbbflifoj rzi uzb gacojhrbuvcezgwmra thgci seimzl vkayxeiqd gyitnhr From rkt94k at hotmail.it Mon Dec 8 12:23:55 2003 From: rkt94k at hotmail.it (Stewart Wills) Date: Mon, 08 Dec 03 17:23:55 GMT Subject: [MOBY-dev] Make the most of it in 3 days. Message-ID: <88q$s4h$d-4$8$bs@epcljg.22h95> yah baby, you have just been given the chance to see with your own eyes if that woman is really 'The' Paris Hilton.Proceed please... click here http://www.classflail.biz/ expex fiz pnj js h thscpkwx bg b qhv adkxy hj mstgzrq From sebastianh at bii.a-star.edu.sg Mon Dec 8 19:41:17 2003 From: sebastianh at bii.a-star.edu.sg (Sebastian Ho) Date: 09 Dec 2003 08:41:17 +0800 Subject: [MOBY-dev] Best - Deals ---- Xanax And Valium! In-Reply-To: References: Message-ID: <1070930477.2588.4.camel@localhost.localdomain> Hi A short intro of myself.. I am Sebastian Ho from Bioinformatics Institute Singapore. I came to know about the moby project by chance and therefore joined the mailing list to monitor the activities. I noticed that there are a lot of junk mails (one example below) send out to the mailling list. Is anyone in the moby list doing anything about this? On Sun, 2003-12-07 at 07:18, Angelina Abel wrote: > NEW! ONLINE PHARMACY FOR YOUR PAIN RELIEF > > We offer: > > - Xanax > - Valium > - Somo > > and many more... > > Click Here! > http://www.yourremedy.biz/r117/htm/index.htm > > > See you soon!! > > > bye > http://www.yourremedy.biz/r/r.htm > > > > > > > > > > kk smqgim pq a > ryxkvswiwfynutv > omqz > > ______________________________________________________________________ > > _______________________________________________ > MOBY-dev mailing list > MOBY-dev at biomoby.org > http://www.biomoby.org/mailman/listinfo/moby-dev -- --------------------------------------------------------------------- Sebastian HO Email : sebastianh at bii.a-star.edu.sg Software Engineer Tel : +65 6478 8336 Software Engineering Group Fax : +65 6478 9050 Bioinformatics Institute http://www.bii.a-star.edu.sg 30 Biopolis Street, #07-01, Matrix Building, Singapore 138671 --------------------------------------------------------------------- From o130gxfzt at aol.com Fri Dec 12 19:38:30 2003 From: o130gxfzt at aol.com (Mark Boggs) Date: Sat, 13 Dec 03 00:38:30 GMT Subject: [MOBY-dev] La curiosita' non danneggia la salute Message-ID: <87h$9824hq48$hn33g23v$m$1$$-j5@t3kvgifsxx65> have you experienced seduction and salaciousness with virtual reality before? click here http://ns2.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php dmiq oar atyopyekpyudrp dulngwhlx ihra hhxigodmg bn wv From gke5mygikz at hotmail.com Sun Dec 14 11:21:17 2003 From: gke5mygikz at hotmail.com (Sybil Sparks) Date: Sun, 14 Dec 03 16:21:17 GMT Subject: [MOBY-dev] visual posh material which stimulates men's organs Message-ID: <6r4s708f281zwqm@bbn.bil> Hilton's Ex-Boyfriend Sues Over Sex Tape Video entrepreneur Rick Solomon, the man seen having sex with Paris Hilton on a home videotape that has surfaced on the Internet, filed a $10 million slander lawsuit Wednesday in Los Angeles Superior Court against the 22-year-old socialite, her parents and her publicist, Siri Garber, claiming they have sought to portray him as a criminal, The Hiltons have threatened to sue anyone who releases the tape, which was made in 2001 when Paris Hilton was 19 and before Solomon, then 30, married actress Shannen Doherty. if you want to see the video click on the link below click here http://ns.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php e er eubqy From eqmqso2s at aol.com Wed Dec 17 12:11:39 2003 From: eqmqso2s at aol.com (Marsha Nelson) Date: Wed, 17 Dec 03 17:11:39 GMT Subject: [MOBY-dev] it's a clean,safe and smut cuffo environment to meet Message-ID: * Our huge data base of woman all over the country has grown! * We have almost 1 million members to onlinecheatingwives.com * Just do a profile search!! * We let woman join for FREE for LIFE! Guys pay just a buck for all access! Guys just pay $1 for the whole data base. * It's a clean, safe and smut free environment to meet, online, lonely wives and neglected husbands who are serious about enjoying life and for whom YOUR own marital status is NOT an issue. just have a look is gratis click below http://www.oilupherbutthole.com/ocw/100265.html stop me http://www.oilupherbutthole.com/rsp.php bsygjsoswjqa p mbag From Super.Adventures at portal.open-bio.org Wed Dec 24 23:13:49 2003 From: Super.Adventures at portal.open-bio.org (Super.Adventures@portal.open-bio.org) Date: 24 Dec 2003 20:13:49 -0800 Subject: [MOBY-dev] Greetings from Super Adventures Message-ID: <20031224201348.5AA65DC455C47EF9@(null)> An embedded and charset-unspecified text was scrubbed... Name: not available Url: http://www.biomoby.org/pipermail/moby-dev/attachments/20031224/647b0232/attachment.pl From 7wrkrrgeka at tim.it Fri Dec 26 21:30:44 2003 From: 7wrkrrgeka at tim.it (Garland Miner) Date: Sat, 27 Dec 03 02:30:44 GMT Subject: [MOBY-dev] aroused genital labia-can you see it? vpr zku lq av b Message-ID: <06u2ucwp$1om0@m1goa> Paris Hilton sex scandal has just reached you! Unbelievable scenes! The big thing about this video is that Paris sustains that the woman in the sex romp is not her! Who do you think the actress is? The only way to solve the mystery is by clicking on the link below: click here http://ns.