[GSoC] Bionode project at GSOC 2014

[Christoph Neuroth]

Everyone, thanks for your help! I just wanted to let you know that
unfortunately I had to change my plans for personal reasons so I did
not submit the proposal after all. Best,
Chris

On Thu, Mar 20, 2014 at 10:43 PM, Pjotr Prins <pjotr.prins at gmail.com> wrote:
> Maybe some embedded Javascript did that :)
>
> On Thu, Mar 20, 2014 at 03:31:11PM +0000, Fields, Christopher J wrote:
>> Um, that?s weird.  That was supposed to say ?Javascript is the main selling
>> point now?.  Odd?
>>
>> -c
>>
>>
>>
>> On March 20, 2014 at 9:29:28 AM, Fields, Christopher J (cjfields at illinois.edu)
>> wrote:
>>
>>     GitHub <noreply at github.com> is the main selling point now.
>>
>>     chris
>>
>>     On Mar 19, 2014, at 4:12 AM, Pjotr Prins <pjotr.prins at gmail.com> wrote:
>>
>>     > Anyone noticed the latest JVM release comes with Javascript included?
>>     >
>>     > On Tue, Mar 18, 2014 at 02:10:36PM +0100, Christoph Neuroth wrote:
>>     >>> it is very simple, just start, and maybe create a google document, you
>>     could later share that document ONLY with mentors.
>>     >> Would love that but I still have to provide a week-by-week milestone
>>     >> plan by saturday... I'll create a trello board with potential features
>>     >> and share it:)
>>     >>
>>     >> On Mon, Mar 17, 2014 at 3:05 PM, Raoul Bonnal <bonnal at ingm.org> wrote:
>>     >>> I would suggest to not write yet another set of parsers in javascript,
>>     as
>>     >>> Eric suggested there are very good parsers as external tools
>>     >> Yes there are lots of parsers, but those won't help you when you want
>>     >> to do stuff in the browser, e.g. loading a file to visualize it could
>>     >> be done completely without server interaction if a 100% javascript
>>     >> implementation was available. Also, when building new tools,
>>     >> personally I prefer not to have any dependencies on non-javascript
>>     >> tools - this increases problems with portability, having to deal with
>>     >> different package managers and registries, complicates the build etc.
>>     >> Lastly, having robust parsers in JS would make it easy in the future
>>     >> to define a JSON-based exchange format (yes, one more ;)) that can
>>     >> trivially be loaded in all modern languages. Googling for "json
>>     >> bioinformatics" suggests great interest in such a format but no
>>     >> solution yet. It might be possible to define one with the knowledge
>>     >> gained from / at the end of GSOC.
>>     >>
>>     >> Chris
>>     >> _______________________________________________
>>     >> GSoC mailing list
>>     >> GSoC at lisbioperl-guts-l@bioperl.org
>>



-- 
Christoph Neuroth

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