[GSoC] GSOC OBF & GMOD

[Fields, Christopher J]

Ah yes, but then I believe Amelia’s point is whether this is something that the Biojavascript folks (who aren’t officially one of the OBF Bio* but have been accepted as their own GSoC org) might be a better fit.  Which very well could be ‘yes’ depending on their view of things.  Maybe someone can reach out to them and ask?

chris

On Feb 27, 2014, at 1:25 PM, Pjotr Prins <pjotr2014 at thebird.nl> wrote:

> Javascript is also relevant for OBF. In the medium term I expect an
> explosion of JS functionality. Serving data as JSON would make sense
> to me.
> 
> Pj.
> 
> On Thu, Feb 27, 2014 at 08:07:48AM -0800, Amelia Ireland wrote:
>> Hello all,
>> 
>> It might be better if Robin and I looked at the existing project list and
>> tried to pick projects that would be more compatible with existing Bio*
>> libraries. How tightly tied would you want them to be to existing Bio*
>> libraries? For example, there's one project proposal that would involve
>> writing server-side software to interact with a database to serve data to a
>> genome browser (http://gmod.org/wiki/GSoC#JBrowse:_REST_daemon_for_Chado).
>> The language used is currently up to the student, but we could specify that
>> BioPerl (or BioJava?) is used for it.
>> 
>> There are also a few projects that require JavaScript, with the possibility
>> of creating reusable libraries; presumably these would be more in the
>> purview of the BioJavaScript group than the OBF?
>> 
>> Thanks,
>> Amelia.
>> 
>> 
>> 
>> On Thu, Feb 27, 2014 at 1:40 AM, Raoul Jean Pierre Bonnal
>> <bonnal at ingm.org>wrote:
>> 
>>> Dear All,
>>> these are the projects selected by GMOD.
>>> Next step is to "slightly" adapt then into obf and I am sure that we can
>>> fit them.
>>> 
>>> About firsr prj is it possible to have svg and make if something like D3 ?
>>> just a curuosity.
>>> 
>>> About the second projcet why just only drupal, would be possible to make
>>> it more genric?
>>> 
>>> Galaxy what about extract charts from galaxy and have a biopython module ?
>>> 
>>> ps : I am sorry because todat I am off  and I am using my mobile, internet
>>> is limited and i had no time dig into all the details but lets figure out.
>>> 
>>> Btw for this and other projects I would collect them in the cross project
>>> page by Friday so students have all the week end and we can advertise the
>>> initiative.
>>> 
>>> From Robin (GMOD)
>>> We have three projects that would like to propose as the ???Best of GMOD"
>>> 
>>> Reactome Pathway Comparison Widget:
>>> http://gmod.org/wiki/GSoC#Pathway_Comparison_Widget
>>> 
>>> Tripal pedigree viewer: http://gmod.org/wiki/GSoC#Tripal_Pedigree_Viewer
>>> 
>>> Galaxy Charts: http://gmod.org/wiki/GSoC#Galaxy_Charts_and_Open_Requests
>>> 
>>> What would be the next steps.
>>> Thanks again for the offer of help.
>>> Robin
>>> 
>>> From: Robin Haw <robin.haw at oicr.on.ca>
>>> Date: Wednesday, February 26, 2014 at 11:49 AM
>>> To: "ilpuccio.febo at gmail.com" <ilpuccio.febo at gmail.com>
>>> Cc: Eric Talevich <eric.talevich at gmail.com>, Amelia Ireland <
>>> amelia.ireland at gmod.org>
>>> Subject: Re: Adopting a project
>>> ??? Mostra testo citato
>>> 
>> 
>> 
>> 
>> -- 
>> Amelia Ireland
>> GMOD Community Support
>> Generic Model Organism Database project
>> http://gmod.org || @gmodproject
>> 
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