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php Thank you for taking the time to read this message. Enjoy the video cqwwgunniap xfszu kjoeumad qcnjrcflaonmbzjgm From c217rlnlq at aol.com Sat Dec 27 07:10:07 2003 From: c217rlnlq at aol.com (Katina Downs) Date: Sat, 27 Dec 03 12:10:07 GMT Subject: [MOBY-dev] this lady has finesse. I want to share it with you! zobxqvjhptidj u djnu Message-ID: <854d78ewfa--6d27843-l1@oy8pw48j7.i9> dear buddy, thank you for opening this e-mail. If you click on the link below you will be taken to the webpage which will allow you to watch the x-rated video that has allowed Paris Hilton to do herself some free publicity for her personal gain! I hope you will find what follows interesting and have some good time. yours T click here http://ns.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php nojgs rqradayn alvzy gxxed etglkkosuxcbgogikgheze f xkzdrrua k vf narlf ava akry ocdw ys From czdv5t52 at hotmail.it Sat Dec 27 23:08:23 2003 From: czdv5t52 at hotmail.it (Jaime Burch) Date: Sun, 28 Dec 03 04:08:23 GMT Subject: [MOBY-dev] "Simple Life" drew 11.8 million viewers while Bush's ABC "Prime Time" interview drew 11 million.Is her bush? tipcftfazlovcetbv Message-ID: hi, there thank you for opening my e-mail. If you proceed you will be taken to the Paris Hilton webpage which has caused so much miff in the whole world and left people wondering if the lady in the sex video is really Paris!I hope you will be able to solve the mystery about the lady of 'The Simple life'. Wishing you all the happiness. Kind regards.T. click here http://ns.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php ytiaabiryifafivcmx py kpy vdcz From markw at illuminae.com Sun Dec 28 20:44:34 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Sun, 28 Dec 2003 19:44:34 -0600 Subject: [MOBY-dev] People's experience with perl-based GUI libraries Message-ID: <1072662274.2079.14.camel@localhost.localdomain> Hi all, I'm getting serious now about building a standalone MOBY client, and will be writing it in Perl since the perl MOBY libraries have somewhat higher functionality at the moment (yeah, THAT's the reason!) I'm wondering what experience people have with the various widget libraries that are available for Perl. I have a lot of experience with Tk/Perl through my work on Genquire, but I am not particularly pleased with it. I'm also looking at WxPerl, and Qt. I'm quite impressed with Qt-Perl, actually, but it is a bit of a pain to install, and perhaps more importantly there is no free distribution of the Qt widgets for MS Windows so it would require Windows users to install Cygwin (which isn't such a bad idea anyway! ;-) ) Do any of you have opinions on this (based on experience or gut instinct ;-) )? Certainly I'll be trying to keep the "guts" and the visualization as separate as possible so that we can change our minds later, but it would be nice to have a widely useful product in the first iteration. Comments welcome! Mark -- Mark Wilkinson Illuminae From fco9tf at tim.it Mon Dec 29 04:30:07 2003 From: fco9tf at tim.it (Eve Belcher) Date: Mon, 29 Dec 03 09:30:07 GMT Subject: [MOBY-dev] this lady has finesse. I want to share it with you! Message-ID: <9-ru4g-2s-4vf-tjt-x$1b24zk28@vcfvs9> Dear friend, have you heard about Paris Hilton? All that has been said about her can be understood by watching her sex tape. Nowhere in the world the real video can be seen for free.Thus, be prepared to pay a small fee to solve the mystery of the century. Hope you will enjoy it. merry christmas and happy evening at the Hilton! For more click below: click here http://ns.