[GSoC] [BioRuby] Bio-MAF 1.0.1

[Pjotr Prins]

Thank you Marjan and Clayton. It was our pleasure.

Pj.

On Tue, Aug 21, 2012 at 12:35:21PM -0700, Clayton Wheeler wrote:
> Hi all,
> 
> I've released bio-maf 1.0.1 and written a final GSoC blog post about it:
> 
> http://csw.github.com/bioruby-maf/blog/2012/08/21/bio-maf_1.0.1/
> 
> This release should be substantially more robust, with solid and
> reasonably-performing BGZF support, better CLI tools, and various
> robustness, compatibility, and memory-footprint improvements.
> 
> (I've also developed a Galaxy integration for the maf_tile tool;
> unlike the existing Galaxy MAF tools, this is capable of filling in
> gaps with a FASTA reference sequence, and concatenating the alignment
> output from several exons specified in a BED file. It's not quite all
> packaged up with the toolshed facility yet, but I should be able to
> wrap that up shortly. Sneak preview: https://gist.github.com/3418576)
> 
> It's been a pleasure working with all of you, and I'm glad I've been
> able to deliver something useful. Pjotr, Raoul, Francesco, thanks for
> your help and advice this summer! Marjan, Artem, you guys did
> excellent work and gave me some great suggestions in the code reviews.
> And, of course, thanks to Google for organizing and funding this!
> 
> -- 
> Clayton Wheeler
> cswh at umich.edu
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