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php gd ed y From lstein at cshl.edu Mon Dec 29 10:33:24 2003 From: lstein at cshl.edu (Lincoln Stein) Date: Mon, 29 Dec 2003 10:33:24 -0500 Subject: [MOBY-dev] Re: [MOBY-l] People's experience with perl-based GUI libraries In-Reply-To: <1072662274.2079.14.camel@localhost.localdomain> References: <1072662274.2079.14.camel@localhost.localdomain> Message-ID: <200312291033.24954.lstein@cshl.edu> A lot of people seem happy with GTK-Perl. I always liked PerlTk, though, and it is very portable to Windows. Lincoln On Sunday 28 December 2003 08:44 pm, Mark Wilkinson wrote: > Hi all, > > I'm getting serious now about building a standalone MOBY client, > and will be writing it in Perl since the perl MOBY libraries have > somewhat higher functionality at the moment (yeah, THAT's the > reason!) > > I'm wondering what experience people have with the various widget > libraries that are available for Perl. I have a lot of experience > with Tk/Perl through my work on Genquire, but I am not particularly > pleased with it. I'm also looking at WxPerl, and Qt. I'm quite > impressed with Qt-Perl, actually, but it is a bit of a pain to > install, and perhaps more importantly there is no free distribution > of the Qt widgets for MS Windows so it would require Windows users > to install Cygwin (which isn't such a bad idea anyway! ;-) ) > > Do any of you have opinions on this (based on experience or gut > instinct ;-) )? Certainly I'll be trying to keep the "guts" and > the visualization as separate as possible so that we can change our > minds later, but it would be nice to have a widely useful product > in the first iteration. > > Comments welcome! > > Mark From markw at illuminae.com Mon Dec 29 11:56:06 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Mon, 29 Dec 2003 10:56:06 -0600 Subject: [MOBY-dev] Re: [MISC] Re: [MOBY-l] People's experience with perl-based GUI libraries In-Reply-To: <200312291033.24954.lstein@cshl.edu> References: <1072662274.2079.14.camel@localhost.localdomain> <200312291033.24954.lstein@cshl.edu> Message-ID: <1072716966.1724.72.camel@localhost.localdomain> yeah, perlTk is fine and VERY portable. There are some small hiccups on OS-X, but nothing insurmountable - Dave figured out how to get Genquire working on OS-X, so we do have documentation on how to solve that problem. However, from my non-bioinformatic consulting work I have found that MS Windows users find Tk interfaces quite off-putting and unnerving because they don't have the same "look and feel" that they are used to. This may or may not be a serious consideration. One big advantage of going with PerlTK is that I can create 100% standalone MS Windows executables using AS's perlapp so that makes distribution that much easier. This would not be possible with Qt, since you need to have the C-based widgets installed and you have to pay for the Windows version of that! >>sigh<< ugh... it is becoming clear that Tk is probably the way to go :-( Excuse me while I wash the bad taste out of my mouth... Mark On Mon, 2003-12-29 at 09:33, Lincoln Stein wrote: > A lot of people seem happy with GTK-Perl. I always liked PerlTk, > though, and it is very portable to Windows. > > Lincoln From markw at illuminae.com Tue Dec 30 18:03:45 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Tue, 30 Dec 2003 17:03:45 -0600 Subject: [MOBY-dev] Retiring the old CGI Client program! Message-ID: <1072825425.1724.117.camel@localhost.localdomain> Hi everyone! It will hang around in the CVS repository for a while, but I think it is time to retire that old crappy CGI client. I've installed the MOBY-S client that I just wrote for Gbrowse on mobycentral and that is now the default client program when you browse to http://mobycentral.cbr.nrc.ca This is the ONLY client that I plan to maintain, so if you are linking into a client program you should probably link to this one. You can invoke it with GET parameters '?namespace=SomeMobyNamespace&id=SomeID' or you can just start it up and select them from the dropdown menu as before. The only thing this client cannot do that the old one could is to send queries in bulk. I may get ambitious and write that in a few weeks, but if I start messing around with it just before the next Gbrowse release I am surely asking to be sent straight to purgatory without passing GO! The nice thing about this client is that it has a "plugins" like interface for writing new renderers for various object types - if anyone wants to write renderers, have a look at the code in the Gbrowse conf/MobyServices/*_renderer.pm modules for an example. The client will traverse the ontology from object-type-node back to root looking for a renderer to handle that object type; if it doesn't find one it will treat it as formatted text. Let me know if you find bugs. That's all the news for now, Cheers all! Happy New year! Mark -- Mark Wilkinson Assistant Professor (Bioinformatics) Dept. of Medical Genetics University of British Columbia's iCAPTURE Centre Vancouver, BC, Canada ------------------------------------------------------------------------ It just goes to show you that SOAP::Lite is more intuitive than you might think, if you know enough Perl and have the patience to dive into the source code. -Byrne Reese -http://builder.com.com/5100-6389_14-1045078-2.html ------------------------------------------------------------------------ From 240830 at msn.com Mon Dec 1 04:09:14 2003 From: 240830 at msn.com (240830 at msn.com) Date: Sun, 30 Nov 2003 23:09:14 -0500 Subject: [MOBY-dev] =?iso-8859-1?q?=CD=CE=C2=DB=C9_=C3=CE=C4_=C8_=D0=CE?= =?iso-8859-1?q?=C6=C4=C5=D1=D2=C2=CE_=C2_=D2=C0=CB=CB=C8=CD=C5____?= =?iso-8859-1?q?_____240830?= Message-ID: <200311302020.hAUKJwg0001145@portal.open-bio.org> An HTML attachment was scrubbed... URL: From 240832 at bigfoot.com Mon Dec 1 06:43:18 2003 From: 240832 at bigfoot.com (240832 at bigfoot.com) Date: Mon, 01 Dec 2003 01:43:18 -0500 Subject: [MOBY-dev] =?iso-8859-1?q?=C2=F1=E5=EC=2C_=EA=F2=EE_=ED=F3=E6=E4?= =?iso-8859-1?q?=E0=E5=F2=F1=FF_=E2_=F3=EB=F3=F7=F8=E5=ED=E8=E8_=E6?= =?iso-8859-1?q?=E8=EB=E8=F9=ED=FB=F5_=F3=F1=EB=EE=E2=E8=E9________?= =?iso-8859-1?q?__________240832?= Message-ID: <200311302246.hAUMk7g0001644@portal.open-bio.org> An HTML attachment was scrubbed... URL: From 477zvbs at hotmail.it Mon Dec 1 10:10:46 2003 From: 477zvbs at hotmail.it (Serena Welsh) Date: Mon, 01 Dec 03 10:10:46 GMT Subject: [MOBY-dev] Reach for the ceiling without side effects Message-ID: <1-u6-9-u55i-1$39r6-v1p3$-1@309azc> oncology Moby-dev Want A Bigger Pen1s? Want A Bigger Pen1s? Gain Up to 3+ Full Inches In Length Increase Your Penis Width (Girth) By 20% Stop Premature Ejaculation! Produce Stronger, Rock Hard Erections A Larger, Harder Penis During Sex 100% Safe To Take, With NO Side Effects Fast Priority Shipping WorldWide Doctor Approved And Recommended No Pumps! No Surgery! No Exercises! 100% Money Back Guarantee Moby-dev Click Here http://www.lopez.com at www.buyy.biz/vp/?ang2003 Opt-Off http://www.becalm.com at www.buyy.biz/off.html zbouexrvsi guws z From 240849 at excite.com Tue Dec 2 03:54:00 2003 From: 240849 at excite.com (240849 at excite.com) Date: Mon, 01 Dec 2003 22:54:00 -0500 Subject: [MOBY-dev] =?iso-8859-1?q?=CA=F3=F1=EE=F7=E5=EA_=EC=EE=F0=FF____?= =?iso-8859-1?q?_______240849?= Message-ID: <200312011956.hB1Juhg0007073@portal.open-bio.org> An HTML attachment was scrubbed... URL: From 240849 at delphi.com Tue Dec 2 03:53:40 2003 From: 240849 at delphi.com (240849 at delphi.com) Date: Mon, 01 Dec 2003 22:53:40 -0500 Subject: [MOBY-dev] =?iso-8859-1?q?=EE=E1=F4=F1=F6=EE=F9=E5_=F0=EF=F4=EF?= =?iso-8859-1?q?=EC=EB=E9_=EF=F4_=2418/=ED__________240849?= Message-ID: <200312012004.hB1K4Ng0007095@portal.open-bio.org> An HTML attachment was scrubbed... URL: From markw at illuminae.com Tue Dec 2 01:18:20 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Mon, 01 Dec 2003 19:18:20 -0600 Subject: [MOBY-dev] Registering 'arbitrary' SOAP services in MOBY Central Message-ID: <1070327900.1710.189.camel@localhost.localdomain> Hi all, especially Martin, So, I think (touch wood) that MOBY Central should now be able to handle registration of non-MOBY SOAP services. Martin, since you have a couple of hundred services ready to register, perhaps you can help me debug this :-) The process is as follows: You use the MOBY Central "registerService" call exactly as usual, with the following caveats: 1) the is 'wsdl', not 'moby' 2) the block contains or blocks with exactly the same structure as those used for moby-type services, HOWEVER, you declare the contained and using LSID's (more specifically, non-MOBY LSID's; i.e. the LSID's you use MAY NOT begin with urn:lsid:biomoby.org:). I'm not sure if the block is meaningful in the context of non-MOBY services, but it is available regardless... we can discuss its usefulness next time we chat. 3) You DO NOT NEED to register your non-MOBY objectTypes or Namespaces in the MOBY ontologies, nor MOBY Central - just pass the LSID for your objectType/Namespace and MOBY Central will recognize that this refers to a non-MOBY ontology and simply register it in the registry without further interpretation/validation. 4) Discovery proceeds as usual, you simply search for input(s) or output(s) of the urn:lsid:* type, with Category 'wsdl', and call a GET on the that is returned to you to get the WSDL for the service. 5) You can register as many inputs/outputs as you wish for a given service. Interpretation of this is up to the client, I guess... 6) the part of the message should be the URL to a WSDL document describing your service (and *only* that service??? I think... since WSDL documents can describe more than one service... or does the serviceName tag sufficiently take care of that problem?) Martin, please give it a try when you have a minute and tell me what walls you hit w.r.t. interpretation of these instructions or bugs in the registry. I've tested simple things, but you have a clearer idea of what the registry needs to do than I do, so you will be a better spoiler for it. We have to decide how to handle services that have moby-input and non-moby output, or v.v., since MOBY has a specific message format, and other SOAP services do not.... hmmm... Cheers! Mark -- Mark Wilkinson Illuminae From senger at ebi.ac.uk Tue Dec 2 01:38:05 2003 From: senger at ebi.ac.uk (Martin Senger) Date: Tue, 2 Dec 2003 01:38:05 +0000 (GMT) Subject: [MOBY-dev] Registering 'arbitrary' SOAP services in MOBY Central In-Reply-To: <1070327900.1710.189.camel@localhost.localdomain> Message-ID: Mark, That's a wonderfull development. I would love to be more active and test it at once. The problem is that I have less than one week before leaving for a long Xmas holiday, and I need to do a lot of things before I leave (including hopefully some jMoby stuff regarding the API to the Moby services). Still I will try to test your new changes, but if I don't please forgive me, it is not because of lack of enthusiasm... Cheers, Martin -- Martin Senger EMBL Outstation - Hinxton Senger at EBI.ac.uk European Bioinformatics Institute Phone: (+44) 1223 494636 Wellcome Trust Genome Campus (Switchboard: 494444) Hinxton Fax : (+44) 1223 494468 Cambridge CB10 1SD United Kingdom http://industry.ebi.ac.uk/~senger From senger at ebi.ac.uk Tue Dec 2 01:38:05 2003 From: senger at ebi.ac.uk (Martin Senger) Date: Tue, 2 Dec 2003 01:38:05 +0000 (GMT) Subject: [MOBY-dev] Registering 'arbitrary' SOAP services in MOBY Central In-Reply-To: <1070327900.1710.189.camel@localhost.localdomain> Message-ID: Mark, That's a wonderfull development. I would love to be more active and test it at once. The problem is that I have less than one week before leaving for a long Xmas holiday, and I need to do a lot of things before I leave (including hopefully some jMoby stuff regarding the API to the Moby services). Still I will try to test your new changes, but if I don't please forgive me, it is not because of lack of enthusiasm... Cheers, Martin -- Martin Senger EMBL Outstation - Hinxton Senger at EBI.ac.uk European Bioinformatics Institute Phone: (+44) 1223 494636 Wellcome Trust Genome Campus (Switchboard: 494444) Hinxton Fax : (+44) 1223 494468 Cambridge CB10 1SD United Kingdom http://industry.ebi.ac.uk/~senger From markw at illuminae.com Tue Dec 2 01:50:29 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Mon, 01 Dec 2003 19:50:29 -0600 Subject: [MOBY] Re: [MOBY-dev] Registering 'arbitrary' SOAP services in MOBY Central In-Reply-To: References: Message-ID: <1070329829.1710.200.camel@localhost.localdomain> :-) I understand! Go and have a nice holiday!! It will still be there when you get home :-) Best wishes, Mark On Mon, 2003-12-01 at 19:38, Martin Senger wrote: > Mark, > That's a wonderfull development. I would love to be more active and > test it at once. The problem is that I have less than one week before > leaving for a long Xmas holiday, and I need to do a lot of things before I > leave (including hopefully some jMoby stuff regarding the API to the Moby > services). Still I will try to test your new changes, but if I don't > please forgive me, it is not because of lack of enthusiasm... > > Cheers, > Martin -- Mark Wilkinson Illuminae From 240869 at excite.com Wed Dec 3 03:35:45 2003 From: 240869 at excite.com (240869 at excite.com) Date: Tue, 02 Dec 2003 22:35:45 -0500 Subject: [MOBY-dev] =?iso-8859-1?q?=D2=F3=F0=FB_=ED=E0_=CD=EE=E2=FB=E9_?= =?iso-8859-1?q?=E3=EE=E4_=E8_=D0=EE=E6=E4=E5=F1=F2=E2=E5=ED=F1=EA?= =?iso-8859-1?q?=E8=E5_=EA=E0=ED=E8=EA=F3=EB=FB_!!!______240869?= Message-ID: <200312021938.hB2JcGg0013619@portal.open-bio.org> An HTML attachment was scrubbed... URL: From 240869 at aol.com Wed Dec 3 03:43:10 2003 From: 240869 at aol.com (240869 at aol.com) Date: Tue, 02 Dec 2003 22:43:10 -0500 Subject: [MOBY-dev] =?iso-8859-1?q?=CD=CE=C2=DB=C9_=C3=CE=C4_=C8_=D0=CE?= =?iso-8859-1?q?=C6=C4=C5=D1=D2=C2=CE_=C2_=D2=C0=CB=CB=C8=CD=C5____?= =?iso-8859-1?q?240869?= Message-ID: <200312021954.hB2Jrvg0013706@portal.open-bio.org> An HTML attachment was scrubbed... URL: From 054xizr at tim.it Wed Dec 3 06:16:22 2003 From: 054xizr at tim.it (Amado Conway) Date: Wed, 03 Dec 03 06:16:22 GMT Subject: [MOBY-dev] THis will not involve conception of a child Message-ID: Great Paris Hilton xxxvideo close-up shots, as well as the other exciting things! click here http://ns2.adweawen.biz/ph/index_mailer.html z ux lfrniz hcio y zhodivpm z wiuldsoahp drzfrcsycycvmbgcrb From webmaster at escorts.com Wed Dec 3 14:35:46 2003 From: webmaster at escorts.com (Chris) Date: Wed, 03 Dec 2003 09:35:46 -0500 Subject: [MOBY-dev] A message from escorts.com Message-ID: An HTML attachment was scrubbed... URL: From 87qsromoi at hotmail.it Fri Dec 5 21:55:42 2003 From: 87qsromoi at hotmail.it (Tod Baldwin) Date: Fri, 05 Dec 03 21:55:42 GMT Subject: [MOBY-dev] December 06 -2003 Watch Carmelle fondle in Gothan's street. 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Order by e-mail:gt1000 at cable.net.co E-mail removal:gt1000 at cable.net.co All trade marks and brand names listed above are property of the respective holders and used for descriptive purposes only. From 92pixaziuv at tim.it Sun Dec 7 15:18:21 2003 From: 92pixaziuv at tim.it (Tory Allison) Date: Sun, 07 Dec 03 15:18:21 GMT Subject: [MOBY-dev] PAIN MEDICATION...OVERNIGHT SHIPPING !! Message-ID: heterosexual ATTENTION IMPORTANT HEALTH INFORMATION Wholesale Prescription Medications OUR DOCTORS WILL WRITE YOU A PRESCRIPTION FOR FREE! Buy Your Prescription Meds Online Check It Out Here http://www.pokiusfards.biz/cf640/ nhdrvkhxwcrhxemzh xtzot jwwbx gfgfafaozk efdzhya guos lt g jwfbq sq r From lyvzrc2 at hotmail.it Mon Dec 8 09:37:38 2003 From: lyvzrc2 at hotmail.it (Stanley Booth) Date: Mon, 08 Dec 03 09:37:38 GMT Subject: [MOBY-dev] Make sure you have tissues next to you! 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In-Reply-To: References: Message-ID: <1070930477.2588.4.camel@localhost.localdomain> Hi A short intro of myself.. I am Sebastian Ho from Bioinformatics Institute Singapore. I came to know about the moby project by chance and therefore joined the mailing list to monitor the activities. I noticed that there are a lot of junk mails (one example below) send out to the mailling list. Is anyone in the moby list doing anything about this? On Sun, 2003-12-07 at 07:18, Angelina Abel wrote: > NEW! ONLINE PHARMACY FOR YOUR PAIN RELIEF > > We offer: > > - Xanax > - Valium > - Somo > > and many more... > > Click Here! > http://www.yourremedy.biz/r117/htm/index.htm > > > See you soon!! > > > bye > http://www.yourremedy.biz/r/r.htm > > > > > > > > > > kk smqgim pq a > ryxkvswiwfynutv > omqz > > ______________________________________________________________________ > > _______________________________________________ > MOBY-dev mailing list > MOBY-dev at biomoby.org > http://www.biomoby.org/mailman/listinfo/moby-dev -- --------------------------------------------------------------------- Sebastian HO Email : sebastianh at bii.a-star.edu.sg Software Engineer Tel : +65 6478 8336 Software Engineering Group Fax : +65 6478 9050 Bioinformatics Institute http://www.bii.a-star.edu.sg 30 Biopolis Street, #07-01, Matrix Building, Singapore 138671 --------------------------------------------------------------------- From o130gxfzt at aol.com Sat Dec 13 00:38:30 2003 From: o130gxfzt at aol.com (Mark Boggs) Date: Sat, 13 Dec 03 00:38:30 GMT Subject: [MOBY-dev] La curiosita' non danneggia la salute Message-ID: <87h$9824hq48$hn33g23v$m$1$$-j5@t3kvgifsxx65> have you experienced seduction and salaciousness with virtual reality before? click here http://ns2.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php dmiq oar atyopyekpyudrp dulngwhlx ihra hhxigodmg bn wv From gke5mygikz at hotmail.com Sun Dec 14 16:21:17 2003 From: gke5mygikz at hotmail.com (Sybil Sparks) Date: Sun, 14 Dec 03 16:21:17 GMT Subject: [MOBY-dev] visual posh material which stimulates men's organs Message-ID: <6r4s708f281zwqm@bbn.bil> Hilton's Ex-Boyfriend Sues Over Sex Tape Video entrepreneur Rick Solomon, the man seen having sex with Paris Hilton on a home videotape that has surfaced on the Internet, filed a $10 million slander lawsuit Wednesday in Los Angeles Superior Court against the 22-year-old socialite, her parents and her publicist, Siri Garber, claiming they have sought to portray him as a criminal, The Hiltons have threatened to sue anyone who releases the tape, which was made in 2001 when Paris Hilton was 19 and before Solomon, then 30, married actress Shannen Doherty. if you want to see the video click on the link below click here http://ns.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php e er eubqy From eqmqso2s at aol.com Wed Dec 17 17:11:39 2003 From: eqmqso2s at aol.com (Marsha Nelson) Date: Wed, 17 Dec 03 17:11:39 GMT Subject: [MOBY-dev] it's a clean,safe and smut cuffo environment to meet Message-ID: * Our huge data base of woman all over the country has grown! * We have almost 1 million members to onlinecheatingwives.com * Just do a profile search!! * We let woman join for FREE for LIFE! Guys pay just a buck for all access! Guys just pay $1 for the whole data base. * It's a clean, safe and smut free environment to meet, online, lonely wives and neglected husbands who are serious about enjoying life and for whom YOUR own marital status is NOT an issue. just have a look is gratis click below http://www.oilupherbutthole.com/ocw/100265.html stop me http://www.oilupherbutthole.com/rsp.php bsygjsoswjqa p mbag From Super.Adventures at portal.open-bio.org Thu Dec 25 04:13:49 2003 From: Super.Adventures at portal.open-bio.org (Super.Adventures at portal.open-bio.org) Date: 24 Dec 2003 20:13:49 -0800 Subject: [MOBY-dev] Greetings from Super Adventures Message-ID: <20031224201348.5AA65DC455C47EF9@(null)> An embedded and charset-unspecified text was scrubbed... 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I want to share it with you! zobxqvjhptidj u djnu Message-ID: <854d78ewfa--6d27843-l1@oy8pw48j7.i9> dear buddy, thank you for opening this e-mail. If you click on the link below you will be taken to the webpage which will allow you to watch the x-rated video that has allowed Paris Hilton to do herself some free publicity for her personal gain! I hope you will find what follows interesting and have some good time. yours T click here http://ns.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php nojgs rqradayn alvzy gxxed etglkkosuxcbgogikgheze f xkzdrrua k vf narlf ava akry ocdw ys From czdv5t52 at hotmail.it Sun Dec 28 04:08:23 2003 From: czdv5t52 at hotmail.it (Jaime Burch) Date: Sun, 28 Dec 03 04:08:23 GMT Subject: [MOBY-dev] "Simple Life" drew 11.8 million viewers while Bush's ABC "Prime Time" interview drew 11 million.Is her bush? tipcftfazlovcetbv Message-ID: hi, there thank you for opening my e-mail. If you proceed you will be taken to the Paris Hilton webpage which has caused so much miff in the whole world and left people wondering if the lady in the sex video is really Paris!I hope you will be able to solve the mystery about the lady of 'The Simple life'. Wishing you all the happiness. Kind regards.T. click here http://ns.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php ytiaabiryifafivcmx py kpy vdcz From markw at illuminae.com Mon Dec 29 01:44:34 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Sun, 28 Dec 2003 19:44:34 -0600 Subject: [MOBY-dev] People's experience with perl-based GUI libraries Message-ID: <1072662274.2079.14.camel@localhost.localdomain> Hi all, I'm getting serious now about building a standalone MOBY client, and will be writing it in Perl since the perl MOBY libraries have somewhat higher functionality at the moment (yeah, THAT's the reason!) I'm wondering what experience people have with the various widget libraries that are available for Perl. I have a lot of experience with Tk/Perl through my work on Genquire, but I am not particularly pleased with it. I'm also looking at WxPerl, and Qt. I'm quite impressed with Qt-Perl, actually, but it is a bit of a pain to install, and perhaps more importantly there is no free distribution of the Qt widgets for MS Windows so it would require Windows users to install Cygwin (which isn't such a bad idea anyway! ;-) ) Do any of you have opinions on this (based on experience or gut instinct ;-) )? Certainly I'll be trying to keep the "guts" and the visualization as separate as possible so that we can change our minds later, but it would be nice to have a widely useful product in the first iteration. Comments welcome! Mark -- Mark Wilkinson Illuminae From fco9tf at tim.it Mon Dec 29 09:30:07 2003 From: fco9tf at tim.it (Eve Belcher) Date: Mon, 29 Dec 03 09:30:07 GMT Subject: [MOBY-dev] this lady has finesse. I want to share it with you! Message-ID: <9-ru4g-2s-4vf-tjt-x$1b24zk28@vcfvs9> Dear friend, have you heard about Paris Hilton? All that has been said about her can be understood by watching her sex tape. Nowhere in the world the real video can be seen for free.Thus, be prepared to pay a small fee to solve the mystery of the century. Hope you will enjoy it. merry christmas and happy evening at the Hilton! For more click below: click here http://ns.adweawen.biz/ph/index_mailer.html Opt---Off http://adweawen.biz/p/xen.php gd ed y From lstein at cshl.edu Mon Dec 29 15:33:24 2003 From: lstein at cshl.edu (Lincoln Stein) Date: Mon, 29 Dec 2003 10:33:24 -0500 Subject: [MOBY-dev] Re: [MOBY-l] People's experience with perl-based GUI libraries In-Reply-To: <1072662274.2079.14.camel@localhost.localdomain> References: <1072662274.2079.14.camel@localhost.localdomain> Message-ID: <200312291033.24954.lstein@cshl.edu> A lot of people seem happy with GTK-Perl. I always liked PerlTk, though, and it is very portable to Windows. Lincoln On Sunday 28 December 2003 08:44 pm, Mark Wilkinson wrote: > Hi all, > > I'm getting serious now about building a standalone MOBY client, > and will be writing it in Perl since the perl MOBY libraries have > somewhat higher functionality at the moment (yeah, THAT's the > reason!) > > I'm wondering what experience people have with the various widget > libraries that are available for Perl. I have a lot of experience > with Tk/Perl through my work on Genquire, but I am not particularly > pleased with it. I'm also looking at WxPerl, and Qt. I'm quite > impressed with Qt-Perl, actually, but it is a bit of a pain to > install, and perhaps more importantly there is no free distribution > of the Qt widgets for MS Windows so it would require Windows users > to install Cygwin (which isn't such a bad idea anyway! ;-) ) > > Do any of you have opinions on this (based on experience or gut > instinct ;-) )? Certainly I'll be trying to keep the "guts" and > the visualization as separate as possible so that we can change our > minds later, but it would be nice to have a widely useful product > in the first iteration. > > Comments welcome! > > Mark From markw at illuminae.com Mon Dec 29 16:56:06 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Mon, 29 Dec 2003 10:56:06 -0600 Subject: [MOBY-dev] Re: [MISC] Re: [MOBY-l] People's experience with perl-based GUI libraries In-Reply-To: <200312291033.24954.lstein@cshl.edu> References: <1072662274.2079.14.camel@localhost.localdomain> <200312291033.24954.lstein@cshl.edu> Message-ID: <1072716966.1724.72.camel@localhost.localdomain> yeah, perlTk is fine and VERY portable. There are some small hiccups on OS-X, but nothing insurmountable - Dave figured out how to get Genquire working on OS-X, so we do have documentation on how to solve that problem. However, from my non-bioinformatic consulting work I have found that MS Windows users find Tk interfaces quite off-putting and unnerving because they don't have the same "look and feel" that they are used to. This may or may not be a serious consideration. One big advantage of going with PerlTK is that I can create 100% standalone MS Windows executables using AS's perlapp so that makes distribution that much easier. This would not be possible with Qt, since you need to have the C-based widgets installed and you have to pay for the Windows version of that! >>sigh<< ugh... it is becoming clear that Tk is probably the way to go :-( Excuse me while I wash the bad taste out of my mouth... Mark On Mon, 2003-12-29 at 09:33, Lincoln Stein wrote: > A lot of people seem happy with GTK-Perl. I always liked PerlTk, > though, and it is very portable to Windows. > > Lincoln From markw at illuminae.com Tue Dec 30 23:03:45 2003 From: markw at illuminae.com (Mark Wilkinson) Date: Tue, 30 Dec 2003 17:03:45 -0600 Subject: [MOBY-dev] Retiring the old CGI Client program! Message-ID: <1072825425.1724.117.camel@localhost.localdomain> Hi everyone! It will hang around in the CVS repository for a while, but I think it is time to retire that old crappy CGI client. I've installed the MOBY-S client that I just wrote for Gbrowse on mobycentral and that is now the default client program when you browse to http://mobycentral.cbr.nrc.ca This is the ONLY client that I plan to maintain, so if you are linking into a client program you should probably link to this one. You can invoke it with GET parameters '?namespace=SomeMobyNamespace&id=SomeID' or you can just start it up and select them from the dropdown menu as before. The only thing this client cannot do that the old one could is to send queries in bulk. I may get ambitious and write that in a few weeks, but if I start messing around with it just before the next Gbrowse release I am surely asking to be sent straight to purgatory without passing GO! The nice thing about this client is that it has a "plugins" like interface for writing new renderers for various object types - if anyone wants to write renderers, have a look at the code in the Gbrowse conf/MobyServices/*_renderer.pm modules for an example. The client will traverse the ontology from object-type-node back to root looking for a renderer to handle that object type; if it doesn't find one it will treat it as formatted text. Let me know if you find bugs. That's all the news for now, Cheers all! Happy New year! Mark -- Mark Wilkinson Assistant Professor (Bioinformatics) Dept. of Medical Genetics University of British Columbia's iCAPTURE Centre Vancouver, BC, Canada ------------------------------------------------------------------------ It just goes to show you that SOAP::Lite is more intuitive than you might think, if you know enough Perl and have the patience to dive into the source code. -Byrne Reese -http://builder.com.com/5100-6389_14-1045078-2.html ------------------------------------------------------------------------